Experiment set28IT063 for Klebsiella michiganensis M5al

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
BWI76_RS09645 -5.1 -2.2 thioredoxin-disulfide reductase compare
BWI76_RS04510 -4.8 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS11965 -4.5 -4.9 orotidine-5'-phosphate decarboxylase compare
BWI76_RS27385 -4.4 -8.5 orotate phosphoribosyltransferase compare
BWI76_RS02995 -4.4 -9.7 aspartate carbamoyltransferase compare
BWI76_RS00400 -3.7 -2.5 glutamine synthetase compare
BWI76_RS15110 -3.7 -13.8 putative excinuclease ABC subunit A compare
BWI76_RS04470 -3.6 -9.1 carbamoyl phosphate synthase large subunit compare
BWI76_RS09910 -3.5 -15.2 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS07065 -3.3 -9.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS07070 -3.3 -5.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS20895 -3.1 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS10990 -3.0 -4.5 dihydroorotase compare
BWI76_RS01615 -2.9 -10.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS04465 -2.9 -6.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS20965 -2.8 -6.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20355 -2.8 -5.2 colicin V production protein compare
BWI76_RS19055 -2.7 -7.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BWI76_RS21265 -2.7 -14.0 phosphoribosylformylglycinamidine synthase compare
BWI76_RS20350 -2.6 -10.2 amidophosphoribosyltransferase compare
BWI76_RS01610 -2.6 -8.4 phosphoribosylamine--glycine ligase compare
BWI76_RS19010 -2.2 -1.5 polysaccharide pyruvyl transferase yvff compare
BWI76_RS23265 -2.2 -4.3 hypothetical protein compare
BWI76_RS20970 -2.2 -2.4 phosphoribosylglycinamide formyltransferase compare
BWI76_RS27390 -2.2 -3.2 ribonuclease PH compare
BWI76_RS00180 -2.1 -1.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS09755 -2.1 -5.1 phosphoserine transaminase compare
BWI76_RS19050 -2.0 -5.4 NAD(P)-dependent oxidoreductase compare
BWI76_RS25600 -1.9 -1.4 tRNA-Thr compare
BWI76_RS00600 -1.9 -6.7 LacI family transcriptional regulator compare
BWI76_RS20900 -1.9 -2.7 outer membrane protein assembly factor BamC compare
BWI76_RS23480 -1.9 -12.0 EAL domain-containing protein compare
BWI76_RS09660 -1.9 -1.2 DNA translocase FtsK compare
BWI76_RS05200 -1.8 -2.4 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS15115 -1.8 -4.0 MFS transporter compare
BWI76_RS08535 -1.8 -1.9 translocation protein TolB compare
BWI76_RS19040 -1.8 -4.2 hypothetical protein compare
BWI76_RS27310 -1.8 -7.8 glycosyltransferase compare
BWI76_RS09655 -1.7 -4.4 leucine-responsive regulatory protein compare
BWI76_RS01630 -1.6 -1.6 16S ribosomal RNA compare
BWI76_RS04530 -1.6 -1.8 peptidylprolyl isomerase SurA compare
BWI76_RS19060 -1.6 -8.3 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS04160 -1.5 -5.2 phosphoserine phosphatase compare
BWI76_RS23920 -1.4 -3.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS15350 -1.4 -1.6 hypothetical protein compare
BWI76_RS12465 -1.4 -1.5 phage shock protein D compare
BWI76_RS07725 -1.4 -1.8 iron-enterobactin transporter permease compare
BWI76_RS09635 -1.3 -1.6 amino acid ABC transporter ATP-binding protein compare
