Experiment set27S460 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Vanillic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS18420 -4.7 -3.1 hypothetical protein compare
PFLU_RS00870 -3.9 -2.6 hypothetical protein compare
PFLU_RS23070 -3.4 -1.6 50S ribosomal protein L32 compare
PFLU_RS12975 -3.3 -5.4 DUF934 domain-containing protein compare
PFLU_RS16045 -3.1 -6.7 aromatic ring-hydroxylating dioxygenase subunit alpha conserved
PFLU_RS02790 -3.0 -2.3 TetR family transcriptional regulator compare
PFLU_RS12980 -3.0 -9.6 nitrite/sulfite reductase compare
PFLU_RS06715 -2.9 -12.8 IclR family transcriptional regulator compare
PFLU_RS19375 -2.8 -11.5 branched-chain amino acid aminotransferase compare
PFLU_RS20540 -2.8 -11.6 phosphoribosylanthranilate isomerase compare
PFLU_RS23310 -2.8 -8.9 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS19170 -2.8 -2.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS20715 -2.7 -2.8 iron ABC transporter permease compare
PFLU_RS06755 -2.6 -10.6 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS20565 -2.6 -14.9 3-isopropylmalate dehydrogenase compare
PFLU_RS16050 -2.6 -6.7 oxidoreductase conserved
PFLU_RS06735 -2.5 -7.3 3-oxoadipyl-CoA thiolase compare
PFLU_RS06730 -2.5 -9.8 CoA-transferase subunit beta compare
PFLU_RS18530 -2.5 -4.1 DNA translocase FtsK compare
PFLU_RS20580 -2.5 -12.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS06740 -2.5 -8.6 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS20510 -2.5 -13.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25715 -2.4 -9.7 RNA polymerase-binding protein DksA compare
PFLU_RS06760 -2.4 -10.2 3-oxoadipate enol-lactonase compare
PFLU_RS03665 -2.4 -6.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS18505 -2.4 -9.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS06725 -2.3 -8.6 CoA transferase subunit A compare
PFLU_RS01610 -2.3 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS20575 -2.3 -6.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02590 -2.3 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27370 -2.3 -11.3 anthranilate phosphoribosyltransferase compare
PFLU_RS03970 -2.3 -9.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS07650 -2.3 -11.4 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS27365 -2.2 -8.8 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01895 -2.2 -7.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS03240 -2.2 -12.3 copper-translocating P-type ATPase compare
PFLU_RS07695 -2.2 -3.9 beta-N-acetylhexosaminidase compare
PFLU_RS04470 -2.2 -10.5 histidinol dehydrogenase compare
PFLU_RS24025 -2.1 -10.0 quinolinate synthase NadA compare
PFLU_RS25640 -2.1 -12.0 ketol-acid reductoisomerase compare
PFLU_RS25800 -2.1 -6.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS23305 -2.1 -10.1 arginine N-succinyltransferase compare
PFLU_RS19175 -2.1 -6.4 trigger factor compare
PFLU_RS01620 -2.1 -8.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS22190 -2.1 -1.4 hypothetical protein compare
PFLU_RS20515 -2.1 -4.5 amidophosphoribosyltransferase compare
PFLU_RS24765 -2.1 -15.0 2-isopropylmalate synthase compare
PFLU_RS28535 -2.0 -11.9 dihydroxy-acid dehydratase compare
PFLU_RS23680 -2.0 -13.7 long-chain fatty acid--CoA ligase compare
PFLU_RS21300 -2.0 -4.5 cysteine hydrolase compare
PFLU_RS07910 -2.0 -1.9 type 1 fimbrial protein compare
PFLU_RS14805 -2.0 -2.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS22195 -2.0 -3.3 DEAD/DEAH box helicase compare
PFLU_RS04465 -2.0 -8.5 ATP phosphoribosyltransferase compare
PFLU_RS19165 -2.0 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS21360 -2.0 -1.6 MarR family transcriptional regulator compare
PFLU_RS27640 -1.9 -2.2 alpha/beta fold hydrolase compare
PFLU_RS28655 -1.9 -11.2 HAD family hydrolase compare
PFLU_RS28385 -1.9 -10.8 homoserine O-acetyltransferase compare
PFLU_RS06765 -1.9 -5.0 4-carboxymuconolactone decarboxylase compare
PFLU_RS22105 -1.9 -3.3 cysteine synthase CysM compare
PFLU_RS22835 -1.9 -8.9 amidotransferase compare
PFLU_RS07665 -1.9 -3.0 type I DNA topoisomerase compare
PFLU_RS21965 -1.9 -11.9 transporter compare
PFLU_RS15410 -1.9 -2.1 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS24825 -1.9 -3.8 Fe-S cluster assembly protein IscX compare
PFLU_RS08410 -1.9 -7.3 HTH-type transcriptional regulator CysB compare
PFLU_RS02490 -1.9 -10.5 phosphoserine phosphatase SerB compare
PFLU_RS29760 -1.9 -9.2 phosphate ABC transporter permease PstA compare
PFLU_RS08505 -1.9 -6.1 protease HtpX compare
PFLU_RS24085 -1.9 -2.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS24090 -1.8 -3.2 Holliday junction branch migration protein RuvA compare
PFLU_RS04325 -1.8 -11.8 ribonuclease G compare
PFLU_RS09055 -1.8 -2.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01900 -1.8 -7.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS27475 -1.8 -5.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS05655 -1.8 -2.8 DeoR/GlpR family transcriptional regulator compare
PFLU_RS06745 -1.8 -4.8 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS04565 -1.8 -1.5 TMEM165/GDT1 family protein compare
PFLU_RS29490 -1.7 -7.4 ribonuclease PH compare
PFLU_RS13540 -1.7 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS23920 -1.7 -1.8 septation protein A compare
PFLU_RS23065 -1.7 -7.8 phosphate acyltransferase PlsX compare
PFLU_RS00530 -1.7 -2.2 DUF2388 domain-containing protein compare
PFLU_RS22735 -1.7 -7.3 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS29880 -1.7 -9.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS06395 -1.7 -8.0 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
PFLU_RS10405 -1.7 -2.7 helix-turn-helix transcriptional regulator compare
PFLU_RS28695 -1.7 -6.1 phosphoglycerate dehydrogenase compare
PFLU_RS07225 -1.6 -10.7 L-aspartate oxidase compare
PFLU_RS28165 -1.6 -9.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS24205 -1.6 -1.5 DNA binding protein compare
PFLU_RS28390 -1.6 -7.5 methionine biosynthesis protein MetW compare
PFLU_RS24790 -1.6 -4.1 tetratricopeptide repeat protein compare
PFLU_RS22095 -1.6 -10.0 GTP diphosphokinase compare
PFLU_RS26570 -1.6 -4.4 HlyC/CorC family transporter compare
PFLU_RS07810 -1.6 -10.4 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS21060 -1.6 -3.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS17060 -1.6 -1.9 monooxygenase compare
PFLU_RS21425 -1.6 -3.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS29885 -1.6 -8.3 LysR family transcriptional regulator compare
PFLU_RS25360 -1.6 -5.7 glutamate 5-kinase compare
PFLU_RS00175 -1.5 -7.5 tryptophan synthase subunit alpha compare
PFLU_RS09980 -1.5 -10.8 peptidase S41 compare
PFLU_RS07255 -1.5 -4.1 sulfurtransferase TusA family protein compare
PFLU_RS07645 -1.5 -3.6 hypothetical protein compare
PFLU_RS29875 -1.5 -10.2 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS12260 -1.5 -1.4 hypothetical protein compare
PFLU_RS29515 -1.5 -7.6 RidA family protein compare
PFLU_RS00180 -1.5 -6.7 tryptophan synthase subunit beta compare
PFLU_RS24095 -1.5 -1.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS23295 -1.5 -6.0 N-succinylarginine dihydrolase compare
PFLU_RS08620 -1.5 -4.5 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS27620 -1.4 -10.4 acyl-CoA dehydrogenase compare
PFLU_RS29735 -1.4 -7.4 HlyC/CorC family transporter compare
PFLU_RS04835 -1.4 -1.3 hypothetical protein compare
PFLU_RS01315 -1.4 -2.6 Hsp33 family molecular chaperone HslO compare
PFLU_RS28915 -1.4 -8.7 glycine cleavage system aminomethyltransferase GcvT compare
PFLU_RS26635 -1.4 -4.4 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS04385 -1.4 -6.3 RNase adapter RapZ compare
PFLU_RS21215 -1.4 -1.5 YheU family protein compare
PFLU_RS01605 -1.4 -5.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS12220 -1.4 -2.4 AraC family transcriptional regulator compare
PFLU_RS08630 -1.4 -4.0 molybdopterin molybdotransferase MoeA compare
PFLU_RS01955 -1.3 -6.2 DUF971 domain-containing protein compare
PFLU_RS14810 -1.3 -1.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS28645 -1.3 -8.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS14480 -1.3 -5.0 molybdate ABC transporter permease subunit compare
PFLU_RS22630 -1.3 -9.5 phosphoenolpyruvate synthase compare
PFLU_RS06130 -1.3 -6.7 phosphoenolpyruvate carboxylase compare
PFLU_RS27420 -1.3 -2.1 response regulator transcription factor compare
PFLU_RS25750 -1.3 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS02975 -1.3 -5.4 precorrin-3B synthase compare
