Experiment set28IT059 for Klebsiella michiganensis M5al
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Group: supernatantMedia: R2A + supernatant from Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered (0.2 X)
Culturing: Koxy_ML2a, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Cat_Manuel on 17-Aug-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Specific Phenotypes
For 10 genes in this experiment
SEED Subsystems
Subsystem | #Specific |
---|---|
Iron acquisition in Vibrio | 3 |
Siderophore Aerobactin | 3 |
Bacterial Cell Division | 1 |
Bacterial Cytoskeleton | 1 |
Orphan regulatory proteins | 1 |
Peptidoglycan Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
Pathway | #Steps | #Present | #Specific |
---|---|---|---|
peptidoglycan biosynthesis I (meso-diaminopimelate containing) | 12 | 12 | 1 |
peptidoglycan maturation (meso-diaminopimelate containing) | 12 | 5 | 1 |