BWI76_RS00140 -1.3 -1.1 phosphate transport system regulator PhoU compare
BWI76_RS16485 -1.3 -1.4 ribonuclease T compare
BWI76_RS26095 -1.3 -1.5 shikimate kinase compare
BWI76_RS01185 -1.2 -2.0 adenylate cyclase compare
BWI76_RS26570 -1.2 -2.0 anion permease compare
BWI76_RS09335 -1.2 -1.4 baseplate assembly protein W compare
BWI76_RS02735 -1.2 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS11520 -1.1 -1.3 hypothetical protein compare
BWI76_RS25065 -1.1 -2.3 polyribonucleotide nucleotidyltransferase compare
BWI76_RS00855 -1.1 -6.0 argininosuccinate lyase compare
BWI76_RS26085 -1.1 -1.2 3-dehydroquinate synthase compare
BWI76_RS05570 -1.1 -1.4 hypothetical protein compare
BWI76_RS14065 -1.1 -1.2 hypothetical protein compare
BWI76_RS21345 -1.1 -1.4 sigma-E factor regulatory protein RseB compare
BWI76_RS21140 -1.0 -1.4 molecular chaperone HscA compare
BWI76_RS27275 -1.0 -5.0 hypothetical protein compare
BWI76_RS14980 -1.0 -1.9 hypothetical protein compare
BWI76_RS16645 -1.0 -2.0 DeoR family transcriptional regulator compare
BWI76_RS01870 -1.0 -2.6 diacylglycerol kinase compare
BWI76_RS07640 -1.0 -1.9 short chain dehydrogenase compare
BWI76_RS01200 -1.0 -1.2 diaminopimelate epimerase compare
BWI76_RS20730 -1.0 -1.6 hypothetical protein compare
BWI76_RS14775 -0.9 -1.3 creatinine amidohydrolase compare
BWI76_RS04525 -0.9 -1.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS25485 -0.9 -1.6 septum formation protein Maf compare
BWI76_RS26590 -0.9 -1.8 transcriptional regulator compare
BWI76_RS11435 -0.9 -1.9 hypothetical protein compare
BWI76_RS15435 -0.9 -1.5 hypothetical protein compare
BWI76_RS01385 -0.9 -1.8 potassium transporter compare
BWI76_RS12145 -0.9 -1.3 hypothetical protein compare
BWI76_RS03010 -0.9 -5.1 ornithine carbamoyltransferase compare
BWI76_RS07785 -0.9 -1.9 transcriptional regulator compare
BWI76_RS08110 -0.9 -1.1 glutamate/aspartate ABC transporter substrate-binding protein compare
BWI76_RS21375 -0.9 -1.7 autonomous glycyl radical cofactor GrcA compare
BWI76_RS19070 -0.9 -4.8 rhamnosyltransferase compare
BWI76_RS24100 -0.9 -2.2 YggS family pyridoxal phosphate enzyme compare
BWI76_RS13595 -0.9 -2.9 transcriptional regulator compare
BWI76_RS18230 -0.9 -2.7 trehalose-6-phosphate synthase compare
BWI76_RS20940 -0.9 -2.6 uracil/xanthine transporter compare
BWI76_RS21370 -0.9 -0.9 ATP-dependent RNA helicase SrmB compare
BWI76_RS24920 -0.9 -2.3 YraN family protein compare
BWI76_RS00440 -0.9 -1.6 CopG family transcriptional regulator compare
BWI76_RS01210 -0.9 -1.0 tyrosine recombinase XerC compare
BWI76_RS09760 -0.8 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS15970 -0.8 -1.7 carboxypeptidase M32 compare
BWI76_RS20995 -0.8 -2.8 RNA degradosome polyphosphate kinase compare
BWI76_RS09530 -0.8 -1.0 hypothetical protein compare
BWI76_RS23895 -0.8 -1.3 Xaa-Pro aminopeptidase compare
BWI76_RS17660 -0.8 -2.0 AraC/XylS familytranscription regulator compare
BWI76_RS15660 -0.8 -0.8 hypothetical protein compare
BWI76_RS04570 -0.8 -3.2 RNA polymerase-associated protein RapA compare
BWI76_RS11105 -0.8 -1.6 aminodeoxychorismate lyase compare
