Experiment set27S471 for Pseudomonas fluorescens SBW25-INTG

Compare to:

4-Acetoxy-3-methoxycinnamic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS21795 +3.0 27.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS12395 +2.9 5.0 zinc ribbon domain-containing protein compare
PFLU_RS21780 +2.2 10.4 flagellar hook-basal body complex protein FliE compare
PFLU_RS21855 +2.1 16.1 flagellar basal-body rod protein FlgG compare
PFLU_RS21695 +2.0 15.2 flagellar biosynthesis protein FlhB compare
PFLU_RS21860 +2.0 12.4 flagellar basal body rod protein FlgF compare
PFLU_RS21845 +2.0 14.5 flagellar basal body P-ring protein FlgI compare
PFLU_RS21700 +2.0 11.4 flagellar type III secretion system protein FliR compare
PFLU_RS23165 +1.9 18.0 flagellar hook protein FlgE compare
PFLU_RS21705 +1.9 12.8 flagellar biosynthesis protein FliQ compare
PFLU_RS21850 +1.9 16.9 flagellar basal body L-ring protein FlgH compare
PFLU_RS21775 +1.9 15.8 flagellar basal body M-ring protein FliF compare
PFLU_RS21710 +1.9 13.3 flagellar type III secretion system pore protein FliP compare
PFLU_RS23180 +1.9 13.6 flagellar basal body rod protein FlgB compare
PFLU_RS21675 +1.9 16.4 flagellar biosynthesis protein FlhA compare
PFLU_RS23195 +1.9 16.5 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS23175 +1.9 12.0 flagellar basal body rod protein FlgC compare
PFLU_RS21765 +1.9 12.4 flagellar assembly protein FliH compare
PFLU_RS21660 +1.9 15.6 RNA polymerase sigma factor FliA compare
PFLU_RS21760 +1.8 15.9 flagellar protein export ATPase FliI compare
PFLU_RS21755 +1.8 13.3 flagella biosynthesis chaperone FliJ compare
PFLU_RS25865 +1.8 4.3 YhbY family RNA-binding protein compare
PFLU_RS21725 +1.8 13.2 flagellar motor switch protein FliM compare
PFLU_RS21735 +1.8 15.2 flagellar hook-length control protein FliK compare
PFLU_RS06800 +1.8 13.2 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS00460 +1.8 14.8 glutamate/aspartate:proton symporter GltP compare
PFLU_RS00040 +1.8 16.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS21770 +1.8 13.0 flagellar motor switch protein FliG compare
PFLU_RS23205 +1.8 13.6 flagellar protein FlgN compare
PFLU_RS21840 +1.7 13.0 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS02515 +1.7 7.8 flagellar motor protein MotB compare
PFLU_RS06810 +1.7 12.7 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS21730 +1.7 11.5 flagellar basal body-associated protein FliL compare
PFLU_RS05720 +1.7 13.9 OmpA family protein compare
PFLU_RS06805 +1.7 15.3 efflux RND transporter permease subunit compare
PFLU_RS29810 +1.7 13.0 LysR family transcriptional regulator compare
PFLU_RS21835 +1.7 14.8 flagellar hook-associated protein FlgK compare
PFLU_RS21810 +1.6 14.8 flagellar filament capping protein FliD compare
PFLU_RS21830 +1.6 14.8 flagellar hook-associated protein 3 compare
PFLU_RS02510 +1.6 13.4 flagellar motor stator protein MotA compare
PFLU_RS01875 +1.6 3.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS14715 +1.6 10.1 protein-glutamate O-methyltransferase CheR compare
PFLU_RS18000 +1.5 2.2 AhpC/TSA family protein compare
PFLU_RS02275 +1.4 3.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS12260 +1.4 2.5 hypothetical protein compare
