Experiment set27S469 for Pseudomonas fluorescens SBW25-INTG

Compare to:

4-Acetoxy-3-methoxycinnamic acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS06735 -4.0 -9.3 3-oxoadipyl-CoA thiolase compare
PFLU_RS03240 -4.0 -17.0 copper-translocating P-type ATPase compare
PFLU_RS16045 -3.9 -7.0 aromatic ring-hydroxylating dioxygenase subunit alpha conserved
PFLU_RS04465 -3.9 -10.7 ATP phosphoribosyltransferase compare
PFLU_RS23355 -3.9 -29.4 acetate--CoA ligase compare
PFLU_RS07650 -3.8 -14.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS06755 -3.8 -11.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS28390 -3.8 -12.4 methionine biosynthesis protein MetW compare
PFLU_RS06725 -3.6 -10.9 CoA transferase subunit A compare
PFLU_RS20510 -3.6 -14.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS02365 -3.6 -11.1 glycosyltransferase compare
PFLU_RS02490 -3.5 -15.7 phosphoserine phosphatase SerB compare
PFLU_RS21300 -3.5 -4.2 cysteine hydrolase compare
PFLU_RS28535 -3.5 -17.6 dihydroxy-acid dehydratase compare
PFLU_RS16050 -3.5 -7.9 oxidoreductase conserved
PFLU_RS25640 -3.4 -14.7 ketol-acid reductoisomerase compare
PFLU_RS06740 -3.4 -12.9 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS06745 -3.4 -6.4 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS23920 -3.3 -3.2 septation protein A compare
PFLU_RS24765 -3.3 -22.5 2-isopropylmalate synthase compare
PFLU_RS20540 -3.3 -12.0 phosphoribosylanthranilate isomerase compare
PFLU_RS25360 -3.3 -9.6 glutamate 5-kinase compare
PFLU_RS20565 -3.3 -15.9 3-isopropylmalate dehydrogenase compare
PFLU_RS20575 -3.3 -7.4 3-isopropylmalate dehydratase small subunit compare
PFLU_RS06715 -3.2 -12.3 IclR family transcriptional regulator compare
PFLU_RS00180 -3.2 -8.0 tryptophan synthase subunit beta compare
PFLU_RS27370 -3.2 -14.7 anthranilate phosphoribosyltransferase compare
PFLU_RS08505 -3.2 -7.9 protease HtpX compare
PFLU_RS26020 -3.2 -13.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS20580 -3.2 -13.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS01605 -3.2 -8.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27685 -3.2 -17.1 malate synthase G compare
PFLU_RS29095 -3.1 -23.5 polyphosphate kinase 1 compare
PFLU_RS28165 -3.1 -13.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS12975 -3.1 -5.5 DUF934 domain-containing protein compare
PFLU_RS04470 -3.1 -11.5 histidinol dehydrogenase compare
PFLU_RS16080 -3.1 -11.8 p-hydroxycinnamoyl CoA hydratase/lyase compare
PFLU_RS29880 -3.1 -16.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS28385 -3.1 -15.3 homoserine O-acetyltransferase compare
PFLU_RS22095 -3.1 -19.2 GTP diphosphokinase compare
PFLU_RS06730 -3.1 -12.7 CoA-transferase subunit beta compare
PFLU_RS27365 -3.0 -11.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS25715 -3.0 -8.1 RNA polymerase-binding protein DksA compare
PFLU_RS06055 -3.0 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS06760 -3.0 -13.0 3-oxoadipate enol-lactonase compare
PFLU_RS25645 -3.0 -2.1 acetolactate synthase small subunit compare
PFLU_RS02370 -3.0 -10.9 glycosyltransferase compare
PFLU_RS16070 -3.0 -10.3 feruloyl-CoA synthase compare
PFLU_RS22835 -3.0 -9.3 amidotransferase compare
PFLU_RS16090 -2.9 -14.6 OprD family porin compare
PFLU_RS12980 -2.9 -9.4 nitrite/sulfite reductase compare
PFLU_RS27690 -2.9 -3.3 response regulator compare
PFLU_RS29875 -2.9 -17.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS02590 -2.9 -10.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS19170 -2.8 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS04930 -2.8 -14.2 PhoH family protein compare
PFLU_RS01610 -2.8 -11.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28645 -2.8 -14.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29885 -2.8 -11.9 LysR family transcriptional regulator compare
PFLU_RS01900 -2.8 -7.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS21060 -2.8 -5.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS06815 -2.8 -9.0 TetR family transcriptional regulator compare
PFLU_RS25750 -2.8 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS21935 -2.8 -17.6 sensor histidine kinase compare
PFLU_RS29760 -2.8 -10.3 phosphate ABC transporter permease PstA compare
