Experiment set27S470 for Pseudomonas fluorescens SBW25-INTG

Compare to:

4-Acetoxy-3-methoxycinnamic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS12395 +2.7 5.3 zinc ribbon domain-containing protein compare
PFLU_RS21795 +2.5 23.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02275 +2.3 6.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS29810 +2.3 17.1 LysR family transcriptional regulator compare
PFLU_RS00460 +2.3 19.3 glutamate/aspartate:proton symporter GltP compare
PFLU_RS00040 +2.3 20.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS06800 +2.0 15.1 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS29480 +2.0 17.4 exodeoxyribonuclease III compare
PFLU_RS25865 +1.9 5.3 YhbY family RNA-binding protein compare
PFLU_RS06810 +1.9 13.6 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS21780 +1.9 8.2 flagellar hook-basal body complex protein FliE compare
PFLU_RS06805 +1.8 17.2 efflux RND transporter permease subunit compare
PFLU_RS24175 +1.8 12.7 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS00445 +1.7 5.3 hypothetical protein compare
PFLU_RS21855 +1.7 12.7 flagellar basal-body rod protein FlgG compare
PFLU_RS21695 +1.6 12.2 flagellar biosynthesis protein FlhB compare
PFLU_RS21710 +1.6 11.7 flagellar type III secretion system pore protein FliP compare
PFLU_RS14715 +1.6 10.5 protein-glutamate O-methyltransferase CheR compare
PFLU_RS21845 +1.6 13.1 flagellar basal body P-ring protein FlgI compare
PFLU_RS21755 +1.6 11.9 flagella biosynthesis chaperone FliJ compare
PFLU_RS21705 +1.6 11.1 flagellar biosynthesis protein FliQ compare
PFLU_RS23325 +1.6 12.9 GlxA family transcriptional regulator compare
PFLU_RS23165 +1.5 14.1 flagellar hook protein FlgE compare
PFLU_RS21775 +1.5 12.7 flagellar basal body M-ring protein FliF compare
PFLU_RS02575 +1.5 9.3 GTPase HflX compare
PFLU_RS23180 +1.5 11.1 flagellar basal body rod protein FlgB compare
PFLU_RS17130 +1.5 6.5 protein BatD compare
PFLU_RS21700 +1.5 8.2 flagellar type III secretion system protein FliR compare
PFLU_RS21860 +1.5 9.9 flagellar basal body rod protein FlgF compare
PFLU_RS21725 +1.5 11.0 flagellar motor switch protein FliM compare
PFLU_RS21765 +1.5 9.6 flagellar assembly protein FliH compare
PFLU_RS21850 +1.5 12.5 flagellar basal body L-ring protein FlgH compare
PFLU_RS21735 +1.5 12.0 flagellar hook-length control protein FliK compare
PFLU_RS21770 +1.4 10.1 flagellar motor switch protein FliG compare
PFLU_RS21675 +1.4 12.4 flagellar biosynthesis protein FlhA compare
PFLU_RS21660 +1.4 12.3 RNA polymerase sigma factor FliA compare
PFLU_RS23195 +1.4 12.6 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS25200 +1.4 9.1 protoheme IX farnesyltransferase compare
PFLU_RS21760 +1.4 11.7 flagellar protein export ATPase FliI compare
PFLU_RS05720 +1.4 11.4 OmpA family protein compare
PFLU_RS23175 +1.3 9.0 flagellar basal body rod protein FlgC compare
PFLU_RS21840 +1.3 9.2 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS21730 +1.3 8.9 flagellar basal body-associated protein FliL compare
PFLU_RS23205 +1.2 9.7 flagellar protein FlgN compare