PFLU_RS23380 -1.3 -1.6 HAD-IB family hydrolase compare
PFLU_RS01625 -1.3 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS07640 -1.3 -5.7 universal stress protein compare
PFLU_RS28965 -1.3 -6.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS03770 -1.3 -7.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS18675 -1.3 -2.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS02565 -1.3 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS26020 -1.3 -6.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS29095 -1.3 -10.7 polyphosphate kinase 1 compare
PFLU_RS13035 -1.3 -2.9 cobalamin biosynthesis protein CobW compare
PFLU_RS21520 -1.2 -2.3 thioesterase compare
PFLU_RS21825 -1.2 -7.0 ketoacyl-ACP synthase III compare
PFLU_RS22740 -1.2 -3.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS04650 -1.2 -7.9 ABC transporter substrate-binding protein compare
PFLU_RS26505 -1.2 -2.7 DUF2788 domain-containing protein compare
PFLU_RS31315 -1.2 -2.6 hypothetical protein compare
PFLU_RS23010 -1.2 -6.3 radical SAM protein compare
PFLU_RS29275 -1.2 -4.7 DUF484 family protein compare
PFLU_RS29310 -1.2 -0.8 accessory factor UbiK family protein compare
PFLU_RS27440 -1.2 -3.2 nucleotidyltransferase family protein compare
PFLU_RS07655 -1.2 -3.2 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS25735 -1.2 -1.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS15065 -1.2 -4.0 IclR family transcriptional regulator compare
PFLU_RS04930 -1.2 -6.6 PhoH family protein compare
PFLU_RS10955 -1.2 -3.8 peptide-methionine (S)-S-oxide reductase MsrA compare
PFLU_RS04220 -1.2 -5.4 FadR family transcriptional regulator compare
PFLU_RS28650 -1.2 -3.9 RNA pyrophosphohydrolase compare
PFLU_RS06750 -1.2 -7.7 MFS transporter compare
PFLU_RS01910 -1.2 -1.3 sterol-binding protein compare
PFLU_RS05340 -1.2 -1.8 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS29900 -1.2 -7.1 DNA helicase II compare
PFLU_RS25730 -1.2 -7.4 PAS domain S-box protein compare
PFLU_RS31330 -1.2 -2.7 hypothetical protein compare
PFLU_RS22895 -1.2 -9.3 PLP-dependent aminotransferase family protein compare
PFLU_RS26250 -1.1 -7.0 ferredoxin--NADP reductase compare
PFLU_RS12580 -1.1 -4.9 MurR/RpiR family transcriptional regulator compare
PFLU_RS18395 -1.1 -1.0 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS18865 -1.1 -2.6 Na+/H+ antiporter subunit G compare
PFLU_RS13365 -1.1 -1.2 hypothetical protein compare
PFLU_RS01070 -1.1 -2.2 alpha/beta hydrolase compare
PFLU_RS31530 -1.1 -0.8 transposase compare
PFLU_RS15310 -1.1 -1.9 YgdI/YgdR family lipoprotein compare
PFLU_RS03645 -1.1 -5.3 tetratricopeptide repeat protein compare
PFLU_RS25740 -1.1 -3.8 polynucleotide adenylyltransferase PcnB compare
PFLU_RS21995 -1.1 -2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS14320 -1.1 -1.2 DUF2946 domain-containing protein compare
PFLU_RS07685 -1.1 -2.2 transcriptional repressor LexA compare
PFLU_RS00635 -1.1 -4.4 TauD/TfdA family dioxygenase compare
PFLU_RS31650 -1.1 -1.7 hypothetical protein compare
PFLU_RS07735 -1.1 -3.1 PilZ domain-containing protein compare
PFLU_RS30030 -1.1 -0.8 membrane protein compare
PFLU_RS23460 -1.1 -1.7 antibiotic biosynthesis monooxygenase compare
PFLU_RS13040 -1.1 -6.9 cobaltochelatase subunit CobN compare
PFLU_RS06570 -1.1 -2.9 glycine zipper 2TM domain-containing protein compare
PFLU_RS18055 -1.1 -1.6 hydrolase compare
PFLU_RS23240 -1.1 -6.3 magnesium transporter compare
PFLU_RS20290 -1.1 -1.1 integration host factor subunit alpha compare
PFLU_RS02355 -1.1 -3.4 GNAT family N-acetyltransferase compare
PFLU_RS15610 -1.1 -3.1 helix-turn-helix transcriptional regulator compare
PFLU_RS04150 -1.1 -4.3 DUF1043 family protein compare
PFLU_RS06055 -1.0 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS27375 -1.0 -3.0 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS08875 -1.0 -1.8 heme-binding protein compare
PFLU_RS02765 -1.0 -1.4 HupE/UreJ family protein compare
PFLU_RS18665 -1.0 -2.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS08370 -1.0 -1.8 hypothetical protein compare
PFLU_RS04935 -1.0 -3.1 cyclic pyranopterin monophosphate synthase MoaC compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Vanillic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source Vanillic Acid across organisms