Experiment set27S463 for Pseudomonas fluorescens SBW25-INTG

Compare to:

p-Coumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS06735 -3.9 -8.7 3-oxoadipyl-CoA thiolase compare
PFLU_RS16080 -3.8 -11.1 p-hydroxycinnamoyl CoA hydratase/lyase compare
PFLU_RS16070 -3.6 -9.9 feruloyl-CoA synthase compare
PFLU_RS12975 -3.4 -5.5 DUF934 domain-containing protein compare
PFLU_RS20580 -3.3 -13.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS06755 -3.2 -10.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS16075 -3.2 -5.9 aldehyde dehydrogenase compare
PFLU_RS20540 -3.1 -11.3 phosphoribosylanthranilate isomerase compare
PFLU_RS06725 -3.1 -10.7 CoA transferase subunit A compare
PFLU_RS20510 -3.1 -14.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20565 -3.0 -15.3 3-isopropylmalate dehydrogenase compare
PFLU_RS04465 -3.0 -11.0 ATP phosphoribosyltransferase compare
PFLU_RS20575 -2.9 -7.4 3-isopropylmalate dehydratase small subunit compare
PFLU_RS06745 -2.9 -6.7 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS12980 -2.9 -8.8 nitrite/sulfite reductase compare
PFLU_RS03240 -2.9 -14.9 copper-translocating P-type ATPase compare
PFLU_RS25360 -2.9 -8.9 glutamate 5-kinase compare
PFLU_RS27365 -2.9 -11.2 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS19550 -2.9 -1.4 ABC transporter ATP-binding protein compare
PFLU_RS27370 -2.8 -13.9 anthranilate phosphoribosyltransferase compare
PFLU_RS07650 -2.8 -14.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS07430 -2.8 -14.4 helix-turn-helix domain-containing protein compare
PFLU_RS24765 -2.8 -20.3 2-isopropylmalate synthase compare
PFLU_RS25640 -2.8 -13.9 ketol-acid reductoisomerase compare
PFLU_RS03970 -2.8 -11.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS06740 -2.8 -11.8 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS01605 -2.8 -8.2 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01900 -2.8 -7.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS19375 -2.7 -12.8 branched-chain amino acid aminotransferase compare
PFLU_RS06760 -2.7 -12.5 3-oxoadipate enol-lactonase compare
PFLU_RS07435 -2.7 -13.7 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS02590 -2.7 -10.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28535 -2.7 -16.1 dihydroxy-acid dehydratase compare
PFLU_RS06730 -2.7 -11.7 CoA-transferase subunit beta compare
PFLU_RS18505 -2.7 -8.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS23310 -2.7 -9.0 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS02825 -2.7 -1.9 phosphate starvation-inducible protein PsiF compare
PFLU_RS21965 -2.7 -16.0 transporter compare
PFLU_RS07225 -2.7 -16.4 L-aspartate oxidase compare
PFLU_RS24025 -2.6 -12.7 quinolinate synthase NadA compare
PFLU_RS06715 -2.6 -11.3 IclR family transcriptional regulator compare
PFLU_RS23305 -2.6 -11.2 arginine N-succinyltransferase compare
PFLU_RS23680 -2.6 -16.6 long-chain fatty acid--CoA ligase compare
PFLU_RS28645 -2.6 -16.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29875 -2.6 -16.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01620 -2.6 -8.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28390 -2.6 -10.7 methionine biosynthesis protein MetW compare
PFLU_RS13035 -2.6 -4.1 cobalamin biosynthesis protein CobW compare
PFLU_RS19170 -2.6 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS04470 -2.6 -11.5 histidinol dehydrogenase compare
PFLU_RS01625 -2.6 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS25645 -2.6 -2.5 acetolactate synthase small subunit compare
PFLU_RS00175 -2.5 -7.7 tryptophan synthase subunit alpha compare
PFLU_RS02490 -2.5 -13.1 phosphoserine phosphatase SerB compare
PFLU_RS28655 -2.5 -12.3 HAD family hydrolase compare
PFLU_RS28165 -2.4 -12.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS00180 -2.4 -7.6 tryptophan synthase subunit beta compare
PFLU_RS29885 -2.4 -12.2 LysR family transcriptional regulator compare
PFLU_RS28695 -2.4 -8.7 phosphoglycerate dehydrogenase compare
PFLU_RS29515 -2.3 -12.3 RidA family protein compare
PFLU_RS22095 -2.3 -15.0 GTP diphosphokinase compare
PFLU_RS01610 -2.3 -10.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01895 -2.3 -7.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS06765 -2.3 -5.7 4-carboxymuconolactone decarboxylase compare
PFLU_RS22835 -2.3 -9.0 amidotransferase compare
