Experiment set29S485 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -5.5 -9.8 imidazole glycerol phosphate synthase compare
BPHYT_RS14915 -5.4 -7.4 phosphoserine aminotransferase compare
BPHYT_RS17685 -5.4 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS15920 -5.3 -6.3 argininosuccinate synthase compare
BPHYT_RS16835 -5.1 -6.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS03150 -5.0 -11.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS06555 -4.9 -7.4 ketol-acid reductoisomerase compare
BPHYT_RS18320 -4.9 -4.7 orotate phosphoribosyltransferase compare
BPHYT_RS33875 -4.8 -7.3 tryptophan synthase subunit alpha compare
BPHYT_RS33880 -4.8 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS02590 -4.7 -8.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33835 -4.7 -6.6 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS16270 -4.7 -3.8 phosphoglycerate kinase compare
BPHYT_RS33865 -4.7 -6.4 tryptophan synthase alpha chain compare
BPHYT_RS06545 -4.6 -6.3 acetolactate synthase compare
BPHYT_RS15915 -4.5 -8.1 ornithine carbamoyltransferase compare
BPHYT_RS17675 -4.4 -2.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17885 -4.4 -3.0 3-dehydroquinate synthase compare
BPHYT_RS01595 -4.3 -10.6 homoserine O-acetyltransferase compare
BPHYT_RS16735 -4.3 -6.5 phosphogluconate dehydratase compare
BPHYT_RS35885 -4.2 -4.0 hypothetical protein compare
BPHYT_RS17265 -4.2 -1.4 cell division protein compare
BPHYT_RS08955 -4.1 -2.9 homoserine dehydrogenase compare
BPHYT_RS17670 -4.1 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS14050 -4.0 -7.1 UDP pyrophosphate phosphatase compare
BPHYT_RS12530 -4.0 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16905 -4.0 -3.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12845 -3.9 -13.7 ATPase compare
BPHYT_RS06900 -3.8 -5.2 aspartate aminotransferase compare
BPHYT_RS17405 -3.8 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS17680 -3.6 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS02610 -3.5 -5.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS03410 -3.5 -2.5 queuine tRNA-ribosyltransferase compare
BPHYT_RS17855 -3.4 -16.1 glutamate synthase compare
BPHYT_RS33645 -3.4 -3.3 homoserine kinase compare
BPHYT_RS14895 -3.4 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS02690 -3.4 -13.9 protoheme IX farnesyltransferase compare
BPHYT_RS20880 -3.2 -1.1 polyketide cyclase compare
BPHYT_RS14275 -3.2 -2.4 hypothetical protein compare
BPHYT_RS04955 -3.1 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS25870 -3.1 -1.0 type III secretion system ATPase compare
BPHYT_RS17395 -2.9 -2.4 anthranilate synthase subunit II compare
BPHYT_RS06550 -2.9 -2.7 acetolactate synthase compare
BPHYT_RS02955 -2.9 -9.7 formyltetrahydrofolate deformylase compare
BPHYT_RS22190 -2.9 -1.5 nucleoid-structuring protein H-NS compare
BPHYT_RS33900 -2.9 -10.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS17400 -2.9 -9.7 anthranilate phosphoribosyltransferase compare
BPHYT_RS04720 -2.9 -5.8 transcriptional regulator compare
BPHYT_RS33840 -2.8 -3.9 amidophosphoribosyltransferase compare
BPHYT_RS05010 -2.8 -4.0 RpiR family transcriptional regulator compare
BPHYT_RS14865 -2.8 -1.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02525 -2.8 -7.7 membrane protein compare
BPHYT_RS02860 -2.7 -0.9 membrane protein compare
BPHYT_RS17945 -2.7 -2.2 cytochrome C biogenesis protein compare
BPHYT_RS23030 -2.7 -1.2 gluconate 2-dehydrogenase compare
BPHYT_RS11390 -2.7 -11.5 penicillin-binding protein 1A compare
BPHYT_RS13705 -2.7 -4.3 chorismate synthase compare
BPHYT_RS07325 -2.7 -0.9 GntR family transcriptional regulator compare
BPHYT_RS05960 -2.6 -6.2 endoribonuclease L-PSP compare
BPHYT_RS03135 -2.6 -10.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS16245 -2.6 -1.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06530 -2.6 -1.6 membrane protein compare
BPHYT_RS17390 -2.6 -13.6 anthranilate synthase subunit I compare
BPHYT_RS25780 -2.5 -0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS06610 -2.5 -1.2 triosephosphate isomerase compare