PFLU_RS21610 +1.3 9.3 DUF2802 domain-containing protein compare
PFLU_RS21805 +1.3 10.5 flagellar export chaperone FliS compare
PFLU_RS17895 +1.3 5.5 glycosyltransferase family 2 protein compare
PFLU_RS21820 +1.3 10.4 flagellin compare
PFLU_RS00445 +1.3 4.7 hypothetical protein compare
PFLU_RS21790 +1.2 7.9 PAS domain-containing protein compare
PFLU_RS29480 +1.2 10.3 exodeoxyribonuclease III compare
PFLU_RS17130 +1.2 5.3 protein BatD compare
PFLU_RS02980 +1.2 2.5 precorrin-8X methylmutase compare
PFLU_RS23170 +1.2 5.8 flagellar hook assembly protein FlgD compare
PFLU_RS18885 +1.2 2.9 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS24175 +1.2 7.9 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS02575 +1.1 7.8 GTPase HflX compare
PFLU_RS15990 +1.1 1.7 SDR family oxidoreductase compare
PFLU_RS17525 +1.1 3.0 NUDIX domain-containing protein compare
PFLU_RS13765 +1.1 2.2 hypothetical protein compare
PFLU_RS10300 +1.1 9.6 transaldolase compare
PFLU_RS29780 +1.1 7.3 acyl-CoA thioesterase compare
PFLU_RS10295 +1.1 4.9 HAD-IA family hydrolase compare
PFLU_RS13715 +1.1 1.5 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS23325 +1.1 8.1 GlxA family transcriptional regulator compare
PFLU_RS22600 +1.0 2.5 RNA polymerase sigma factor SigX compare
PFLU_RS21670 +1.0 6.1 flagellar biosynthesis protein FlhF compare
PFLU_RS09500 +1.0 1.2 hypothetical protein compare
PFLU_RS21785 +1.0 7.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29400 +1.0 1.8 DUF1127 domain-containing protein compare
PFLU_RS15895 +1.0 4.1 MFS transporter compare
PFLU_RS08990 +1.0 2.9 hypothetical protein compare
PFLU_RS31010 +1.0 1.2 transposase compare
PFLU_RS01660 +0.9 1.9 rhodanese-like domain-containing protein compare
PFLU_RS26955 +0.9 7.5 sugar nucleotide-binding protein compare
PFLU_RS27805 +0.9 2.2 sarcosine oxidase subunit gamma family protein compare
PFLU_RS00695 +0.9 1.3 DUF2789 domain-containing protein compare
PFLU_RS03575 +0.9 2.7 hypothetical protein compare
PFLU_RS08600 +0.9 4.1 glutaredoxin family protein compare
PFLU_RS29815 +0.9 4.5 aspartate ammonia-lyase compare
PFLU_RS06165 +0.9 2.9 hypothetical protein compare
PFLU_RS24690 +0.9 7.2 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS14875 +0.9 3.7 hypothetical protein compare
PFLU_RS22535 +0.9 7.4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS10320 +0.9 6.3 class I SAM-dependent methyltransferase compare
PFLU_RS17105 +0.9 4.0 MoxR family ATPase compare
PFLU_RS06630 +0.9 3.6 ABC transporter ATP-binding protein compare
PFLU_RS23350 +0.9 6.2 ABC transporter substrate-binding protein compare
PFLU_RS07235 +0.8 3.4 sigma factor AlgU negative regulatory protein compare
PFLU_RS24905 +0.8 6.8 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
PFLU_RS00440 +0.8 6.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02000 +0.8 7.8 penicillin-binding protein 1A compare
PFLU_RS09675 +0.8 3.8 hypothetical protein compare
PFLU_RS08375 +0.8 6.7 N-acetyltransferase compare
PFLU_RS25040 +0.8 1.9 DUF3077 domain-containing protein compare
PFLU_RS23260 +0.8 4.0 carbon storage regulator CsrA compare
PFLU_RS27975 +0.8 3.1 choline ABC transporter ATP-binding protein compare
