Experiment set27S461 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Vanillic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS03970 -4.2 -9.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS16045 -4.1 -5.6 aromatic ring-hydroxylating dioxygenase subunit alpha conserved
PFLU_RS06745 -4.1 -3.9 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS31530 -4.0 -1.5 transposase compare
PFLU_RS06755 -3.9 -9.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS20575 -3.9 -5.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20510 -3.8 -11.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS06725 -3.8 -8.5 CoA transferase subunit A compare
PFLU_RS06740 -3.7 -9.9 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS25360 -3.7 -7.0 glutamate 5-kinase compare
PFLU_RS03240 -3.6 -14.0 copper-translocating P-type ATPase compare
PFLU_RS20580 -3.6 -10.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -3.5 -13.5 3-isopropylmalate dehydrogenase compare
PFLU_RS06715 -3.5 -10.1 IclR family transcriptional regulator compare
PFLU_RS06735 -3.5 -7.7 3-oxoadipyl-CoA thiolase compare
PFLU_RS28385 -3.5 -12.8 homoserine O-acetyltransferase compare
PFLU_RS16050 -3.5 -6.2 oxidoreductase conserved
PFLU_RS12975 -3.5 -4.1 DUF934 domain-containing protein compare
PFLU_RS27370 -3.4 -12.3 anthranilate phosphoribosyltransferase compare
PFLU_RS27365 -3.4 -9.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28695 -3.4 -8.2 phosphoglycerate dehydrogenase compare
PFLU_RS06760 -3.4 -10.7 3-oxoadipate enol-lactonase compare
PFLU_RS24765 -3.4 -19.8 2-isopropylmalate synthase compare
PFLU_RS08505 -3.4 -5.1 protease HtpX compare
PFLU_RS28390 -3.4 -10.1 methionine biosynthesis protein MetW compare
PFLU_RS04465 -3.4 -9.2 ATP phosphoribosyltransferase compare
PFLU_RS25640 -3.3 -11.8 ketol-acid reductoisomerase compare
PFLU_RS29880 -3.3 -15.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS20540 -3.3 -10.1 phosphoribosylanthranilate isomerase compare
PFLU_RS06730 -3.3 -10.8 CoA-transferase subunit beta compare
PFLU_RS02490 -3.3 -13.2 phosphoserine phosphatase SerB compare
PFLU_RS07520 -3.3 -1.8 hypothetical protein compare
PFLU_RS24025 -3.2 -11.1 quinolinate synthase NadA compare
PFLU_RS04470 -3.2 -9.2 histidinol dehydrogenase compare
PFLU_RS12980 -3.2 -6.8 nitrite/sulfite reductase compare
PFLU_RS28535 -3.2 -15.0 dihydroxy-acid dehydratase compare
PFLU_RS06765 -3.1 -6.2 4-carboxymuconolactone decarboxylase compare
PFLU_RS01895 -3.1 -6.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS19375 -3.0 -11.6 branched-chain amino acid aminotransferase compare
PFLU_RS01900 -3.0 -5.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01605 -3.0 -6.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29875 -2.9 -17.0 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS07650 -2.9 -13.0 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS02590 -2.9 -8.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01610 -2.9 -8.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS25715 -2.9 -6.4 RNA polymerase-binding protein DksA compare
PFLU_RS18505 -2.9 -6.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS23680 -2.9 -15.7 long-chain fatty acid--CoA ligase compare
PFLU_RS28645 -2.8 -15.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01620 -2.8 -6.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS00180 -2.8 -6.0 tryptophan synthase subunit beta compare
PFLU_RS08410 -2.8 -9.4 HTH-type transcriptional regulator CysB compare
PFLU_RS29885 -2.8 -12.2 LysR family transcriptional regulator compare
PFLU_RS07640 -2.7 -10.3 universal stress protein compare
PFLU_RS18410 -2.7 -5.9 response regulator compare
PFLU_RS04015 -2.7 -3.1 1-phosphofructokinase compare
PFLU_RS28165 -2.7 -10.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS21965 -2.7 -14.8 transporter compare
PFLU_RS29095 -2.6 -19.3 polyphosphate kinase 1 compare
PFLU_RS04385 -2.6 -7.8 RNase adapter RapZ compare
PFLU_RS18725 -2.5 -2.1 alpha/beta hydrolase compare
PFLU_RS14810 -2.5 -2.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS23305 -2.5 -9.5 arginine N-succinyltransferase compare
PFLU_RS28650 -2.5 -4.4 RNA pyrophosphohydrolase compare
PFLU_RS22835 -2.5 -7.8 amidotransferase compare