PFLU_RS01620 -2.7 -9.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS24785 -2.7 -9.8 outer membrane protein assembly factor BamB compare
PFLU_RS06765 -2.7 -7.1 4-carboxymuconolactone decarboxylase compare
PFLU_RS18505 -2.7 -9.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS29490 -2.6 -8.1 ribonuclease PH compare
PFLU_RS06130 -2.6 -12.9 phosphoenolpyruvate carboxylase compare
PFLU_RS28695 -2.6 -9.6 phosphoglycerate dehydrogenase compare
PFLU_RS28655 -2.5 -13.3 HAD family hydrolase compare
PFLU_RS00175 -2.5 -8.3 tryptophan synthase subunit alpha compare
PFLU_RS24790 -2.5 -5.5 tetratricopeptide repeat protein compare
PFLU_RS18530 -2.5 -4.1 DNA translocase FtsK compare
PFLU_RS23680 -2.5 -16.7 long-chain fatty acid--CoA ligase compare
PFLU_RS07765 -2.4 -9.8 cupredoxin family protein compare
PFLU_RS23305 -2.4 -10.9 arginine N-succinyltransferase compare
PFLU_RS16075 -2.4 -5.2 aldehyde dehydrogenase compare
PFLU_RS14550 -2.4 -8.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS30345 -2.4 -2.9 DUF2559 family protein compare
PFLU_RS20515 -2.4 -4.2 amidophosphoribosyltransferase compare
PFLU_RS27475 -2.3 -2.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS29290 -2.3 -4.5 hypothetical protein compare
PFLU_RS08165 -2.3 -3.0 acyl carrier protein compare
PFLU_RS23310 -2.3 -8.9 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS21965 -2.2 -15.0 transporter compare
PFLU_RS01320 -2.2 -9.5 phosphoenolpyruvate carboxykinase compare
PFLU_RS08410 -2.2 -9.7 HTH-type transcriptional regulator CysB compare
PFLU_RS19175 -2.2 -7.0 trigger factor compare
PFLU_RS23240 -2.2 -8.8 magnesium transporter compare
PFLU_RS27440 -2.2 -6.7 nucleotidyltransferase family protein compare
PFLU_RS07695 -2.2 -4.2 beta-N-acetylhexosaminidase compare
PFLU_RS25800 -2.2 -5.8 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS23430 -2.2 -7.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS03970 -2.2 -9.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS04150 -2.1 -7.4 DUF1043 family protein compare
PFLU_RS15410 -2.1 -2.4 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS24825 -2.1 -3.1 Fe-S cluster assembly protein IscX compare
PFLU_RS23380 -2.1 -2.0 HAD-IB family hydrolase compare
PFLU_RS28650 -2.0 -6.0 RNA pyrophosphohydrolase compare
PFLU_RS26905 -2.0 -9.9 transcriptional regulator NrdR compare
PFLU_RS23065 -2.0 -9.8 phosphate acyltransferase PlsX compare
PFLU_RS07645 -2.0 -3.9 hypothetical protein compare
PFLU_RS18670 -2.0 -1.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS24085 -2.0 -3.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS09055 -2.0 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS24090 -1.9 -2.6 Holliday junction branch migration protein RuvA compare
PFLU_RS27445 -1.9 -13.6 phosphotransferase compare
PFLU_RS18585 -1.9 -2.7 high frequency lysogenization protein HflD compare
PFLU_RS18910 -1.9 -4.8 MarR family transcriptional regulator compare
PFLU_RS04660 -1.9 -5.9 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS18410 -1.9 -4.9 response regulator compare
PFLU_RS22895 -1.8 -14.7 PLP-dependent aminotransferase family protein compare
PFLU_RS25225 -1.8 -6.5 disulfide bond formation protein B compare
PFLU_RS22075 -1.8 -10.5 DUF3108 domain-containing protein compare
PFLU_RS22105 -1.8 -3.8 cysteine synthase CysM compare
PFLU_RS18665 -1.8 -3.4 NADH-quinone oxidoreductase subunit L compare
PFLU_RS29735 -1.8 -9.1 HlyC/CorC family transporter compare
PFLU_RS24095 -1.8 -2.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS27620 -1.8 -13.5 acyl-CoA dehydrogenase compare
PFLU_RS25815 -1.8 -2.4 transcription termination/antitermination protein NusA compare
PFLU_RS24025 -1.8 -10.5 quinolinate synthase NadA compare
PFLU_RS19165 -1.8 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS18635 -1.7 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS26545 -1.7 -7.5 sel1 repeat family protein compare
PFLU_RS01955 -1.7 -6.9 DUF971 domain-containing protein compare
PFLU_RS16095 -1.7 -9.3 3-(3-hydroxy-phenyl)propionate transporter MhpT conserved
PFLU_RS07665 -1.7 -3.1 type I DNA topoisomerase compare
PFLU_RS01625 -1.7 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS26635 -1.7 -4.0 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS00415 -1.7 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS27305 -1.7 -8.1 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS07970 -1.7 -11.2 LOG family protein compare