PFLU_RS12685 +0.8 2.6 hypothetical protein compare
PFLU_RS23345 +0.8 6.3 ABC transporter permease compare
PFLU_RS21615 +0.8 4.8 chemotaxis protein CheW compare
PFLU_RS25200 +0.8 4.7 protoheme IX farnesyltransferase compare
PFLU_RS31510 +0.8 1.6 transcriptional regulator compare
PFLU_RS16495 +0.8 3.2 LysR family transcriptional regulator compare
PFLU_RS07630 +0.8 6.6 transglycosylase SLT domain-containing protein compare
PFLU_RS11850 +0.8 1.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS23095 +0.8 4.6 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
PFLU_RS08735 +0.7 1.3 histidine phosphatase family protein compare
PFLU_RS25215 +0.7 5.2 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS31840 +0.7 1.8 hypothetical protein compare
PFLU_RS28910 +0.7 5.1 glycine cleavage system protein GcvH compare
PFLU_RS01020 +0.7 1.2 LysR family transcriptional regulator compare
PFLU_RS19805 +0.7 2.0 LysR family transcriptional regulator compare
PFLU_RS04490 +0.7 3.1 hypoxanthine-guanine phosphoribosyltransferase compare
PFLU_RS09190 +0.7 1.4 hypothetical protein compare
PFLU_RS31545 +0.7 2.1 LysR family transcriptional regulator compare
PFLU_RS00155 +0.7 4.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS12380 +0.7 3.3 GntR family transcriptional regulator compare
PFLU_RS11415 +0.7 1.3 protein glxC compare
PFLU_RS21640 +0.7 4.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS21485 +0.7 3.1 response regulator compare
PFLU_RS14320 +0.7 1.0 DUF2946 domain-containing protein compare
PFLU_RS23475 +0.7 2.7 peptidase M4 compare
PFLU_RS01500 +0.7 2.0 cell division protein FtsQ compare
PFLU_RS17125 +0.7 4.7 VWA domain-containing protein compare
PFLU_RS17120 +0.7 3.5 VWA domain-containing protein compare
PFLU_RS31215 +0.7 2.1 hypothetical protein compare
PFLU_RS31475 +0.7 1.9 hypothetical protein compare
PFLU_RS13105 +0.7 2.2 nuclear transport factor 2 family protein compare
PFLU_RS01880 +0.7 4.9 twin-arginine translocase subunit TatC compare
PFLU_RS20550 +0.7 5.8 FimV family protein compare
PFLU_RS15200 +0.7 1.8 ABC transporter substrate-binding protein compare
PFLU_RS20015 +0.7 1.6 transporter compare
PFLU_RS14370 +0.7 1.8 hypothetical protein compare
PFLU_RS03245 +0.6 4.8 hypothetical protein compare
PFLU_RS23005 +0.6 4.8 DUF4823 domain-containing protein compare
PFLU_RS01130 +0.6 3.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS04155 +0.6 3.8 alpha/beta fold hydrolase compare
PFLU_RS17110 +0.6 2.6 DUF58 domain-containing protein compare
PFLU_RS10310 +0.6 3.6 SDR family oxidoreductase compare
PFLU_RS05660 +0.6 5.1 glycerol kinase GlpK compare
PFLU_RS00455 +0.6 2.1 hypothetical protein compare
PFLU_RS24040 +0.6 4.7 7-cyano-7-deazaguanine synthase QueC compare
PFLU_RS18800 +0.6 3.0 branched-chain amino acid ABC transporter permease compare
PFLU_RS13375 +0.6 2.3 carbohydrate kinase compare
PFLU_RS01850 +0.6 4.4 transporter substrate-binding domain-containing protein compare
PFLU_RS19915 +0.6 1.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS19910 +0.6 1.3 hypothetical protein compare
PFLU_RS28990 +0.6 5.0 flagellar basal body-associated protein FliL compare
PFLU_RS18295 +0.6 2.4 helix-turn-helix domain-containing protein compare