BWI76_RS09630 -0.8 -2.1 leucyl/phenylalanyl-tRNA--protein transferase compare
BWI76_RS23760 -0.8 -1.4 tRNA-Gly compare
BWI76_RS09080 -0.8 -1.4 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS13560 -0.8 -0.8 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS15850 -0.7 -0.6 DUF1317 domain-containing protein compare
BWI76_RS25000 -0.7 -1.5 malonate decarboxylase acyl carrier protein compare
BWI76_RS17190 -0.7 -1.8 TonB system transport protein TonB compare
BWI76_RS16375 -0.7 -2.2 electron transport complex subunit G compare
BWI76_RS04515 -0.7 -1.1 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS19900 -0.7 -2.5 FAD:protein FMN transferase compare
BWI76_RS20435 -0.7 -1.1 chorismate synthase compare
BWI76_RS16455 -0.7 -1.5 superoxide dismutase compare
BWI76_RS12420 -0.7 -1.0 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS20390 -0.7 -1.8 erythronate-4-phosphate dehydrogenase compare
BWI76_RS19970 -0.7 -3.0 anaerobic glycerol-3-phosphate dehydrogenase subunit B compare
BWI76_RS21690 -0.7 -1.2 hypothetical protein compare
BWI76_RS06525 -0.7 -3.1 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS09025 -0.7 -1.0 GntR family transcriptional regulator compare
BWI76_RS08385 -0.7 -2.0 citrate (Si)-synthase compare
BWI76_RS27635 -0.7 -2.0 AraC family transcriptional regulator compare
BWI76_RS07730 -0.7 -1.1 iron-enterobactin transporter membrane protein compare
BWI76_RS23520 -0.7 -1.4 hypothetical protein compare
BWI76_RS09650 -0.7 -2.4 hypothetical protein compare
BWI76_RS13330 -0.7 -1.2 tellurite resistance methyltransferase TehB compare
BWI76_RS27440 -0.7 -2.3 DNA helicase RecG compare
BWI76_RS06765 -0.7 -2.3 transcriptional regulator compare
BWI76_RS05450 -0.7 -1.2 ribonuclease HI compare
BWI76_RS20050 -0.7 -1.1 hypothetical protein compare
BWI76_RS04305 -0.7 -0.6 molecular chaperone DnaJ compare
BWI76_RS19240 -0.7 -1.3 ABC transporter substrate-binding protein compare
BWI76_RS04645 -0.7 -2.4 3-dehydroquinase compare
BWI76_RS17805 -0.7 -1.0 membrane protein compare
BWI76_RS18000 -0.7 -1.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS18065 -0.7 -1.5 DNA polymerase III subunit theta compare
BWI76_RS14490 -0.7 -2.0 ABC transporter substrate-binding protein compare
BWI76_RS15830 -0.7 -1.7 hypothetical protein compare
BWI76_RS16915 -0.6 -1.7 alpha/beta hydrolase fold protein compare
BWI76_RS25115 -0.6 -3.2 argininosuccinate synthase compare
BWI76_RS19850 -0.6 -1.3 tRNA-Pro compare
BWI76_RS09315 -0.6 -1.2 hypothetical protein compare
BWI76_RS20380 -0.6 -0.8 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS24180 -0.6 -1.1 hypothetical protein compare
BWI76_RS02255 -0.6 -2.0 chaperone-modulator protein CbpM compare
BWI76_RS06075 -0.6 -1.6 taurine transporter subunit compare
BWI76_RS00940 -0.6 -2.9 transcriptional regulator HdfR compare
BWI76_RS05835 -0.6 -1.4 gamma-glutamyl-phosphate reductase compare
BWI76_RS22690 -0.6 -1.4 adenylyl-sulfate kinase compare
BWI76_RS01350 -0.6 -0.7 NAD(P)H-flavin reductase compare
BWI76_RS18180 -0.6 -1.9 hypothetical protein compare
BWI76_RS23455 -0.6 -1.7 Na(+)-translocating NADH-quinone reductase subunit E compare
BWI76_RS19035 -0.6 -1.6 dTDP-rhamnosyl transferase compare
