Experiment set27S465 for Pseudomonas fluorescens SBW25-INTG

Compare to:

p-Coumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS06725 -4.7 -8.5 CoA transferase subunit A compare
PFLU_RS16080 -4.6 -9.3 p-hydroxycinnamoyl CoA hydratase/lyase compare
PFLU_RS06745 -4.5 -5.3 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS06755 -4.4 -10.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS16070 -4.4 -8.8 feruloyl-CoA synthase compare
PFLU_RS28535 -4.3 -16.2 dihydroxy-acid dehydratase compare
PFLU_RS16075 -4.3 -5.1 aldehyde dehydrogenase compare
PFLU_RS27365 -4.3 -11.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS04465 -4.2 -10.5 ATP phosphoribosyltransferase compare
PFLU_RS03240 -4.1 -17.2 copper-translocating P-type ATPase compare
PFLU_RS06760 -4.1 -12.4 3-oxoadipate enol-lactonase compare
PFLU_RS07650 -4.1 -15.1 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS20510 -4.1 -14.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS02490 -4.1 -15.7 phosphoserine phosphatase SerB compare
PFLU_RS20565 -4.0 -15.6 3-isopropylmalate dehydrogenase compare
PFLU_RS12975 -4.0 -4.8 DUF934 domain-containing protein compare
PFLU_RS06730 -4.0 -13.1 CoA-transferase subunit beta compare
PFLU_RS06735 -4.0 -9.0 3-oxoadipyl-CoA thiolase compare
PFLU_RS20575 -4.0 -7.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS03970 -4.0 -12.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25640 -4.0 -14.4 ketol-acid reductoisomerase compare
PFLU_RS20540 -4.0 -11.1 phosphoribosylanthranilate isomerase compare
PFLU_RS28645 -4.0 -19.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS23680 -3.9 -19.4 long-chain fatty acid--CoA ligase compare
PFLU_RS29880 -3.9 -18.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS29875 -3.9 -20.8 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS21965 -3.8 -18.7 transporter compare
PFLU_RS12980 -3.8 -8.3 nitrite/sulfite reductase compare
PFLU_RS06740 -3.7 -13.0 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS07430 -3.7 -14.9 helix-turn-helix domain-containing protein compare
PFLU_RS02590 -3.7 -10.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25360 -3.7 -9.2 glutamate 5-kinase compare
PFLU_RS24765 -3.7 -23.5 2-isopropylmalate synthase compare
PFLU_RS01900 -3.7 -6.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20580 -3.7 -14.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27620 -3.6 -22.7 acyl-CoA dehydrogenase compare
PFLU_RS23310 -3.6 -6.9 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS27370 -3.6 -15.0 anthranilate phosphoribosyltransferase compare
PFLU_RS28390 -3.6 -12.7 methionine biosynthesis protein MetW compare
PFLU_RS07435 -3.5 -15.2 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS29885 -3.5 -15.7 LysR family transcriptional regulator compare
PFLU_RS28165 -3.4 -12.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS28385 -3.4 -15.6 homoserine O-acetyltransferase compare
PFLU_RS08505 -3.3 -7.7 protease HtpX compare
PFLU_RS00175 -3.3 -7.7 tryptophan synthase subunit alpha compare
PFLU_RS28695 -3.3 -9.7 phosphoglycerate dehydrogenase compare
PFLU_RS00180 -3.3 -8.1 tryptophan synthase subunit beta compare
PFLU_RS01895 -3.2 -7.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS19170 -3.2 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS18505 -3.2 -7.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS07655 -3.2 -7.5 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS06765 -3.2 -7.5 4-carboxymuconolactone decarboxylase compare
PFLU_RS22095 -3.2 -20.5 GTP diphosphokinase compare
PFLU_RS24025 -3.2 -13.8 quinolinate synthase NadA compare
PFLU_RS01620 -3.2 -8.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25715 -3.2 -8.1 RNA polymerase-binding protein DksA compare
PFLU_RS29515 -3.1 -14.0 RidA family protein compare
PFLU_RS01605 -3.1 -8.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS04470 -3.1 -12.6 histidinol dehydrogenase compare
PFLU_RS06715 -3.1 -13.2 IclR family transcriptional regulator compare
PFLU_RS01610 -3.0 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28655 -3.0 -13.5 HAD family hydrolase compare
PFLU_RS29095 -3.0 -23.9 polyphosphate kinase 1 compare
PFLU_RS23305 -3.0 -11.5 arginine N-succinyltransferase compare
PFLU_RS29760 -2.9 -9.9 phosphate ABC transporter permease PstA compare
PFLU_RS07695 -2.8 -4.9 beta-N-acetylhexosaminidase compare
PFLU_RS18410 -2.8 -7.4 response regulator compare
PFLU_RS29735 -2.8 -13.4 HlyC/CorC family transporter compare
PFLU_RS01625 -2.7 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS06815 -2.7 -9.1 TetR family transcriptional regulator compare
PFLU_RS19175 -2.7 -7.5 trigger factor compare
PFLU_RS25750 -2.7 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS07640 -2.7 -12.5 universal stress protein compare
PFLU_RS04385 -2.6 -10.3 RNase adapter RapZ compare
PFLU_RS04930 -2.6 -14.6 PhoH family protein compare
PFLU_RS26020 -2.6 -13.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS25800 -2.6 -5.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS29490 -2.6 -8.4 ribonuclease PH compare
PFLU_RS21300 -2.5 -4.9 cysteine hydrolase compare
PFLU_RS22725 -2.5 -3.9 transcriptional regulator compare
PFLU_RS15410 -2.5 -2.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS20515 -2.4 -4.6 amidophosphoribosyltransferase compare
PFLU_RS07225 -2.4 -16.4 L-aspartate oxidase compare
PFLU_RS26565 -2.4 -2.9 rRNA maturation RNase YbeY compare
PFLU_RS22070 -2.4 -2.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS18530 -2.4 -4.8 DNA translocase FtsK compare
PFLU_RS09055 -2.3 -2.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS19165 -2.2 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS25645 -2.2 -2.9 acetolactate synthase small subunit compare
PFLU_RS08410 -2.1 -8.8 HTH-type transcriptional regulator CysB compare
PFLU_RS13540 -2.1 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS28310 -2.1 -2.0 response regulator compare
PFLU_RS07665 -2.1 -3.3 type I DNA topoisomerase compare
PFLU_RS18675 -2.1 -3.4 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS26570 -2.1 -6.8 HlyC/CorC family transporter compare
PFLU_RS23920 -2.0 -2.8 septation protein A compare
PFLU_RS18665 -2.0 -3.4 NADH-quinone oxidoreductase subunit L compare
PFLU_RS29750 -2.0 -6.5 phosphate signaling complex protein PhoU compare
PFLU_RS01320 -2.0 -9.3 phosphoenolpyruvate carboxykinase compare
PFLU_RS29290 -2.0 -4.4 hypothetical protein compare
PFLU_RS18635 -1.9 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS01995 -1.9 -10.4 malate dehydrogenase compare
PFLU_RS24090 -1.9 -2.9 Holliday junction branch migration protein RuvA compare
PFLU_RS22735 -1.9 -10.5 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS30345 -1.9 -2.8 DUF2559 family protein compare
PFLU_RS19375 -1.9 -10.5 branched-chain amino acid aminotransferase compare
PFLU_RS27305 -1.9 -10.0 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS22835 -1.9 -9.1 amidotransferase compare
PFLU_RS27340 -1.9 -9.1 histidine triad nucleotide-binding protein compare
PFLU_RS10765 -1.8 -8.0 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS22630 -1.8 -13.7 phosphoenolpyruvate synthase compare
PFLU_RS06130 -1.8 -10.1 phosphoenolpyruvate carboxylase compare
PFLU_RS23240 -1.8 -8.6 magnesium transporter compare
PFLU_RS04220 -1.8 -7.8 FadR family transcriptional regulator compare
PFLU_RS27445 -1.8 -13.6 phosphotransferase compare
PFLU_RS28650 -1.8 -5.9 RNA pyrophosphohydrolase compare
PFLU_RS26635 -1.8 -4.2 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS01645 -1.8 -7.6 S41 family peptidase compare
PFLU_RS24085 -1.7 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS21060 -1.7 -4.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS03770 -1.7 -11.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS09980 -1.7 -12.7 peptidase S41 compare
PFLU_RS01965 -1.7 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS20660 -1.7 -10.4 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS07685 -1.7 -5.0 transcriptional repressor LexA compare
PFLU_RS27380 -1.6 -9.9 anthranilate synthase component I compare
PFLU_RS07910 -1.6 -2.8 type 1 fimbrial protein compare
PFLU_RS03765 -1.6 -9.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS02205 -1.6 -6.8 potassium/proton antiporter compare
PFLU_RS25730 -1.6 -9.1 PAS domain S-box protein compare
PFLU_RS22075 -1.6 -10.3 DUF3108 domain-containing protein compare
PFLU_RS06750 -1.6 -10.1 MFS transporter compare
PFLU_RS29770 -1.6 -9.5 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS27475 -1.6 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS27440 -1.6 -6.1 nucleotidyltransferase family protein compare
PFLU_RS24095 -1.5 -1.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS24790 -1.5 -4.9 tetratricopeptide repeat protein compare
PFLU_RS03645 -1.5 -6.6 tetratricopeptide repeat protein compare
PFLU_RS08065 -1.5 -6.9 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS21825 -1.5 -9.3 ketoacyl-ACP synthase III compare
PFLU_RS26905 -1.5 -8.6 transcriptional regulator NrdR compare
PFLU_RS04475 -1.5 -9.3 histidinol-phosphate transaminase compare
PFLU_RS20970 -1.5 -1.7 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS18670 -1.4 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS28965 -1.4 -7.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS31330 -1.4 -5.0 hypothetical protein compare
PFLU_RS26545 -1.4 -6.4 sel1 repeat family protein compare
PFLU_RS25735 -1.4 -1.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02670 -1.4 -4.2 hypothetical protein compare
PFLU_RS06055 -1.4 -1.0 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS07970 -1.4 -9.8 LOG family protein compare
PFLU_RS04715 -1.4 -4.9 D-alanine--D-alanine ligase compare
PFLU_RS26150 -1.4 -10.1 ATP-binding protein compare
PFLU_RS18940 -1.3 -7.7 acyl-CoA dehydrogenase compare
PFLU_RS21665 -1.3 -4.8 MinD/ParA family protein compare
PFLU_RS04650 -1.3 -10.0 ABC transporter substrate-binding protein compare
PFLU_RS05210 -1.3 -2.8 HU family DNA-binding protein compare
PFLU_RS18655 -1.3 -1.5 NADH-quinone oxidoreductase subunit J compare
PFLU_RS22895 -1.3 -11.1 PLP-dependent aminotransferase family protein compare
PFLU_RS01615 -1.3 -3.4 DUF2164 domain-containing protein compare
PFLU_RS00870 -1.3 -2.0 hypothetical protein compare
PFLU_RS19160 -1.3 -7.6 endopeptidase La compare
PFLU_RS01670 -1.3 -6.1 protein-export chaperone SecB compare
PFLU_RS27605 -1.3 -11.2 acyl-CoA dehydrogenase compare
PFLU_RS23430 -1.3 -4.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS04505 -1.3 -4.0 hypothetical protein compare
PFLU_RS13050 -1.2 -4.4 VWA domain-containing protein compare
PFLU_RS29755 -1.2 -8.3 phosphate ABC transporter ATP-binding protein compare
PFLU_RS18625 -1.2 -4.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS07810 -1.2 -9.1 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS01765 -1.2 -6.3 histidine utilization repressor compare
PFLU_RS24785 -1.2 -6.6 outer membrane protein assembly factor BamB compare
PFLU_RS31800 -1.2 -1.7 hypothetical protein compare
PFLU_RS29900 -1.2 -7.4 DNA helicase II compare
PFLU_RS00190 -1.2 -2.1 DUF883 domain-containing protein compare
PFLU_RS07645 -1.2 -3.5 hypothetical protein compare
PFLU_RS25755 -1.2 -1.1 pantoate--beta-alanine ligase compare
PFLU_RS24100 -1.2 -7.4 YebC/PmpR family DNA-binding transcriptional regulator compare
PFLU_RS12660 -1.2 -4.4 hypothetical protein compare
PFLU_RS04325 -1.1 -8.5 ribonuclease G compare
PFLU_RS29550 -1.1 -5.2 ATP-dependent DNA helicase RecG compare
PFLU_RS18615 -1.1 -1.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS12580 -1.1 -5.9 MurR/RpiR family transcriptional regulator compare
PFLU_RS27375 -1.1 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS22635 -1.1 -8.4 kinase/pyrophosphorylase compare
PFLU_RS28915 -1.1 -7.3 glycine cleavage system aminomethyltransferase GcvT compare
PFLU_RS20520 -1.1 -6.6 colicin V production protein CvpA compare
PFLU_RS24475 -1.1 -10.3 AmpG family muropeptide MFS transporter compare
PFLU_RS13085 -1.1 -2.5 DUF1315 family protein compare
PFLU_RS27630 -1.1 -4.5 dethiobiotin synthase compare
PFLU_RS22740 -1.1 -3.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS03235 -1.1 -4.6 Cu(I)-responsive transcriptional regulator compare
PFLU_RS18620 -1.1 -2.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS14545 -1.1 -1.8 hypothetical protein compare
PFLU_RS24590 -1.1 -2.6 cytochrome c assembly protein compare
PFLU_RS30165 -1.1 -5.7 ParA family protein compare
PFLU_RS07255 -1.1 -3.0 sulfurtransferase TusA family protein compare
PFLU_RS04210 -1.1 -6.2 stringent starvation protein A compare
PFLU_RS01955 -1.1 -5.3 DUF971 domain-containing protein compare
PFLU_RS28470 -1.1 -3.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source p-Coumaric acid in Pseudomonas fluorescens SBW25-INTG

For carbon source p-Coumaric acid across organisms