PFLU_RS29880 -2.3 -14.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25750 -2.2 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS28385 -2.2 -12.6 homoserine O-acetyltransferase compare
PFLU_RS20515 -2.2 -4.2 amidophosphoribosyltransferase compare
PFLU_RS26570 -2.2 -7.0 HlyC/CorC family transporter compare
PFLU_RS07695 -2.2 -4.1 beta-N-acetylhexosaminidase compare
PFLU_RS30470 -2.2 -2.2 addiction module antidote protein compare
PFLU_RS25715 -2.2 -9.2 RNA polymerase-binding protein DksA compare
PFLU_RS28650 -2.2 -6.1 RNA pyrophosphohydrolase compare
PFLU_RS08505 -2.1 -7.8 protease HtpX compare
PFLU_RS04385 -2.1 -9.0 RNase adapter RapZ compare
PFLU_RS24090 -2.1 -2.1 Holliday junction branch migration protein RuvA compare
PFLU_RS18665 -2.1 -3.1 NADH-quinone oxidoreductase subunit L compare
PFLU_RS29735 -2.1 -10.9 HlyC/CorC family transporter compare
PFLU_RS22735 -2.1 -10.1 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS08410 -2.1 -9.6 HTH-type transcriptional regulator CysB compare
PFLU_RS13085 -2.1 -4.2 DUF1315 family protein compare
PFLU_RS21060 -2.0 -4.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS19165 -2.0 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS15410 -2.0 -2.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS10765 -2.0 -8.6 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS22075 -2.0 -10.2 DUF3108 domain-containing protein compare
PFLU_RS01995 -2.0 -10.2 malate dehydrogenase compare
PFLU_RS29095 -1.9 -16.5 polyphosphate kinase 1 compare
PFLU_RS24790 -1.9 -5.0 tetratricopeptide repeat protein compare
PFLU_RS09055 -1.9 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS11475 -1.9 -1.3 histidine kinase compare
PFLU_RS27620 -1.9 -13.5 acyl-CoA dehydrogenase compare
PFLU_RS07665 -1.9 -3.0 type I DNA topoisomerase compare
PFLU_RS18410 -1.9 -5.3 response regulator compare
PFLU_RS07640 -1.9 -9.2 universal stress protein compare
PFLU_RS25800 -1.8 -6.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS18655 -1.8 -1.2 NADH-quinone oxidoreductase subunit J compare
PFLU_RS26020 -1.8 -9.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS13540 -1.8 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS18635 -1.8 -2.0 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS27440 -1.8 -5.8 nucleotidyltransferase family protein compare
PFLU_RS29760 -1.8 -8.7 phosphate ABC transporter permease PstA compare
PFLU_RS18940 -1.7 -8.5 acyl-CoA dehydrogenase compare
PFLU_RS19175 -1.7 -6.6 trigger factor compare
PFLU_RS21300 -1.7 -4.5 cysteine hydrolase compare
PFLU_RS24095 -1.7 -1.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS24785 -1.7 -8.3 outer membrane protein assembly factor BamB compare
PFLU_RS30345 -1.7 -2.0 DUF2559 family protein compare
PFLU_RS14545 -1.7 -3.5 hypothetical protein compare
PFLU_RS06815 -1.7 -7.6 TetR family transcriptional regulator compare
PFLU_RS05875 -1.6 -2.4 lysozyme compare
PFLU_RS27305 -1.6 -8.7 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS24085 -1.6 -3.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS18670 -1.6 -1.5 NADH-quinone oxidoreductase subunit M compare
PFLU_RS01955 -1.6 -6.7 DUF971 domain-containing protein compare
PFLU_RS22630 -1.6 -12.1 phosphoenolpyruvate synthase compare
PFLU_RS04930 -1.6 -9.3 PhoH family protein compare
PFLU_RS29490 -1.6 -7.1 ribonuclease PH compare
PFLU_RS18725 -1.6 -1.5 alpha/beta hydrolase compare
PFLU_RS21215 -1.5 -1.1 YheU family protein compare
PFLU_RS03665 -1.5 -4.8 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS01965 -1.5 -1.0 ATP-dependent protease subunit HslV compare
PFLU_RS01645 -1.5 -6.9 S41 family peptidase compare
PFLU_RS20660 -1.5 -9.5 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS21985 -1.5 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS04475 -1.5 -9.5 histidinol-phosphate transaminase compare
PFLU_RS18530 -1.5 -4.0 DNA translocase FtsK compare
PFLU_RS01315 -1.5 -3.1 Hsp33 family molecular chaperone HslO compare
PFLU_RS02670 -1.5 -4.1 hypothetical protein compare
PFLU_RS25730 -1.5 -8.3 PAS domain S-box protein compare
PFLU_RS07765 -1.4 -6.2 cupredoxin family protein compare
PFLU_RS23240 -1.4 -7.6 magnesium transporter compare
PFLU_RS18735 -1.4 -1.1 hypothetical protein compare
PFLU_RS20625 -1.4 -2.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS27380 -1.4 -9.4 anthranilate synthase component I compare
PFLU_RS02990 -1.4 -5.0 precorrin-3B C(17)-methyltransferase compare
PFLU_RS18675 -1.4 -2.9 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS04220 -1.4 -6.3 FadR family transcriptional regulator compare
PFLU_RS26835 -1.4 -2.6 exodeoxyribonuclease VII small subunit compare
PFLU_RS18620 -1.4 -2.8 NADH-quinone oxidoreductase subunit B compare
PFLU_RS27340 -1.4 -6.9 histidine triad nucleotide-binding protein compare
PFLU_RS22395 -1.4 -4.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS13945 -1.4 -1.5 hypothetical protein compare
PFLU_RS00245 -1.4 -6.1 YheV family putative metal-binding protein compare
PFLU_RS02970 -1.4 -4.5 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS04945 -1.3 -2.0 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS07280 -1.3 -8.3 outer membrane protein assembly factor BamC compare
PFLU_RS29290 -1.3 -3.2 hypothetical protein compare
PFLU_RS09980 -1.3 -9.1 peptidase S41 compare
PFLU_RS07520 -1.3 -1.3 hypothetical protein compare
PFLU_RS26905 -1.3 -6.8 transcriptional regulator NrdR compare
PFLU_RS18625 -1.3 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS27635 -1.3 -7.0 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS26565 -1.3 -1.3 rRNA maturation RNase YbeY compare
PFLU_RS03995 -1.3 -1.1 hypothetical protein compare
PFLU_RS20955 -1.3 -1.4 DUF1028 domain-containing protein compare
PFLU_RS21665 -1.3 -4.3 MinD/ParA family protein compare
PFLU_RS06570 -1.3 -2.5 glycine zipper 2TM domain-containing protein compare
PFLU_RS27445 -1.3 -9.3 phosphotransferase compare
PFLU_RS22895 -1.3 -10.2 PLP-dependent aminotransferase family protein compare
PFLU_RS05935 -1.3 -2.7 DUF1456 family protein compare
PFLU_RS07810 -1.2 -8.9 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS06750 -1.2 -7.8 MFS transporter compare
PFLU_RS26505 -1.2 -2.4 DUF2788 domain-containing protein compare
PFLU_RS30730 -1.2 -2.4 helix-turn-helix domain-containing protein compare
PFLU_RS27645 -1.2 -8.8 8-amino-7-oxononanoate synthase compare
PFLU_RS30770 -1.2 -2.6 thioredoxin family protein compare
PFLU_RS26640 -1.2 -5.9 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS19160 -1.2 -7.1 endopeptidase La compare
PFLU_RS26545 -1.2 -5.2 sel1 repeat family protein compare
PFLU_RS21690 -1.2 -3.0 DNA-binding protein compare
PFLU_RS07655 -1.2 -3.8 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS12580 -1.2 -5.7 MurR/RpiR family transcriptional regulator compare
PFLU_RS18645 -1.2 -1.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS18600 -1.2 -3.0 GNAT family N-acetyltransferase compare
PFLU_RS29550 -1.2 -5.4 ATP-dependent DNA helicase RecG compare
PFLU_RS09500 -1.2 -1.1 hypothetical protein compare
PFLU_RS08990 -1.2 -1.9 hypothetical protein compare
PFLU_RS02975 -1.2 -4.9 precorrin-3B synthase compare
PFLU_RS21915 -1.2 -2.5 MarR family transcriptional regulator compare
PFLU_RS03235 -1.2 -3.2 Cu(I)-responsive transcriptional regulator compare
PFLU_RS30840 -1.2 -3.1 hypothetical protein compare
PFLU_RS04650 -1.2 -8.0 ABC transporter substrate-binding protein compare
PFLU_RS27650 -1.2 -8.5 biotin synthase BioB compare
PFLU_RS28965 -1.2 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS11525 -1.2 -3.3 GntR family transcriptional regulator compare
PFLU_RS26635 -1.1 -4.1 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS03765 -1.1 -6.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01320 -1.1 -6.3 phosphoenolpyruvate carboxykinase compare
PFLU_RS27375 -1.1 -4.2 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS03770 -1.1 -7.4 sulfate adenylyltransferase subunit CysN compare
PFLU_RS04565 -1.1 -1.3 TMEM165/GDT1 family protein compare
PFLU_RS18910 -1.1 -3.1 MarR family transcriptional regulator compare
PFLU_RS22725 -1.1 -2.3 transcriptional regulator compare
PFLU_RS25735 -1.1 -1.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS15610 -1.1 -3.7 helix-turn-helix transcriptional regulator compare
PFLU_RS27265 -1.1 -2.7 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS00415 -1.1 -1.3 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS15065 -1.1 -3.8 IclR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source p-Coumaric acid in Pseudomonas fluorescens SBW25-INTG

For carbon source p-Coumaric acid across organisms