BWI76_RS04245 -0.6 -4.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS20005 -0.6 -2.8 membrane protein compare
BWI76_RS16035 -0.6 -1.3 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS06015 -0.6 -1.0 hypothetical protein compare
BWI76_RS14935 -0.6 -0.9 NIPSNAP family containing protein compare
BWI76_RS00965 -0.6 -0.9 acetolactate synthase 2 small subunit compare
BWI76_RS00355 -0.6 -1.2 DNA polymerase I compare
BWI76_RS09110 -0.6 -1.5 glutathione ABC transporter permease GsiD compare
BWI76_RS21075 -0.6 -1.0 membrane protein compare
BWI76_RS16275 -0.6 -1.5 fumarate hydratase FumA compare
BWI76_RS15000 -0.6 -2.0 amino acid ABC transporter ATP-binding protein compare
BWI76_RS25285 -0.6 -0.8 HPr family phosphocarrier protein compare
BWI76_RS27760 -0.6 -1.8 lactam utilization protein LamB compare
BWI76_RS04705 -0.6 -2.4 DNA-binding transcriptional regulator FruR compare
BWI76_RS06250 -0.6 -1.8 alpha-glycosidase compare
BWI76_RS07825 -0.6 -2.7 S-methyl-5-thioribose-1-phosphate isomerase compare
BWI76_RS13275 -0.6 -1.2 hypothetical protein compare
BWI76_RS11235 -0.6 -0.8 hypothetical protein compare
BWI76_RS01885 -0.6 -0.8 CsbD family protein compare
BWI76_RS09960 -0.6 -1.8 Lon protease compare
BWI76_RS06530 -0.6 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS24025 -0.6 -3.5 agmatinase compare
BWI76_RS16980 -0.6 -2.3 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS06475 -0.6 -1.1 protoheme IX farnesyltransferase compare
BWI76_RS20650 -0.6 -0.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS25070 -0.6 -0.9 hypothetical protein compare
BWI76_RS14075 -0.6 -0.5 TetR family transcriptional regulator compare
BWI76_RS12500 -0.6 -1.1 dipeptide epimerase compare
BWI76_RS26200 -0.5 -2.7 starch synthase compare
BWI76_RS01220 -0.5 -3.2 DNA-dependent helicase II compare
BWI76_RS16870 -0.5 -2.1 LysR family transcriptional regulator compare
BWI76_RS11790 -0.5 -1.5 acyl-CoA thioesterase compare
BWI76_RS08820 -0.5 -1.9 molybdenum cofactor biosynthesis protein compare
BWI76_RS00660 -0.5 -2.3 ABC transporter compare
BWI76_RS11050 -0.5 -1.9 23S rRNA pseudouridine(955/2504/2580) synthase compare
BWI76_RS27200 -0.5 -2.0 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
BWI76_RS18190 -0.5 -1.8 carboxy-S-adenosyl-L-methionine synthase CmoA compare
BWI76_RS15695 -0.5 -2.4 hypothetical protein compare
BWI76_RS00390 -0.5 -2.6 two-component system sensor histidine kinase NtrB compare
BWI76_RS27435 -0.5 -2.5 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS22765 -0.5 -3.2 sulfite reductase subunit alpha compare
BWI76_RS13425 -0.5 -1.9 1-pyrroline dehydrogenase compare
BWI76_RS22960 -0.5 -1.5 YgdI/YgdR family lipoprotein compare
BWI76_RS13600 -0.5 -1.6 hypothetical protein compare
BWI76_RS06465 -0.5 -0.9 IclR family transcriptional regulator compare
BWI76_RS17895 -0.5 -1.8 PTS mannose/fructose/sorbose transporter subunit IIC compare
BWI76_RS02225 -0.5 -1.7 phosphonate C-P lyase system protein PhnG compare
BWI76_RS00850 -0.5 -3.7 acetylglutamate kinase compare
BWI76_RS26620 -0.5 -0.6 Fe-S biogenesis protein NfuA compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms