Experiment set27S462 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Vanillic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS16045 -4.7 -6.3 aromatic ring-hydroxylating dioxygenase subunit alpha conserved
PFLU_RS06755 -3.9 -11.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS20540 -3.8 -11.6 phosphoribosylanthranilate isomerase compare
PFLU_RS12975 -3.8 -6.6 DUF934 domain-containing protein compare
PFLU_RS20565 -3.7 -16.2 3-isopropylmalate dehydrogenase compare
PFLU_RS05965 -3.6 -1.8 hypothetical protein compare
PFLU_RS06725 -3.6 -11.2 CoA transferase subunit A compare
PFLU_RS07650 -3.6 -15.9 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS20510 -3.5 -15.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS12980 -3.5 -9.0 nitrite/sulfite reductase compare
PFLU_RS06745 -3.5 -7.0 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS16050 -3.5 -8.2 oxidoreductase conserved
PFLU_RS28695 -3.4 -10.0 phosphoglycerate dehydrogenase compare
PFLU_RS28390 -3.4 -12.7 methionine biosynthesis protein MetW compare
PFLU_RS06760 -3.4 -13.3 3-oxoadipate enol-lactonase compare
PFLU_RS06715 -3.4 -12.5 IclR family transcriptional regulator compare
PFLU_RS18530 -3.4 -3.3 DNA translocase FtsK compare
PFLU_RS25640 -3.4 -15.3 ketol-acid reductoisomerase compare
PFLU_RS06740 -3.4 -12.7 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS06765 -3.3 -7.6 4-carboxymuconolactone decarboxylase compare
PFLU_RS06730 -3.3 -13.4 CoA-transferase subunit beta compare
PFLU_RS25360 -3.3 -9.7 glutamate 5-kinase compare
PFLU_RS20580 -3.3 -14.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS06735 -3.3 -8.5 3-oxoadipyl-CoA thiolase compare
PFLU_RS03240 -3.3 -17.5 copper-translocating P-type ATPase compare
PFLU_RS07695 -3.3 -4.9 beta-N-acetylhexosaminidase compare
PFLU_RS24765 -3.3 -22.5 2-isopropylmalate synthase compare
PFLU_RS27370 -3.2 -15.0 anthranilate phosphoribosyltransferase compare
PFLU_RS08505 -3.2 -7.8 protease HtpX compare
PFLU_RS28535 -3.1 -17.9 dihydroxy-acid dehydratase compare
PFLU_RS23305 -3.1 -11.8 arginine N-succinyltransferase compare
PFLU_RS29875 -3.1 -19.8 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS20575 -3.1 -7.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27365 -3.1 -11.8 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28655 -3.0 -13.1 HAD family hydrolase compare
PFLU_RS03970 -3.0 -12.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS04465 -3.0 -10.9 ATP phosphoribosyltransferase compare
PFLU_RS02590 -3.0 -10.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28645 -3.0 -16.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28385 -3.0 -15.5 homoserine O-acetyltransferase compare
PFLU_RS02490 -3.0 -15.2 phosphoserine phosphatase SerB compare
PFLU_RS18505 -2.9 -8.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01620 -2.9 -9.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04470 -2.9 -12.4 histidinol dehydrogenase compare
PFLU_RS24590 -2.9 -4.3 cytochrome c assembly protein compare
PFLU_RS19170 -2.8 -3.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS28165 -2.8 -13.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS25715 -2.8 -9.8 RNA polymerase-binding protein DksA compare
PFLU_RS01610 -2.8 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS04385 -2.8 -10.1 RNase adapter RapZ compare
PFLU_RS01900 -2.8 -7.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24825 -2.7 -4.5 Fe-S cluster assembly protein IscX compare
PFLU_RS23680 -2.7 -15.9 long-chain fatty acid--CoA ligase compare
PFLU_RS19375 -2.7 -12.5 branched-chain amino acid aminotransferase compare
PFLU_RS23070 -2.7 -1.9 50S ribosomal protein L32 compare
PFLU_RS23310 -2.7 -9.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS22835 -2.7 -9.8 amidotransferase compare
PFLU_RS24025 -2.7 -13.5 quinolinate synthase NadA compare
PFLU_RS00175 -2.7 -9.0 tryptophan synthase subunit alpha compare
PFLU_RS07640 -2.6 -12.5 universal stress protein compare
PFLU_RS29885 -2.6 -12.5 LysR family transcriptional regulator compare
PFLU_RS25800 -2.6 -5.5 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS21965 -2.6 -15.3 transporter compare
PFLU_RS05890 -2.6 -1.4 recombination regulator RecX compare
PFLU_RS00180 -2.6 -8.4 tryptophan synthase subunit beta compare
PFLU_RS01605 -2.5 -8.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29760 -2.5 -10.1 phosphate ABC transporter permease PstA compare
PFLU_RS29095 -2.5 -19.8 polyphosphate kinase 1 compare
PFLU_RS29880 -2.5 -13.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25750 -2.4 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS27620 -2.4 -17.2 acyl-CoA dehydrogenase compare
PFLU_RS07910 -2.4 -3.1 type 1 fimbrial protein compare
PFLU_RS29290 -2.4 -4.5 hypothetical protein compare
PFLU_RS22095 -2.4 -13.7 GTP diphosphokinase compare
PFLU_RS04325 -2.4 -13.3 ribonuclease G compare
PFLU_RS08410 -2.3 -9.9 HTH-type transcriptional regulator CysB compare
PFLU_RS22735 -2.3 -11.3 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS01895 -2.3 -7.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS03665 -2.3 -6.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS02180 -2.3 -1.6 thioredoxin TrxC compare
PFLU_RS28650 -2.3 -6.6 RNA pyrophosphohydrolase compare
PFLU_RS24790 -2.2 -5.8 tetratricopeptide repeat protein compare
PFLU_RS19175 -2.2 -7.1 trigger factor compare
PFLU_RS24085 -2.2 -2.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS27475 -2.2 -3.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS10765 -2.2 -8.5 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS09670 -2.2 -2.7 integrating conjugative element protein compare
PFLU_RS20515 -2.2 -5.0 amidophosphoribosyltransferase compare
PFLU_RS06395 -2.1 -9.7 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
PFLU_RS14050 -2.1 -1.9 hypothetical protein compare
PFLU_RS22105 -2.1 -3.7 cysteine synthase CysM compare
PFLU_RS18410 -2.1 -2.5 response regulator compare
PFLU_RS21300 -2.1 -5.0 cysteine hydrolase compare
PFLU_RS13540 -2.0 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS22195 -2.0 -3.6 DEAD/DEAH box helicase compare
PFLU_RS29255 -2.0 -3.6 iron donor protein CyaY compare
PFLU_RS29515 -2.0 -11.8 RidA family protein compare
PFLU_RS29735 -2.0 -9.7 HlyC/CorC family transporter compare
PFLU_RS00415 -2.0 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS07225 -2.0 -14.0 L-aspartate oxidase compare
PFLU_RS09055 -2.0 -2.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28965 -2.0 -9.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS26565 -1.9 -1.5 rRNA maturation RNase YbeY compare
PFLU_RS01625 -1.9 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS07810 -1.9 -12.5 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS21060 -1.9 -4.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS11685 -1.9 -4.8 AraC family transcriptional regulator compare
PFLU_RS23065 -1.9 -9.8 phosphate acyltransferase PlsX compare
PFLU_RS26020 -1.8 -9.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS26635 -1.8 -3.7 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS21665 -1.8 -5.5 MinD/ParA family protein compare
PFLU_RS01320 -1.8 -8.9 phosphoenolpyruvate carboxykinase compare
PFLU_RS01645 -1.8 -7.9 S41 family peptidase compare
PFLU_RS22740 -1.8 -4.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS23920 -1.8 -2.8 septation protein A compare
PFLU_RS08370 -1.7 -5.2 hypothetical protein compare
PFLU_RS06130 -1.7 -8.2 phosphoenolpyruvate carboxylase compare
PFLU_RS18725 -1.7 -2.2 alpha/beta hydrolase compare
PFLU_RS21825 -1.7 -10.0 ketoacyl-ACP synthase III compare
PFLU_RS22630 -1.7 -12.2 phosphoenolpyruvate synthase compare
PFLU_RS08630 -1.7 -5.8 molybdopterin molybdotransferase MoeA compare
PFLU_RS09980 -1.7 -12.2 peptidase S41 compare
PFLU_RS29490 -1.7 -7.5 ribonuclease PH compare
PFLU_RS28915 -1.7 -10.7 glycine cleavage system aminomethyltransferase GcvT compare
PFLU_RS27440 -1.7 -6.3 nucleotidyltransferase family protein compare
PFLU_RS04650 -1.7 -12.0 ABC transporter substrate-binding protein compare
PFLU_RS01965 -1.7 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS23010 -1.7 -8.7 radical SAM protein compare
PFLU_RS04150 -1.7 -6.5 DUF1043 family protein compare
PFLU_RS25730 -1.7 -9.0 PAS domain S-box protein compare
PFLU_RS24560 -1.6 -8.3 site-specific tyrosine recombinase XerD compare
PFLU_RS26250 -1.6 -11.4 ferredoxin--NADP reductase compare
PFLU_RS07655 -1.6 -4.4 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS18665 -1.6 -3.3 NADH-quinone oxidoreductase subunit L compare