BPHYT_RS17715 -2.5 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS36275 -2.5 -2.3 hypothetical protein compare
BPHYT_RS32860 -2.5 -1.1 hypothetical protein compare
BPHYT_RS06405 -2.5 -4.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS08960 -2.5 -1.4 threonine synthase compare
BPHYT_RS02045 -2.4 -5.1 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS29855 -2.4 -1.1 protein-tyrosine-phosphatase compare
BPHYT_RS17520 -2.4 -3.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS09465 -2.3 -2.1 transcriptional regulator compare
BPHYT_RS35480 -2.3 -2.2 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS17700 -2.3 -2.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS29620 -2.3 -1.1 hypothetical protein compare
BPHYT_RS16345 -2.3 -3.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS14910 -2.2 -10.2 chorismate mutase compare
BPHYT_RS14855 -2.2 -1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04080 -2.2 -4.1 chloride channel protein compare
BPHYT_RS16710 -2.2 -1.0 LysR family transcriptional regulator compare
BPHYT_RS05025 -2.1 -4.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS18610 -2.1 -6.9 lytic transglycosylase compare
BPHYT_RS13935 -2.1 -1.3 mannosyltransferase compare
BPHYT_RS18705 -2.1 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS02665 -2.1 -10.9 MFS transporter compare
BPHYT_RS03495 -2.0 -2.7 hypothetical protein compare
BPHYT_RS33915 -2.0 -6.1 isopropylmalate isomerase compare
BPHYT_RS14190 -2.0 -2.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS08995 -2.0 -1.2 hypothetical protein compare
BPHYT_RS16435 -2.0 -11.1 alcohol dehydrogenase compare
BPHYT_RS16430 -2.0 -13.8 cytochrome C compare
BPHYT_RS18970 -2.0 -10.8 chemotaxis protein compare
BPHYT_RS06975 -2.0 -1.3 glutamate racemase compare
BPHYT_RS09385 -2.0 -0.9 FAD-dependent oxidoreductase compare
BPHYT_RS24315 -2.0 -1.2 phosphoribosyltransferase compare
BPHYT_RS17890 -2.0 -1.3 shikimate kinase compare
BPHYT_RS10100 -1.9 -3.4 dihydroxy-acid dehydratase compare
BPHYT_RS16340 -1.9 -3.8 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS03280 -1.9 -1.2 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS12465 -1.9 -1.7 inositol monophosphatase compare
BPHYT_RS24630 -1.9 -1.9 (2Fe-2S)-binding protein compare
BPHYT_RS18760 -1.9 -2.1 flagellar biosynthesis protein FliT compare
BPHYT_RS05285 -1.9 -1.2 hypothetical protein compare
BPHYT_RS12055 -1.9 -11.5 phosphoenolpyruvate synthase compare
BPHYT_RS30055 -1.9 -1.9 hypothetical protein compare
BPHYT_RS02650 -1.9 -1.3 membrane protein compare
BPHYT_RS02480 -1.9 -1.8 alkaline phosphatase compare
BPHYT_RS22860 -1.8 -1.0 chemotaxis protein CheY compare
BPHYT_RS18995 -1.8 -5.2 purine-binding chemotaxis protein compare
BPHYT_RS15415 -1.8 -8.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04010 -1.8 -1.2 glycosyl transferase compare
BPHYT_RS33920 -1.8 -3.9 type II citrate synthase compare
BPHYT_RS14900 -1.8 -2.2 prephenate dehydrogenase compare
BPHYT_RS06045 -1.8 -7.2 transaldolase compare
BPHYT_RS14140 -1.8 -4.1 phosphate transporter permease subunit PstC compare
BPHYT_RS06410 -1.8 -2.6 transcriptional regulator compare
BPHYT_RS25970 -1.8 -0.8 urea amidolyase compare
BPHYT_RS07570 -1.8 -1.0 hypothetical protein compare
BPHYT_RS12615 -1.7 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS23570 -1.7 -4.1 chemotaxis protein CheY compare
BPHYT_RS05235 -1.7 -1.1 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS05035 -1.7 -3.3 sugar ABC transporter permease compare
BPHYT_RS30265 -1.7 -1.0 hypothetical protein compare
BPHYT_RS34410 -1.7 -1.2 hypothetical protein compare
BPHYT_RS28705 -1.7 -1.0 IclR family transcriptional regulator compare
BPHYT_RS16665 -1.7 -2.4 peroxiredoxin compare
BPHYT_RS25770 -1.7 -0.7 hypothetical protein compare
BPHYT_RS06915 -1.7 -1.9 hypothetical protein compare
BPHYT_RS06155 -1.7 -5.4 DEAD/DEAH box helicase compare
BPHYT_RS06065 -1.7 -9.1 cytochrome C compare
BPHYT_RS18840 -1.6 -7.5 flagellar hook-associated protein FlgL compare