PFLU_RS23310 -2.5 -7.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS28655 -2.5 -10.3 HAD family hydrolase compare
PFLU_RS00175 -2.5 -6.9 tryptophan synthase subunit alpha compare
PFLU_RS19170 -2.5 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS25750 -2.4 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS29735 -2.4 -10.7 HlyC/CorC family transporter compare
PFLU_RS26020 -2.4 -11.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS03665 -2.3 -5.1 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS24825 -2.3 -3.7 Fe-S cluster assembly protein IscX compare
PFLU_RS07225 -2.3 -14.1 L-aspartate oxidase compare
PFLU_RS18530 -2.3 -4.5 DNA translocase FtsK compare
PFLU_RS04325 -2.3 -10.9 ribonuclease G compare
PFLU_RS14440 -2.3 -1.6 hypothetical protein compare
PFLU_RS30345 -2.3 -3.4 DUF2559 family protein compare
PFLU_RS17545 -2.3 -1.5 DUF465 domain-containing protein compare
PFLU_RS22095 -2.2 -13.5 GTP diphosphokinase compare
PFLU_RS31330 -2.2 -6.1 hypothetical protein compare
PFLU_RS23070 -2.2 -1.5 50S ribosomal protein L32 compare
PFLU_RS27440 -2.2 -5.1 nucleotidyltransferase family protein compare
PFLU_RS20515 -2.2 -3.0 amidophosphoribosyltransferase compare
PFLU_RS29515 -2.2 -10.6 RidA family protein compare
PFLU_RS22630 -2.2 -14.2 phosphoenolpyruvate synthase compare
PFLU_RS29760 -2.2 -7.7 phosphate ABC transporter permease PstA compare
PFLU_RS24790 -2.2 -4.3 tetratricopeptide repeat protein compare
PFLU_RS25800 -2.1 -4.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS09670 -2.1 -2.6 integrating conjugative element protein compare
PFLU_RS03235 -2.1 -4.5 Cu(I)-responsive transcriptional regulator compare
PFLU_RS27620 -2.1 -13.6 acyl-CoA dehydrogenase compare
PFLU_RS24785 -2.1 -7.6 outer membrane protein assembly factor BamB compare
PFLU_RS02355 -2.0 -6.2 GNAT family N-acetyltransferase compare
PFLU_RS29490 -2.0 -6.1 ribonuclease PH compare
PFLU_RS19165 -2.0 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS17580 -2.0 -2.9 repressor LexA compare
PFLU_RS04945 -2.0 -3.2 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS19175 -2.0 -5.6 trigger factor compare
PFLU_RS24085 -2.0 -1.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS10765 -2.0 -8.8 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS11525 -2.0 -3.8 GntR family transcriptional regulator compare
PFLU_RS26250 -2.0 -12.1 ferredoxin--NADP reductase compare
PFLU_RS23065 -1.9 -8.7 phosphate acyltransferase PlsX compare
PFLU_RS18675 -1.9 -2.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS07810 -1.9 -11.7 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS12715 -1.9 -1.5 fumarylacetoacetate hydrolase family protein compare
PFLU_RS29165 -1.9 -4.0 TIGR02444 family protein compare
PFLU_RS13665 -1.9 -1.3 MarR family transcriptional regulator compare
PFLU_RS00530 -1.9 -2.7 DUF2388 domain-containing protein compare
PFLU_RS21300 -1.9 -4.2 cysteine hydrolase compare
PFLU_RS22735 -1.9 -8.7 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS21060 -1.8 -4.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS13540 -1.8 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS06395 -1.8 -7.5 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
PFLU_RS03770 -1.8 -10.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS22105 -1.8 -3.1 cysteine synthase CysM compare
PFLU_RS01645 -1.8 -6.2 S41 family peptidase compare
PFLU_RS04530 -1.8 -2.5 hypothetical protein compare
PFLU_RS06130 -1.7 -8.0 phosphoenolpyruvate carboxylase compare
PFLU_RS29900 -1.7 -8.8 DNA helicase II compare
PFLU_RS27475 -1.7 -3.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS17950 -1.7 -1.8 hypothetical protein compare
PFLU_RS04150 -1.7 -6.8 DUF1043 family protein compare
PFLU_RS27445 -1.7 -11.1 phosphotransferase compare
PFLU_RS24560 -1.7 -7.0 site-specific tyrosine recombinase XerD compare
PFLU_RS24205 -1.7 -1.1 DNA binding protein compare
PFLU_RS28965 -1.6 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS30630 -1.6 -1.2 hypothetical protein compare
PFLU_RS09055 -1.6 -2.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS27465 -1.6 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS14775 -1.6 -1.9 enoyl-CoA hydratase compare
PFLU_RS02775 -1.6 -1.5 urease accessory protein UreF compare
PFLU_RS22895 -1.6 -12.4 PLP-dependent aminotransferase family protein compare
PFLU_RS06750 -1.6 -10.0 MFS transporter compare
PFLU_RS23920 -1.6 -1.5 septation protein A compare
PFLU_RS30590 -1.6 -1.5 hypothetical protein compare
PFLU_RS09980 -1.6 -10.7 peptidase S41 compare
PFLU_RS30610 -1.6 -3.8 IS3 family transposase compare
PFLU_RS26570 -1.6 -4.4 HlyC/CorC family transporter compare
PFLU_RS24095 -1.6 -1.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS28080 -1.6 -3.4 hypothetical protein compare
PFLU_RS25675 -1.6 -5.5 pentapeptide repeat-containing protein compare
PFLU_RS07255 -1.6 -4.2 sulfurtransferase TusA family protein compare
PFLU_RS26905 -1.6 -7.8 transcriptional regulator NrdR compare
PFLU_RS05655 -1.5 -2.3 DeoR/GlpR family transcriptional regulator compare
PFLU_RS24145 -1.5 -3.7 mechanosensitive ion channel compare
PFLU_RS29290 -1.5 -3.3 hypothetical protein compare
PFLU_RS25730 -1.5 -6.6 PAS domain S-box protein compare
PFLU_RS01315 -1.5 -2.3 Hsp33 family molecular chaperone HslO compare
PFLU_RS29275 -1.5 -5.3 DUF484 family protein compare
PFLU_RS07655 -1.5 -4.8 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS29280 -1.5 -6.2 tyrosine recombinase XerC compare
PFLU_RS00635 -1.5 -5.5 TauD/TfdA family dioxygenase compare
PFLU_RS02790 -1.5 -1.6 TetR family transcriptional regulator compare
PFLU_RS04930 -1.5 -8.3 PhoH family protein compare
PFLU_RS21825 -1.5 -7.5 ketoacyl-ACP synthase III compare
PFLU_RS03765 -1.5 -7.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS08165 -1.5 -2.2 acyl carrier protein compare
PFLU_RS01320 -1.5 -6.7 phosphoenolpyruvate carboxykinase compare
PFLU_RS23010 -1.5 -7.1 radical SAM protein compare
PFLU_RS24090 -1.5 -2.2 Holliday junction branch migration protein RuvA compare
PFLU_RS04650 -1.5 -9.7 ABC transporter substrate-binding protein compare
PFLU_RS26635 -1.4 -2.9 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS26545 -1.4 -6.4 sel1 repeat family protein compare
PFLU_RS29550 -1.4 -5.8 ATP-dependent DNA helicase RecG compare
PFLU_RS02370 -1.4 -5.8 glycosyltransferase compare
PFLU_RS27265 -1.4 -2.6 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS18665 -1.4 -2.4 NADH-quinone oxidoreductase subunit L compare
PFLU_RS18735 -1.4 -1.1 hypothetical protein compare
PFLU_RS01955 -1.4 -5.3 DUF971 domain-containing protein compare
PFLU_RS02205 -1.4 -6.1 potassium/proton antiporter compare
PFLU_RS19160 -1.4 -6.8 endopeptidase La compare
PFLU_RS27375 -1.4 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS17425 -1.4 -3.7 ABC transporter ATP-binding protein compare
PFLU_RS18395 -1.4 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS29770 -1.4 -8.2 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS08125 -1.3 -1.9 integration host factor subunit beta compare
PFLU_RS12660 -1.3 -4.6 hypothetical protein compare
PFLU_RS04220 -1.3 -5.5 FadR family transcriptional regulator compare
PFLU_RS05210 -1.3 -2.1 HU family DNA-binding protein compare
PFLU_RS28915 -1.3 -8.0 glycine cleavage system aminomethyltransferase GcvT compare
PFLU_RS07280 -1.3 -8.0 outer membrane protein assembly factor BamC compare
PFLU_RS27380 -1.3 -8.4 anthranilate synthase component I compare
PFLU_RS12205 -1.3 -2.4 DNA binding protein compare
PFLU_RS21380 -1.3 -4.7 hydroxyisourate hydrolase compare
PFLU_RS18080 -1.3 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS21665 -1.3 -3.7 MinD/ParA family protein compare
PFLU_RS15310 -1.3 -1.8 YgdI/YgdR family lipoprotein compare
PFLU_RS08065 -1.3 -5.2 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS17060 -1.3 -1.6 monooxygenase compare
PFLU_RS21425 -1.3 -3.0 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS15420 -1.3 -3.4 hypothetical protein compare
PFLU_RS06815 -1.3 -5.9 TetR family transcriptional regulator compare
PFLU_RS06400 -1.3 -6.2 S-formylglutathione hydrolase compare
PFLU_RS01965 -1.3 -0.9 ATP-dependent protease subunit HslV compare
PFLU_RS03645 -1.3 -4.6 tetratricopeptide repeat protein compare
PFLU_RS18600 -1.3 -4.6 GNAT family N-acetyltransferase compare
PFLU_RS22725 -1.3 -1.7 transcriptional regulator compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Vanillic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source Vanillic Acid across organisms