PFLU_RS04220 -1.6 -7.4 FadR family transcriptional regulator compare
PFLU_RS04945 -1.6 -3.4 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS27445 -1.6 -11.5 phosphotransferase compare
PFLU_RS19165 -1.6 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS11525 -1.6 -3.8 GntR family transcriptional regulator compare
PFLU_RS24095 -1.6 -2.5 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS03765 -1.6 -8.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS26905 -1.6 -8.5 transcriptional regulator NrdR compare
PFLU_RS03645 -1.6 -6.4 tetratricopeptide repeat protein compare
PFLU_RS06750 -1.6 -10.1 MFS transporter compare
PFLU_RS29750 -1.6 -4.8 phosphate signaling complex protein PhoU compare
PFLU_RS04930 -1.6 -9.7 PhoH family protein compare
PFLU_RS03770 -1.6 -9.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS02975 -1.5 -6.4 precorrin-3B synthase compare
PFLU_RS02205 -1.5 -7.0 potassium/proton antiporter compare
PFLU_RS22895 -1.5 -12.4 PLP-dependent aminotransferase family protein compare
PFLU_RS20765 -1.5 -3.0 hypothetical protein compare
PFLU_RS01955 -1.5 -6.8 DUF971 domain-containing protein compare
PFLU_RS15420 -1.5 -3.8 hypothetical protein compare
PFLU_RS02790 -1.5 -1.8 TetR family transcriptional regulator compare
PFLU_RS08620 -1.5 -4.3 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS24090 -1.5 -3.2 Holliday junction branch migration protein RuvA compare
PFLU_RS26505 -1.5 -3.8 DUF2788 domain-containing protein compare
PFLU_RS08065 -1.4 -6.5 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS02370 -1.4 -6.6 glycosyltransferase compare
PFLU_RS04935 -1.4 -3.6 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS13350 -1.4 -1.4 ParD-like family protein compare
PFLU_RS30345 -1.4 -2.0 DUF2559 family protein compare
PFLU_RS31330 -1.4 -5.1 hypothetical protein compare
PFLU_RS05655 -1.4 -2.9 DeoR/GlpR family transcriptional regulator compare
PFLU_RS31615 -1.4 -3.4 hypothetical protein compare
PFLU_RS19160 -1.4 -7.9 endopeptidase La compare
PFLU_RS15065 -1.4 -3.4 IclR family transcriptional regulator compare
PFLU_RS00635 -1.4 -5.8 TauD/TfdA family dioxygenase compare
PFLU_RS13885 -1.4 -2.2 hypothetical protein compare
PFLU_RS07765 -1.4 -6.0 cupredoxin family protein compare
PFLU_RS07645 -1.4 -3.7 hypothetical protein compare
PFLU_RS27375 -1.3 -5.6 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS12580 -1.3 -7.2 MurR/RpiR family transcriptional regulator compare
PFLU_RS02355 -1.3 -6.4 GNAT family N-acetyltransferase compare
PFLU_RS18635 -1.3 -2.6 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS02365 -1.3 -6.9 glycosyltransferase compare
PFLU_RS27305 -1.3 -6.7 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS07245 -1.3 -6.7 DegQ family serine endoprotease compare
PFLU_RS01910 -1.3 -1.4 sterol-binding protein compare
PFLU_RS27380 -1.3 -8.2 anthranilate synthase component I compare
PFLU_RS13975 -1.3 -2.0 hypothetical protein compare
PFLU_RS14810 -1.3 -1.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS26405 -1.3 -8.4 acyl-CoA thioesterase II compare
PFLU_RS28690 -1.3 -9.3 FAD-binding oxidoreductase compare
PFLU_RS29275 -1.3 -5.7 DUF484 family protein compare
PFLU_RS18395 -1.3 -1.1 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS01670 -1.3 -5.2 protein-export chaperone SecB compare
PFLU_RS18675 -1.3 -2.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS02455 -1.3 -1.9 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS17495 -1.3 -2.1 hypothetical protein compare
PFLU_RS14500 -1.2 -3.8 hypothetical protein compare
PFLU_RS26535 -1.2 -5.3 thiamine phosphate synthase compare
PFLU_RS07665 -1.2 -2.2 type I DNA topoisomerase compare
PFLU_RS15005 -1.2 -1.9 hypothetical protein compare
PFLU_RS26770 -1.2 -7.1 DedA family protein compare
PFLU_RS06400 -1.2 -6.7 S-formylglutathione hydrolase compare
PFLU_RS29900 -1.2 -7.8 DNA helicase II compare
PFLU_RS15410 -1.2 -1.9 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS26890 -1.2 -5.4 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS26150 -1.2 -8.9 ATP-binding protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Vanillic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source Vanillic Acid across organisms