PFLU_RS27695 +0.6 4.7 CBS domain-containing protein compare
PFLU_RS01510 +0.6 3.9 cell division protein FtsQ compare
PFLU_RS29555 +0.6 5.1 HDOD domain-containing protein compare
PFLU_RS21900 +0.6 2.0 hypothetical protein compare
PFLU_RS00750 +0.6 2.2 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
PFLU_RS05020 +0.6 0.7 DUF1120 domain-containing protein compare
PFLU_RS30485 +0.6 2.1 hypothetical protein compare
PFLU_RS01885 +0.6 3.7 Sec-independent protein translocase subunit TatB compare
PFLU_RS31535 +0.6 1.2 hypothetical protein compare
PFLU_RS11705 +0.6 2.0 TIM barrel protein compare
PFLU_RS02455 +0.6 1.2 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS29705 +0.6 3.8 rubredoxin compare
PFLU_RS09845 +0.6 1.3 biotin carboxyl carrier domain-containing protein compare
PFLU_RS14960 +0.6 3.7 SDR family oxidoreductase compare
PFLU_RS14430 +0.6 1.5 arsenate reductase ArsC compare
PFLU_RS04200 +0.6 5.2 cytochrome bc complex cytochrome b subunit compare
PFLU_RS30855 +0.6 2.3 MerR family transcriptional regulator compare
PFLU_RS15215 +0.6 2.1 cytochrome b compare
PFLU_RS10305 +0.6 4.0 sulfotransferase family protein compare
PFLU_RS10595 +0.6 1.8 hypothetical protein compare
PFLU_RS02045 +0.6 5.5 glutamate synthase large subunit compare
PFLU_RS10835 +0.6 1.0 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS00080 +0.6 3.4 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
PFLU_RS21910 +0.6 5.3 BamA/TamA family outer membrane protein compare
PFLU_RS01475 +0.6 5.1 UDP-forming cellulose synthase catalytic subunit compare
PFLU_RS12840 +0.6 1.3 3-hydroxybutyrate dehydrogenase compare
PFLU_RS17855 +0.6 1.8 YjbF family lipoprotein compare
PFLU_RS10315 +0.6 3.7 hypothetical protein compare
PFLU_RS20545 +0.6 3.3 tRNA pseudouridine(38-40) synthase TruA compare
PFLU_RS21480 +0.6 3.2 two-component sensor histidine kinase compare
PFLU_RS15245 +0.6 2.3 response regulator compare
PFLU_RS23340 +0.6 5.0 ABC transporter permease compare
PFLU_RS15600 +0.6 2.1 ketoacyl-ACP synthase III compare
PFLU_RS15785 +0.6 1.7 type II secretion system protein GspH compare
PFLU_RS28310 +0.6 0.8 response regulator compare
PFLU_RS04205 +0.6 4.4 cytochrome c1 compare
PFLU_RS18900 +0.6 3.2 HlyD family efflux transporter periplasmic adaptor subunit compare
PFLU_RS31075 +0.6 3.3 hypothetical protein compare
PFLU_RS23365 +0.6 3.7 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS17115 +0.6 3.6 DUF4381 domain-containing protein compare
PFLU_RS24280 +0.6 2.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS16120 +0.6 2.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS23330 +0.6 2.3 ATP-binding cassette domain-containing protein compare
PFLU_RS02350 +0.6 3.8 carbamoyltransferase compare
PFLU_RS23855 +0.6 2.2 aminoacyl-tRNA hydrolase compare
PFLU_RS10605 +0.5 2.5 CBS domain-containing protein compare
PFLU_RS13950 +0.5 1.5 hypothetical protein compare
PFLU_RS08615 +0.5 1.1 YgdI/YgdR family lipoprotein compare
PFLU_RS19495 +0.5 2.5 SDR family oxidoreductase compare
PFLU_RS07770 +0.5 4.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source 4-Acetoxy-3-methoxycinnamic acid in Pseudomonas fluorescens SBW25-INTG

For carbon source 4-Acetoxy-3-methoxycinnamic acid across organisms