PFLU_RS00440 +1.2 8.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01875 +1.2 2.6 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS25205 +1.2 5.6 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS21835 +1.2 10.5 flagellar hook-associated protein FlgK compare
PFLU_RS02510 +1.2 9.9 flagellar motor stator protein MotA compare
PFLU_RS21810 +1.1 10.6 flagellar filament capping protein FliD compare
PFLU_RS24690 +1.1 9.4 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS21830 +1.1 10.4 flagellar hook-associated protein 3 compare
PFLU_RS21925 +1.1 4.3 YecA family protein compare
PFLU_RS17105 +1.1 6.4 MoxR family ATPase compare
PFLU_RS17895 +1.1 5.4 glycosyltransferase family 2 protein compare
PFLU_RS12915 +1.1 2.7 methyltransferase domain-containing protein compare
PFLU_RS10300 +1.1 9.3 transaldolase compare
PFLU_RS29815 +1.1 5.6 aspartate ammonia-lyase compare
PFLU_RS17110 +1.1 5.5 DUF58 domain-containing protein compare
PFLU_RS29780 +1.1 6.9 acyl-CoA thioesterase compare
PFLU_RS29400 +1.1 2.1 DUF1127 domain-containing protein compare
PFLU_RS17125 +1.1 7.2 VWA domain-containing protein compare
PFLU_RS10295 +1.0 4.7 HAD-IA family hydrolase compare
PFLU_RS31290 +1.0 1.4 EamA family transporter compare
PFLU_RS12260 +1.0 1.3 hypothetical protein compare
PFLU_RS23345 +1.0 8.3 ABC transporter permease compare
PFLU_RS21790 +1.0 6.8 PAS domain-containing protein compare
PFLU_RS26955 +1.0 8.3 sugar nucleotide-binding protein compare
PFLU_RS21610 +1.0 6.1 DUF2802 domain-containing protein compare
PFLU_RS23315 +1.0 5.5 aspartate aminotransferase family protein compare
PFLU_RS18885 +1.0 1.7 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS08600 +1.0 3.8 glutaredoxin family protein compare
PFLU_RS05690 +1.0 1.8 Grx4 family monothiol glutaredoxin compare
PFLU_RS23350 +1.0 7.3 ABC transporter substrate-binding protein compare
PFLU_RS24905 +1.0 7.9 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
PFLU_RS02515 +0.9 5.1 flagellar motor protein MotB compare
PFLU_RS06630 +0.9 3.9 ABC transporter ATP-binding protein compare
PFLU_RS17120 +0.9 5.7 VWA domain-containing protein compare
PFLU_RS26145 +0.9 2.1 hypothetical protein compare
PFLU_RS07235 +0.9 2.7 sigma factor AlgU negative regulatory protein compare
PFLU_RS13715 +0.9 1.5 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS08375 +0.9 7.9 N-acetyltransferase compare
PFLU_RS25215 +0.9 6.4 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS20970 +0.9 1.6 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS23170 +0.9 5.0 flagellar hook assembly protein FlgD compare
PFLU_RS31075 +0.9 4.7 hypothetical protein compare
PFLU_RS21820 +0.9 6.6 flagellin compare
PFLU_RS00455 +0.8 2.9 hypothetical protein compare
PFLU_RS21805 +0.8 6.6 flagellar export chaperone FliS compare
PFLU_RS28910 +0.8 5.7 glycine cleavage system protein GcvH compare
PFLU_RS01880 +0.8 6.1 twin-arginine translocase subunit TatC compare
PFLU_RS07630 +0.8 7.3 transglycosylase SLT domain-containing protein compare
PFLU_RS24040 +0.8 6.6 7-cyano-7-deazaguanine synthase QueC compare
PFLU_RS23100 +0.8 3.0 ribonuclease E compare
PFLU_RS02045 +0.8 7.8 glutamate synthase large subunit compare
PFLU_RS15830 +0.8 1.5 His-Xaa-Ser system protein HxsD compare
PFLU_RS04485 +0.8 6.6 uracil phosphoribosyltransferase compare