PFLU_RS06395 -1.7 -8.7 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
PFLU_RS01965 -1.7 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS25730 -1.7 -8.8 PAS domain S-box protein compare
PFLU_RS07810 -1.7 -11.2 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS07685 -1.7 -4.1 transcriptional repressor LexA compare
PFLU_RS22740 -1.7 -4.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS04220 -1.6 -7.1 FadR family transcriptional regulator compare
PFLU_RS07640 -1.6 -9.4 universal stress protein compare
PFLU_RS29550 -1.6 -7.2 ATP-dependent DNA helicase RecG compare
PFLU_RS04715 -1.6 -5.6 D-alanine--D-alanine ligase compare
PFLU_RS26770 -1.6 -9.8 DedA family protein compare
PFLU_RS18610 -1.6 -10.3 isocitrate lyase compare
PFLU_RS26640 -1.6 -6.5 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS02355 -1.6 -7.3 GNAT family N-acetyltransferase compare
PFLU_RS08065 -1.6 -6.7 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS04385 -1.6 -7.8 RNase adapter RapZ compare
PFLU_RS14820 -1.6 -4.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS24590 -1.6 -4.1 cytochrome c assembly protein compare
PFLU_RS26735 -1.6 -5.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS28965 -1.5 -8.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS04325 -1.5 -10.4 ribonuclease G compare
PFLU_RS09980 -1.5 -11.3 peptidase S41 compare
PFLU_RS07245 -1.5 -7.0 DegQ family serine endoprotease compare
PFLU_RS20625 -1.5 -2.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS28325 -1.5 -4.7 energy transducer TonB compare
PFLU_RS04330 -1.5 -11.0 TIGR02099 family protein compare
PFLU_RS21360 -1.5 -2.3 MarR family transcriptional regulator compare
PFLU_RS04315 -1.5 -3.2 rod shape-determining protein MreD compare
PFLU_RS01910 -1.4 -1.6 sterol-binding protein compare
PFLU_RS04430 -1.4 -5.5 ATP-binding cassette domain-containing protein compare
PFLU_RS29215 -1.4 -8.5 response regulator transcription factor compare
PFLU_RS03665 -1.4 -4.7 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS21215 -1.4 -1.8 YheU family protein compare
PFLU_RS27265 -1.3 -3.2 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS01995 -1.3 -8.4 malate dehydrogenase compare
PFLU_RS21665 -1.3 -4.1 MinD/ParA family protein compare
PFLU_RS10765 -1.3 -7.3 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS14805 -1.3 -2.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS05210 -1.3 -2.7 HU family DNA-binding protein compare
PFLU_RS23730 -1.3 -8.9 MurR/RpiR family transcriptional regulator compare
PFLU_RS22605 -1.3 -5.7 mechanosensitive ion channel compare
PFLU_RS28725 -1.3 -7.4 DUF2059 domain-containing protein compare
PFLU_RS03765 -1.3 -7.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS25735 -1.3 -1.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24125 -1.3 -2.0 cold-shock protein compare
PFLU_RS22045 -1.2 -6.4 peptidase P60 compare
PFLU_RS03235 -1.2 -5.0 Cu(I)-responsive transcriptional regulator compare
PFLU_RS30165 -1.2 -6.3 ParA family protein compare
PFLU_RS07280 -1.2 -7.9 outer membrane protein assembly factor BamC compare
PFLU_RS19160 -1.2 -7.0 endopeptidase La compare
PFLU_RS25755 -1.2 -0.8 pantoate--beta-alanine ligase compare
PFLU_RS12580 -1.2 -6.1 MurR/RpiR family transcriptional regulator compare
PFLU_RS17060 -1.2 -1.7 monooxygenase compare
PFLU_RS03770 -1.2 -7.7 sulfate adenylyltransferase subunit CysN compare
PFLU_RS04435 -1.2 -4.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS11525 -1.2 -3.3 GntR family transcriptional regulator compare
PFLU_RS20290 -1.2 -1.7 integration host factor subunit alpha compare
PFLU_RS13540 -1.2 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04945 -1.2 -2.4 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS04650 -1.2 -8.9 ABC transporter substrate-binding protein compare
PFLU_RS21825 -1.1 -8.0 ketoacyl-ACP synthase III compare
PFLU_RS30865 -1.1 -3.2 transposase compare
PFLU_RS29900 -1.1 -7.4 DNA helicase II compare
PFLU_RS03435 -1.1 -6.7 MFS transporter compare
PFLU_RS24805 -1.1 -3.1 helix-turn-helix domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source 4-Acetoxy-3-methoxycinnamic acid in Pseudomonas fluorescens SBW25-INTG

For carbon source 4-Acetoxy-3-methoxycinnamic acid across organisms