Experiment set27S471 for Pseudomonas fluorescens SBW25-INTG

Compare to:

4-Acetoxy-3-methoxycinnamic acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS06765 -4.8 -7.3 4-carboxymuconolactone decarboxylase compare
PFLU_RS03240 -4.1 -16.4 copper-translocating P-type ATPase compare
PFLU_RS04465 -4.0 -10.8 ATP phosphoribosyltransferase compare
PFLU_RS28535 -3.9 -17.5 dihydroxy-acid dehydratase compare
PFLU_RS16070 -3.9 -9.3 feruloyl-CoA synthase compare
PFLU_RS07650 -3.8 -14.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS16080 -3.8 -12.2 p-hydroxycinnamoyl CoA hydratase/lyase compare
PFLU_RS16050 -3.8 -7.9 oxidoreductase conserved
PFLU_RS25640 -3.8 -14.5 ketol-acid reductoisomerase compare
PFLU_RS06760 -3.7 -12.9 3-oxoadipate enol-lactonase compare
PFLU_RS20580 -3.7 -13.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS06735 -3.7 -8.8 3-oxoadipyl-CoA thiolase compare
PFLU_RS28695 -3.7 -10.2 phosphoglycerate dehydrogenase compare
PFLU_RS27365 -3.5 -11.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS22835 -3.5 -9.3 amidotransferase compare
PFLU_RS25360 -3.5 -9.2 glutamate 5-kinase compare
PFLU_RS29880 -3.5 -17.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS29875 -3.4 -19.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS02490 -3.4 -15.5 phosphoserine phosphatase SerB compare
PFLU_RS06740 -3.4 -12.7 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS27370 -3.4 -14.8 anthranilate phosphoribosyltransferase compare
PFLU_RS02365 -3.4 -12.4 glycosyltransferase compare
PFLU_RS20565 -3.3 -16.4 3-isopropylmalate dehydrogenase compare
PFLU_RS04930 -3.3 -14.6 PhoH family protein compare
PFLU_RS20575 -3.3 -7.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27685 -3.3 -17.2 malate synthase G compare
PFLU_RS08505 -3.3 -7.2 protease HtpX compare
PFLU_RS06755 -3.3 -11.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS22095 -3.2 -18.0 GTP diphosphokinase compare
PFLU_RS20540 -3.2 -12.6 phosphoribosylanthranilate isomerase compare
PFLU_RS23355 -3.2 -26.6 acetate--CoA ligase compare
PFLU_RS06730 -3.2 -12.9 CoA-transferase subunit beta compare
PFLU_RS12980 -3.2 -8.6 nitrite/sulfite reductase compare
PFLU_RS24765 -3.2 -21.9 2-isopropylmalate synthase compare
PFLU_RS12975 -3.1 -5.5 DUF934 domain-containing protein compare
PFLU_RS26020 -3.1 -14.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS28390 -3.1 -12.6 methionine biosynthesis protein MetW compare
PFLU_RS28645 -3.1 -16.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS02590 -3.1 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS06055 -3.1 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS25715 -3.0 -8.7 RNA polymerase-binding protein DksA compare
PFLU_RS06745 -3.0 -6.6 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS26565 -3.0 -2.6 rRNA maturation RNase YbeY compare
PFLU_RS29095 -3.0 -22.6 polyphosphate kinase 1 compare
PFLU_RS19170 -2.9 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS06725 -2.9 -10.6 CoA transferase subunit A compare
PFLU_RS02370 -2.9 -11.0 glycosyltransferase compare
PFLU_RS20510 -2.9 -14.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS16090 -2.9 -14.7 OprD family porin compare
PFLU_RS28385 -2.9 -14.8 homoserine O-acetyltransferase compare
PFLU_RS01605 -2.9 -8.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS06715 -2.9 -12.2 IclR family transcriptional regulator compare
PFLU_RS18505 -2.9 -8.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS29760 -2.8 -9.5 phosphate ABC transporter permease PstA compare
PFLU_RS19175 -2.8 -6.5 trigger factor compare
PFLU_RS29885 -2.8 -12.9 LysR family transcriptional regulator compare
PFLU_RS04470 -2.8 -12.1 histidinol dehydrogenase compare
PFLU_RS00175 -2.8 -8.2 tryptophan synthase subunit alpha compare
PFLU_RS21965 -2.8 -16.7 transporter compare
PFLU_RS28165 -2.7 -13.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS16045 -2.7 -7.0 aromatic ring-hydroxylating dioxygenase subunit alpha conserved
PFLU_RS01620 -2.7 -9.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS21300 -2.7 -5.1 cysteine hydrolase compare
PFLU_RS01625 -2.7 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28655 -2.7 -13.2 HAD family hydrolase compare
PFLU_RS25645 -2.6 -2.5 acetolactate synthase small subunit compare
PFLU_RS25750 -2.6 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS06130 -2.6 -12.6 phosphoenolpyruvate carboxylase compare
PFLU_RS15410 -2.6 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS01610 -2.5 -11.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS00180 -2.5 -8.1 tryptophan synthase subunit beta compare
PFLU_RS16075 -2.5 -5.7 aldehyde dehydrogenase compare
PFLU_RS23680 -2.4 -16.2 long-chain fatty acid--CoA ligase compare
PFLU_RS28650 -2.4 -6.3 RNA pyrophosphohydrolase compare
PFLU_RS18530 -2.4 -4.9 DNA translocase FtsK compare
PFLU_RS23920 -2.3 -3.0 septation protein A compare
PFLU_RS06815 -2.3 -9.0 TetR family transcriptional regulator compare
PFLU_RS03970 -2.3 -11.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20625 -2.3 -4.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS19165 -2.3 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS01900 -2.3 -7.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24790 -2.3 -5.6 tetratricopeptide repeat protein compare
PFLU_RS29490 -2.2 -8.3 ribonuclease PH compare
PFLU_RS27690 -2.2 -3.3 response regulator compare
PFLU_RS09055 -2.2 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS20515 -2.2 -4.9 amidophosphoribosyltransferase compare
PFLU_RS25800 -2.1 -6.0 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS07765 -2.1 -9.1 cupredoxin family protein compare
PFLU_RS07685 -2.1 -4.9 transcriptional repressor LexA compare
PFLU_RS27475 -2.1 -4.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS22075 -2.0 -10.2 DUF3108 domain-containing protein compare
PFLU_RS26905 -2.0 -10.2 transcriptional regulator NrdR compare
PFLU_RS27620 -2.0 -14.2 acyl-CoA dehydrogenase compare
PFLU_RS30345 -2.0 -2.7 DUF2559 family protein compare
PFLU_RS16095 -1.9 -10.0 3-(3-hydroxy-phenyl)propionate transporter MhpT conserved
PFLU_RS04150 -1.9 -6.8 DUF1043 family protein compare
PFLU_RS26635 -1.9 -3.3 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS28325 -1.9 -4.7 energy transducer TonB compare
PFLU_RS22740 -1.9 -4.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS27305 -1.8 -10.1 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS25730 -1.8 -8.8 PAS domain S-box protein compare
PFLU_RS01320 -1.8 -8.5 phosphoenolpyruvate carboxykinase compare
PFLU_RS21425 -1.8 -3.8 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS27440 -1.8 -6.1 nucleotidyltransferase family protein compare
PFLU_RS29550 -1.7 -7.4 ATP-dependent DNA helicase RecG compare
PFLU_RS07665 -1.7 -2.8 type I DNA topoisomerase compare
PFLU_RS23240 -1.7 -8.0 magnesium transporter compare
PFLU_RS23065 -1.7 -8.9 phosphate acyltransferase PlsX compare
PFLU_RS07695 -1.7 -2.8 beta-N-acetylhexosaminidase compare
PFLU_RS24785 -1.7 -8.3 outer membrane protein assembly factor BamB compare
PFLU_RS08065 -1.7 -7.0 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS01965 -1.7 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS04935 -1.7 -5.2 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS24085 -1.7 -3.1 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS09980 -1.7 -12.1 peptidase S41 compare
PFLU_RS07970 -1.7 -11.3 LOG family protein compare
PFLU_RS04330 -1.7 -11.9 TIGR02099 family protein compare
PFLU_RS30730 -1.7 -3.1 helix-turn-helix domain-containing protein compare
PFLU_RS23305 -1.7 -8.8 arginine N-succinyltransferase compare
PFLU_RS23070 -1.6 -2.0 50S ribosomal protein L32 compare
PFLU_RS05210 -1.6 -2.0 HU family DNA-binding protein compare
PFLU_RS18395 -1.6 -1.1 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS04220 -1.6 -7.3 FadR family transcriptional regulator compare
PFLU_RS02355 -1.6 -6.0 GNAT family N-acetyltransferase compare
PFLU_RS08410 -1.6 -6.5 HTH-type transcriptional regulator CysB compare
PFLU_RS29215 -1.6 -9.7 response regulator transcription factor compare
PFLU_RS04715 -1.6 -4.6 D-alanine--D-alanine ligase compare
PFLU_RS23310 -1.6 -7.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS04325 -1.6 -10.7 ribonuclease G compare
PFLU_RS18610 -1.6 -10.1 isocitrate lyase compare
PFLU_RS27445 -1.5 -12.1 phosphotransferase compare
PFLU_RS31590 -1.5 -2.1 hypothetical protein compare
PFLU_RS07640 -1.5 -8.4 universal stress protein compare
PFLU_RS08165 -1.5 -1.8 acyl carrier protein compare
PFLU_RS26640 -1.5 -6.5 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS04430 -1.5 -5.7 ATP-binding cassette domain-containing protein compare
PFLU_RS03765 -1.5 -7.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS04315 -1.5 -3.3 rod shape-determining protein MreD compare
PFLU_RS14820 -1.5 -4.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS25225 -1.5 -6.0 disulfide bond formation protein B compare
PFLU_RS24025 -1.5 -8.3 quinolinate synthase NadA compare
PFLU_RS03645 -1.4 -6.2 tetratricopeptide repeat protein compare
PFLU_RS11525 -1.4 -4.0 GntR family transcriptional regulator compare
PFLU_RS08485 -1.4 -1.5 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS00415 -1.4 -1.3 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS05965 -1.4 -2.1 hypothetical protein compare
PFLU_RS08160 -1.4 -6.1 sugar transferase compare
PFLU_RS00530 -1.4 -2.6 DUF2388 domain-containing protein compare
PFLU_RS29735 -1.4 -8.4 HlyC/CorC family transporter compare
PFLU_RS21060 -1.4 -3.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS18635 -1.4 -2.5 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS21935 -1.4 -10.5 sensor histidine kinase compare
PFLU_RS24205 -1.4 -1.5 DNA binding protein compare
PFLU_RS03770 -1.4 -9.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS07785 -1.4 -7.0 VacJ family lipoprotein compare
PFLU_RS25735 -1.4 -1.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS26770 -1.3 -8.5 DedA family protein compare
PFLU_RS24670 -1.3 -2.5 HigA family addiction module antidote protein compare
PFLU_RS18670 -1.3 -1.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS26545 -1.3 -7.1 sel1 repeat family protein compare
PFLU_RS25315 -1.3 -5.2 dihydroneopterin triphosphate 2'-epimerase compare
PFLU_RS18655 -1.3 -1.8 NADH-quinone oxidoreductase subunit J compare
PFLU_RS23430 -1.3 -4.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS29900 -1.3 -7.8 DNA helicase II compare
PFLU_RS14550 -1.3 -5.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS24090 -1.3 -2.4 Holliday junction branch migration protein RuvA compare
PFLU_RS21665 -1.3 -4.1 MinD/ParA family protein compare
PFLU_RS01895 -1.3 -4.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS07245 -1.3 -6.3 DegQ family serine endoprotease compare
PFLU_RS22190 -1.3 -1.5 hypothetical protein compare
PFLU_RS06395 -1.3 -7.2 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
PFLU_RS18755 -1.3 -6.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS24125 -1.3 -2.2 cold-shock protein compare
PFLU_RS24095 -1.3 -1.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS18665 -1.3 -2.9 NADH-quinone oxidoreductase subunit L compare
PFLU_RS22605 -1.3 -5.7 mechanosensitive ion channel compare
PFLU_RS22105 -1.2 -3.3 cysteine synthase CysM compare
PFLU_RS23730 -1.2 -8.4 MurR/RpiR family transcriptional regulator compare
PFLU_RS03235 -1.2 -4.9 Cu(I)-responsive transcriptional regulator compare
PFLU_RS29290 -1.2 -2.6 hypothetical protein compare
PFLU_RS25755 -1.2 -0.8 pantoate--beta-alanine ligase compare
PFLU_RS01955 -1.2 -5.6 DUF971 domain-containing protein compare
PFLU_RS19160 -1.2 -7.0 endopeptidase La compare
PFLU_RS13945 -1.2 -2.3 hypothetical protein compare
PFLU_RS21215 -1.2 -2.1 YheU family protein compare
PFLU_RS00435 -1.2 -9.0 PAS domain-containing protein compare
PFLU_RS24145 -1.2 -3.2 mechanosensitive ion channel compare
PFLU_RS25760 -1.2 -2.7 glucose-6-phosphate isomerase compare
PFLU_RS30590 -1.2 -1.8 hypothetical protein compare
PFLU_RS26735 -1.2 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS07810 -1.2 -8.6 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS08370 -1.1 -3.0 hypothetical protein compare
PFLU_RS13540 -1.1 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08670 -1.1 -5.1 heme lyase CcmF/NrfE family subunit compare
PFLU_RS05885 -1.1 -2.3 recombinase RecA compare
PFLU_RS01645 -1.1 -6.0 S41 family peptidase compare
PFLU_RS08660 -1.1 -2.5 heme exporter protein CcmD compare
PFLU_RS19935 -1.1 -1.7 type II secretion system protein GspF compare
PFLU_RS07655 -1.1 -3.9 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS08685 -1.1 -5.8 c-type cytochrome biogenesis protein CcmI compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source 4-Acetoxy-3-methoxycinnamic acid in Pseudomonas fluorescens SBW25-INTG

For carbon source 4-Acetoxy-3-methoxycinnamic acid across organisms