Experiment set28IT044 for Burkholderia phytofirmans PsJN

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P. phyto PHYTO2 MOI 1

Group: phage
Media: LB_plus_SM_buffer + Kan (50 ug/ml)
Culturing: BFirm_ML3a, 48 well microplate; Epoch2, Aerobic, at 30 (C), shaken=double orbital, continuous, 205cpm
By: Vivek on 12/15/22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride

Specific Phenotypes

For 3 genes in this experiment

SEED Subsystems

Subsystem #Specific
Histidine Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
3-(4-hydroxyphenyl)pyruvate biosynthesis 1 1 1
L-tyrosine degradation II 2 1 1
atromentin biosynthesis 2 1 1
L-tyrosine biosynthesis I 3 3 1
L-phenylalanine biosynthesis I 3 3 1
L-phenylalanine degradation II (anaerobic) 3 2 1
L-tyrosine degradation IV (to 4-methylphenol) 3 1 1
L-tyrosine degradation III 4 2 1
L-phenylalanine degradation III 4 2 1
L-tyrosine degradation I 5 5 1
superpathway of plastoquinol biosynthesis 5 2 1
4-hydroxybenzoate biosynthesis I (eukaryotes) 5 1 1
L-phenylalanine degradation VI (reductive Stickland reaction) 5 1 1
L-tyrosine degradation V (reductive Stickland reaction) 5 1 1
superpathway of aromatic amino acid biosynthesis 18 18 2
L-phenylalanine degradation IV (mammalian, via side chain) 9 6 1
L-histidine biosynthesis 10 10 1
superpathway of L-tyrosine biosynthesis 10 10 1
superpathway of L-phenylalanine biosynthesis 10 10 1
rosmarinic acid biosynthesis I 10 1 1
(S)-reticuline biosynthesis I 11 3 1
superpathway of rosmarinic acid biosynthesis 14 2 1
anaerobic aromatic compound degradation (Thauera aromatica) 27 5 1
superpathway of chorismate metabolism 59 42 2
superpathway of histidine, purine, and pyrimidine biosynthesis 46 44 1