PFLU_RS21785 +0.8 6.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28905 +0.8 6.7 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS31510 +0.8 1.3 transcriptional regulator compare
PFLU_RS14690 +0.8 3.4 hypothetical protein compare
PFLU_RS21485 +0.8 3.4 response regulator compare
PFLU_RS31830 +0.8 1.8 hypothetical protein compare
PFLU_RS13765 +0.8 1.6 hypothetical protein compare
PFLU_RS10320 +0.8 4.9 class I SAM-dependent methyltransferase compare
PFLU_RS23340 +0.8 6.9 ABC transporter permease compare
PFLU_RS17115 +0.8 5.4 DUF4381 domain-containing protein compare
PFLU_RS09675 +0.8 3.8 hypothetical protein compare
PFLU_RS05660 +0.8 6.1 glycerol kinase GlpK compare
PFLU_RS01850 +0.8 5.2 transporter substrate-binding domain-containing protein compare
PFLU_RS18000 +0.8 1.0 AhpC/TSA family protein compare
PFLU_RS22535 +0.8 6.9 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS25220 +0.8 4.7 ubiquinol oxidase subunit II compare
PFLU_RS30790 +0.8 1.1 hypothetical protein compare
PFLU_RS11470 +0.8 2.3 hypothetical protein compare
PFLU_RS07770 +0.8 5.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
PFLU_RS15895 +0.8 3.4 MFS transporter compare
PFLU_RS29705 +0.8 4.3 rubredoxin compare
PFLU_RS01860 +0.8 1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS03075 +0.8 1.3 translation initiation factor Sui1 compare
PFLU_RS02350 +0.8 5.6 carbamoyltransferase compare
PFLU_RS25210 +0.8 3.6 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS00195 +0.8 1.7 dodecin domain-containing protein compare
PFLU_RS27975 +0.7 4.3 choline ABC transporter ATP-binding protein compare
PFLU_RS04175 +0.7 5.3 acyl-CoA dehydrogenase compare
PFLU_RS00155 +0.7 5.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS13670 +0.7 2.5 (2Fe-2S)-binding protein compare
PFLU_RS29065 +0.7 1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS17095 +0.7 6.5 NAD-glutamate dehydrogenase compare
PFLU_RS01500 +0.7 2.0 cell division protein FtsQ compare
PFLU_RS21615 +0.7 4.6 chemotaxis protein CheW compare
PFLU_RS04155 +0.7 4.0 alpha/beta fold hydrolase compare
PFLU_RS23330 +0.7 3.3 ATP-binding cassette domain-containing protein compare
PFLU_RS03245 +0.7 5.0 hypothetical protein compare
PFLU_RS01540 +0.7 6.0 ABC transporter ATP-binding protein compare
PFLU_RS04075 +0.7 1.1 hypothetical protein compare
PFLU_RS08105 +0.7 4.5 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS11415 +0.7 1.4 protein glxC compare
PFLU_RS02580 +0.7 3.9 FtsH protease activity modulator HflK compare
PFLU_RS01885 +0.7 3.9 Sec-independent protein translocase subunit TatB compare
PFLU_RS21910 +0.7 6.1 BamA/TamA family outer membrane protein compare
PFLU_RS07045 +0.7 2.8 addiction module toxin, HicA family compare
PFLU_RS20330 +0.7 2.1 cold-shock protein compare
PFLU_RS04200 +0.7 5.9 cytochrome bc complex cytochrome b subunit compare
PFLU_RS17815 +0.7 1.4 response regulator compare
PFLU_RS25040 +0.7 2.3 DUF3077 domain-containing protein compare
PFLU_RS28315 +0.7 0.6 response regulator compare
PFLU_RS22520 +0.6 1.8 GntR family transcriptional regulator compare
PFLU_RS12380 +0.6 3.2 GntR family transcriptional regulator compare
PFLU_RS23260 +0.6 3.1 carbon storage regulator CsrA compare
PFLU_RS01855 +0.6 4.8 amino acid ABC transporter permease compare
PFLU_RS19830 +0.6 2.6 type VI secretion system tube protein Hcp compare
PFLU_RS21670 +0.6 3.9 flagellar biosynthesis protein FlhF compare
PFLU_RS23005 +0.6 4.8 DUF4823 domain-containing protein compare
PFLU_RS20545 +0.6 4.3 tRNA pseudouridine(38-40) synthase TruA compare
PFLU_RS23590 +0.6 1.0 gluconokinase compare
PFLU_RS16495 +0.6 2.6 LysR family transcriptional regulator compare
PFLU_RS30485 +0.6 2.0 hypothetical protein compare
PFLU_RS20550 +0.6 5.5 FimV family protein compare
PFLU_RS19805 +0.6 2.1 LysR family transcriptional regulator compare
PFLU_RS27580 +0.6 1.8 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS23095 +0.6 3.6 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
PFLU_RS10315 +0.6 3.7 hypothetical protein compare
PFLU_RS15915 +0.6 2.5 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
PFLU_RS14995 +0.6 1.0 response regulator transcription factor compare
PFLU_RS13010 +0.6 2.3 Fe-S biogenesis protein NfuA compare
PFLU_RS27640 +0.6 1.8 alpha/beta fold hydrolase compare
PFLU_RS11225 +0.6 2.2 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare
PFLU_RS10305 +0.6 3.7 sulfotransferase family protein compare
PFLU_RS13205 +0.6 1.9 DUF883 family protein compare
PFLU_RS10595 +0.6 1.5 hypothetical protein compare
PFLU_RS26500 +0.6 3.2 Lrp/AsnC family transcriptional regulator compare
PFLU_RS01660 +0.6 1.5 rhodanese-like domain-containing protein compare
PFLU_RS09480 +0.6 1.6 hypothetical protein compare
PFLU_RS29310 +0.6 0.8 accessory factor UbiK family protein compare
PFLU_RS24305 +0.6 1.8 antibiotic biosynthesis monooxygenase compare
PFLU_RS22250 +0.6 1.6 hypothetical protein compare
PFLU_RS17855 +0.6 1.5 YjbF family lipoprotein compare
PFLU_RS05620 +0.6 2.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS11705 +0.6 2.1 TIM barrel protein compare
PFLU_RS03585 +0.6 1.3 hypothetical protein compare
PFLU_RS22215 +0.6 2.7 3-phosphoglycerate kinase compare
PFLU_RS09495 +0.6 1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS00695 +0.6 1.0 DUF2789 domain-containing protein compare
PFLU_RS08980 +0.6 4.7 branched-chain amino acid transport system II carrier protein compare
PFLU_RS28470 +0.6 2.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS20395 +0.5 4.0 deoxyribonuclease compare
PFLU_RS13915 +0.5 3.1 hypothetical protein compare
PFLU_RS14430 +0.5 1.4 arsenate reductase ArsC compare
PFLU_RS29385 +0.5 4.9 AsnC family transcriptional regulator compare
PFLU_RS01480 +0.5 5.0 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
PFLU_RS01475 +0.5 4.9 UDP-forming cellulose synthase catalytic subunit compare
PFLU_RS31010 +0.5 1.2 transposase compare
PFLU_RS01495 +0.5 3.4 SGNH/GDSL hydrolase family protein compare
PFLU_RS16945 +0.5 2.2 MmgE/PrpD family protein compare
PFLU_RS21960 +0.5 3.8 hypothetical protein compare
PFLU_RS02585 +0.5 2.1 protease modulator HflC compare
PFLU_RS20095 +0.5 2.4 glyoxalase compare
PFLU_RS04205 +0.5 4.2 cytochrome c1 compare
PFLU_RS27695 +0.5 4.1 CBS domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source 4-Acetoxy-3-methoxycinnamic acid in Pseudomonas fluorescens SBW25-INTG

For carbon source 4-Acetoxy-3-methoxycinnamic acid across organisms