BPHYT_RS05030 -1.6 -1.4 sugar ABC transporter permease compare
BPHYT_RS07540 -1.6 -0.9 hypothetical protein compare
BPHYT_RS05040 -1.6 -3.5 sugar ABC transporter ATPase compare
BPHYT_RS36300 -1.6 -7.3 hypothetical protein compare
BPHYT_RS06070 -1.6 -6.9 cytochrome C compare
BPHYT_RS18980 -1.6 -5.0 chemotaxis protein CheR compare
BPHYT_RS03065 -1.6 -1.8 LuxR family transcriptional regulator compare
BPHYT_RS08125 -1.6 -7.5 ATPase compare
BPHYT_RS18280 -1.6 -6.0 TetR family transcriptional regulator compare
BPHYT_RS01500 -1.6 -10.9 7-cyano-7-deazaguanine synthase compare
BPHYT_RS17380 -1.6 -7.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS26820 -1.5 -1.2 LysR family transcriptional regulator compare
BPHYT_RS09850 -1.5 -1.2 molybdopterin oxidoreductase compare
BPHYT_RS11075 -1.5 -2.1 membrane protein compare
BPHYT_RS06540 -1.5 -4.6 RNA polymerase sigma70 factor compare
BPHYT_RS04335 -1.5 -1.3 membrane protein compare
BPHYT_RS08245 -1.5 -4.8 anti-sigma factor compare
BPHYT_RS02600 -1.5 -1.5 glutaredoxin compare
BPHYT_RS22215 -1.5 -2.0 hypothetical protein compare
BPHYT_RS12150 -1.5 -8.8 PII uridylyl-transferase compare
BPHYT_RS19000 -1.5 -4.5 chemotaxis protein CheA compare
BPHYT_RS10175 -1.5 -1.4 membrane protein compare
BPHYT_RS17755 -1.4 -5.1 ABC transporter substrate-binding protein compare
BPHYT_RS14185 -1.4 -1.4 transcription elongation factor GreA compare
BPHYT_RS19435 -1.4 -2.0 16S rRNA methyltransferase compare
BPHYT_RS33850 -1.4 -1.1 sporulation protein compare
BPHYT_RS26310 -1.4 -1.5 ribonuclease R compare
BPHYT_RS17530 -1.4 -2.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS08885 -1.4 -6.1 inorganic phosphate transporter compare
BPHYT_RS23920 -1.4 -2.1 malonate decarboxylase subunit beta compare
BPHYT_RS20680 -1.4 -2.1 LacI family transcriptional regulator compare
BPHYT_RS27030 -1.4 -1.0 transcriptional regulator compare
BPHYT_RS04400 -1.4 -1.4 Crp/Fnr family transcriptional regulator compare
BPHYT_RS18845 -1.4 -8.7 flagellar hook-associated protein FlgK conserved
BPHYT_RS05905 -1.4 -1.2 hypothetical protein compare
BPHYT_RS17490 -1.4 -1.7 haloacid dehalogenase compare
BPHYT_RS17185 -1.4 -4.9 N-acetylglutamate synthase compare
BPHYT_RS12590 -1.4 -1.2 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS19015 -1.4 -5.9 flagellar motor protein MotA compare
BPHYT_RS28360 -1.4 -0.9 carboxymuconolactone decarboxylase compare
BPHYT_RS11480 -1.4 -2.3 heme ABC transporter ATP-binding protein compare
BPHYT_RS03685 -1.4 -2.1 Tol system periplasmic component YbgF compare
BPHYT_RS09500 -1.4 -4.0 glucose-6-phosphate isomerase compare
BPHYT_RS18765 -1.4 -4.1 flagellar biosynthesis protein FliS compare
BPHYT_RS09515 -1.4 -0.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS05225 -1.4 -6.4 phosphoenolpyruvate carboxylase compare
BPHYT_RS03645 -1.4 -1.1 tRNA dimethylallyltransferase compare
BPHYT_RS18655 -1.3 -2.7 3-oxoacyl-ACP synthase compare
BPHYT_RS02640 -1.3 -7.6 cytochrome C oxidase compare
BPHYT_RS33905 -1.3 -0.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS00380 -1.3 -2.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS19320 -1.3 -6.3 glycine cleavage system protein T compare
BPHYT_RS02245 -1.3 -1.8 MerR family transcriptional regulator compare
BPHYT_RS16210 -1.3 -3.5 peptidase compare
BPHYT_RS33655 -1.3 -3.0 MarR family transcriptional regulator compare
BPHYT_RS09695 -1.3 -1.9 hypothetical protein compare
BPHYT_RS24925 -1.3 -0.9 cytochrome O ubiquinol oxidase compare
BPHYT_RS21465 -1.3 -3.4 TetR family transcriptional regulator compare
BPHYT_RS18850 -1.3 -5.9 Flagellar brake protein YcgR 1 compare
BPHYT_RS19085 -1.3 -3.5 flagellin compare
BPHYT_RS02595 -1.3 -1.0 sulfurtransferase compare
BPHYT_RS00225 -1.3 -1.7 hypothetical protein compare
BPHYT_RS14345 -1.3 -3.0 beta-hexosaminidase compare
BPHYT_RS04455 -1.2 -1.0 glycosyl transferase compare
BPHYT_RS12985 -1.2 -0.8 amino acid acetyltransferase compare
BPHYT_RS02685 -1.2 -5.0 cytochrome C oxidase subunit I compare
BPHYT_RS32470 -1.2 -1.0 membrane protein compare


Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms