Experiment set27S460 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Vanillic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS00460 +5.3 43.4 glutamate/aspartate:proton symporter GltP compare
PFLU_RS29810 +5.2 38.1 LysR family transcriptional regulator compare
PFLU_RS05690 +5.1 9.7 Grx4 family monothiol glutaredoxin compare
PFLU_RS29480 +4.7 40.2 exodeoxyribonuclease III compare
PFLU_RS25865 +4.5 9.6 YhbY family RNA-binding protein compare
PFLU_RS02275 +4.4 11.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS14715 +4.4 21.8 protein-glutamate O-methyltransferase CheR compare
PFLU_RS25200 +3.8 26.0 protoheme IX farnesyltransferase compare
PFLU_RS29815 +3.6 14.1 aspartate ammonia-lyase compare
PFLU_RS25205 +3.5 15.4 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS00040 +3.3 29.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS25215 +3.3 23.3 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS22600 +3.3 10.1 RNA polymerase sigma factor SigX compare
PFLU_RS25220 +3.3 18.7 ubiquinol oxidase subunit II compare
PFLU_RS25210 +3.2 16.9 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS00445 +3.2 10.8 hypothetical protein compare
PFLU_RS12915 +3.2 7.4 methyltransferase domain-containing protein compare
PFLU_RS24175 +3.1 20.3 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS08650 +3.1 11.3 heme exporter protein CcmB compare
PFLU_RS04140 +3.0 9.0 response regulator transcription factor compare
PFLU_RS07725 +3.0 7.8 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS10430 +2.9 12.5 peptidase compare
PFLU_RS08655 +2.9 12.1 heme ABC transporter permease compare
PFLU_RS18885 +2.7 5.4 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS29780 +2.6 17.3 acyl-CoA thioesterase compare
PFLU_RS13010 +2.6 9.6 Fe-S biogenesis protein NfuA compare
PFLU_RS08675 +2.5 11.6 DsbE family thiol:disulfide interchange protein compare
PFLU_RS02580 +2.5 17.1 FtsH protease activity modulator HflK compare
PFLU_RS23325 +2.5 17.6 GlxA family transcriptional regulator compare
PFLU_RS08665 +2.5 11.3 cytochrome c maturation protein CcmE compare
PFLU_RS08660 +2.4 6.6 heme exporter protein CcmD compare
PFLU_RS08670 +2.4 14.7 heme lyase CcmF/NrfE family subunit compare
PFLU_RS02585 +2.4 11.7 protease modulator HflC compare
PFLU_RS02575 +2.3 12.0 GTPase HflX compare
PFLU_RS31075 +2.2 8.9 hypothetical protein compare
PFLU_RS28905 +2.0 16.0 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS13715 +1.9 2.3 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS25790 +1.9 9.1 polyribonucleotide nucleotidyltransferase compare
PFLU_RS06800 +1.8 12.7 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS24900 +1.8 7.1 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS21795 +1.8 15.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04155 +1.8 7.0 alpha/beta fold hydrolase compare
PFLU_RS00455 +1.8 5.6 hypothetical protein compare
PFLU_RS17130 +1.8 6.6 protein BatD compare
PFLU_RS23315 +1.6 8.2 aspartate aminotransferase family protein compare
PFLU_RS23220 +1.6 5.7 tRNA-Arg compare
PFLU_RS00465 +1.6 6.9 spore maturation protein compare
PFLU_RS05660 +1.5 11.9 glycerol kinase GlpK compare
PFLU_RS04175 +1.5 7.7 acyl-CoA dehydrogenase compare
PFLU_RS29505 +1.5 5.0 DNA-directed RNA polymerase subunit omega compare
PFLU_RS10595 +1.5 4.1 hypothetical protein compare
PFLU_RS24905 +1.5 11.6 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
PFLU_RS21960 +1.5 8.3 hypothetical protein compare
PFLU_RS24690 +1.5 11.3 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS23345 +1.5 10.7 ABC transporter permease compare
PFLU_RS08135 +1.5 5.8 glycosyltransferase compare
PFLU_RS06310 +1.4 8.0 sigma E protease regulator RseP compare
PFLU_RS26955 +1.4 10.2 sugar nucleotide-binding protein compare
PFLU_RS17105 +1.4 6.8 MoxR family ATPase compare
PFLU_RS23350 +1.4 8.4 ABC transporter substrate-binding protein compare
PFLU_RS01875 +1.4 1.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS17125 +1.4 8.2 VWA domain-containing protein compare
PFLU_RS17120 +1.4 6.5 VWA domain-containing protein compare
PFLU_RS00440 +1.4 9.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25025 +1.4 4.8 hypothetical protein compare
PFLU_RS30335 +1.3 6.2 AlpA family phage regulatory protein compare
PFLU_RS04165 +1.3 6.6 cell division protein ZapE compare
PFLU_RS31830 +1.3 2.2 hypothetical protein compare
PFLU_RS17110 +1.2 6.4 DUF58 domain-containing protein compare
PFLU_RS04135 +1.2 8.1 HAMP domain-containing histidine kinase compare
PFLU_RS08185 +1.2 8.6 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS30520 +1.2 5.3 ketoacyl-ACP synthase III compare
PFLU_RS02350 +1.2 7.5 carbamoyltransferase compare
PFLU_RS12010 +1.2 3.8 amino acid metabolite efflux pump compare
PFLU_RS22100 +1.2 6.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PFLU_RS07630 +1.2 9.7 transglycosylase SLT domain-containing protein compare
PFLU_RS15990 +1.2 1.2 SDR family oxidoreductase compare
PFLU_RS23260 +1.2 5.3 carbon storage regulator CsrA compare
PFLU_RS02215 +1.2 2.8 hypothetical protein compare
PFLU_RS23340 +1.2 9.5 ABC transporter permease compare
PFLU_RS04455 +1.1 5.5 BolA family transcriptional regulator compare
PFLU_RS08180 +1.1 4.1 ketoacyl-ACP synthase III compare
PFLU_RS22535 +1.1 9.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS17115 +1.1 6.6 DUF4381 domain-containing protein compare
PFLU_RS06430 +1.1 6.9 RNA polymerase sigma factor RpoS compare
PFLU_RS21735 +1.1 7.7 flagellar hook-length control protein FliK compare
PFLU_RS21845 +1.1 7.8 flagellar basal body P-ring protein FlgI compare
PFLU_RS23180 +1.1 5.7 flagellar basal body rod protein FlgB compare
PFLU_RS18175 +1.1 2.0 sugar ABC transporter substrate-binding protein compare
PFLU_RS11380 +1.1 1.6 sarcosine oxidase subunit delta compare
PFLU_RS04485 +1.1 8.0 uracil phosphoribosyltransferase compare
PFLU_RS28910 +1.1 6.4 glycine cleavage system protein GcvH compare
PFLU_RS11415 +1.1 2.4 protein glxC compare
PFLU_RS30490 +1.1 2.8 hypothetical protein compare
PFLU_RS12740 +1.0 1.7 BcpO-related WXXGXW repeat protein compare
PFLU_RS28315 +1.0 1.0 response regulator compare
PFLU_RS21850 +1.0 7.7 flagellar basal body L-ring protein FlgH compare
PFLU_RS08600 +1.0 2.4 glutaredoxin family protein compare
PFLU_RS19910 +1.0 2.2 hypothetical protein compare
PFLU_RS08125 +1.0 2.7 integration host factor subunit beta compare
PFLU_RS31590 +1.0 1.6 hypothetical protein compare
PFLU_RS11850 +1.0 1.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS17095 +1.0 8.2 NAD-glutamate dehydrogenase compare
PFLU_RS04315 +1.0 2.0 rod shape-determining protein MreD compare
PFLU_RS14875 +1.0 2.6 hypothetical protein compare
PFLU_RS04075 +1.0 1.3 hypothetical protein compare
PFLU_RS05890 +1.0 1.3 recombination regulator RecX compare
PFLU_RS21910 +1.0 8.3 BamA/TamA family outer membrane protein compare
PFLU_RS00155 +1.0 5.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS18735 +1.0 1.3 hypothetical protein compare
PFLU_RS30530 +1.0 5.1 acetyltransferase compare
PFLU_RS17025 +0.9 5.1 HAAAP family serine/threonine permease compare
PFLU_RS30525 +0.9 6.0 SDR family oxidoreductase compare
PFLU_RS10340 +0.9 1.6 hypothetical protein compare
PFLU_RS21860 +0.9 4.6 flagellar basal body rod protein FlgF compare
PFLU_RS08105 +0.9 5.3 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS21855 +0.9 5.4 flagellar basal-body rod protein FlgG compare
PFLU_RS21695 +0.9 4.4 flagellar biosynthesis protein FlhB compare
PFLU_RS26290 +0.9 1.0 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS10135 +0.9 3.1 hypothetical protein compare
PFLU_RS30555 +0.9 1.6 hypothetical protein compare
PFLU_RS28340 +0.9 2.5 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
PFLU_RS13690 +0.9 3.2 AAA family ATPase compare
PFLU_RS30515 +0.9 2.3 Rieske 2Fe-2S domain-containing protein compare
PFLU_RS02980 +0.9 1.7 precorrin-8X methylmutase compare
PFLU_RS07770 +0.9 5.2 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
PFLU_RS03995 +0.9 1.2 hypothetical protein compare
PFLU_RS16935 +0.9 1.9 CoA ester lyase compare
PFLU_RS13205 +0.9 1.8 DUF883 family protein compare
PFLU_RS18095 +0.9 2.3 GlxA family transcriptional regulator compare
PFLU_RS01850 +0.9 5.1 transporter substrate-binding domain-containing protein compare
PFLU_RS21675 +0.9 7.0 flagellar biosynthesis protein FlhA compare
PFLU_RS23175 +0.9 3.7 flagellar basal body rod protein FlgC compare
PFLU_RS24040 +0.9 5.9 7-cyano-7-deazaguanine synthase QueC compare
PFLU_RS30730 +0.9 1.6 helix-turn-helix domain-containing protein compare
PFLU_RS21710 +0.8 5.1 flagellar type III secretion system pore protein FliP compare
PFLU_RS21705 +0.8 4.2 flagellar biosynthesis protein FliQ compare
PFLU_RS20545 +0.8 4.8 tRNA pseudouridine(38-40) synthase TruA compare
PFLU_RS21780 +0.8 2.9 flagellar hook-basal body complex protein FliE compare
PFLU_RS04440 +0.8 5.2 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS30770 +0.8 2.1 thioredoxin family protein compare
PFLU_RS06805 +0.8 7.4 efflux RND transporter permease subunit compare
PFLU_RS30485 +0.8 2.2 hypothetical protein compare
PFLU_RS21775 +0.8 5.7 flagellar basal body M-ring protein FliF compare
PFLU_RS31025 +0.8 3.3 DUF3309 domain-containing protein compare
PFLU_RS14170 +0.8 2.7 TIGR03067 domain-containing protein compare
PFLU_RS00065 +0.8 4.7 lysophospholipid acyltransferase compare
PFLU_RS12685 +0.8 1.9 hypothetical protein compare
PFLU_RS16945 +0.8 2.7 MmgE/PrpD family protein compare
PFLU_RS21925 +0.8 2.4 YecA family protein compare
PFLU_RS21240 +0.8 0.8 hypothetical protein compare
PFLU_RS21700 +0.8 3.8 flagellar type III secretion system protein FliR compare
PFLU_RS21755 +0.8 4.7 flagella biosynthesis chaperone FliJ compare
PFLU_RS05910 +0.8 1.4 response regulator transcription factor compare
PFLU_RS21645 +0.8 4.7 chemotaxis protein CheA compare
PFLU_RS00850 +0.8 2.1 hypothetical protein compare
PFLU_RS06810 +0.8 4.7 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS02045 +0.8 7.3 glutamate synthase large subunit compare
PFLU_RS15280 +0.8 2.3 hypothetical protein compare
PFLU_RS01285 +0.8 1.2 HAMP domain-containing protein compare
PFLU_RS04200 +0.8 6.3 cytochrome bc complex cytochrome b subunit compare
PFLU_RS18040 +0.8 2.6 GGDEF domain-containing protein compare
PFLU_RS23590 +0.8 1.0 gluconokinase compare
PFLU_RS16235 +0.8 3.4 transcriptional regulator GcvA compare
PFLU_RS18250 +0.8 2.1 DUF2160 domain-containing protein compare
PFLU_RS00880 +0.8 5.2 DUF927 domain-containing protein compare
PFLU_RS14045 +0.8 1.3 hypothetical protein compare
PFLU_RS05720 +0.8 5.3 OmpA family protein compare
PFLU_RS01130 +0.8 2.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS15810 +0.8 1.5 hypothetical protein compare
PFLU_RS29020 +0.8 4.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PFLU_RS28285 +0.8 1.7 hypothetical protein compare
PFLU_RS21660 +0.8 5.2 RNA polymerase sigma factor FliA compare
PFLU_RS15950 +0.8 1.7 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
PFLU_RS23195 +0.8 5.9 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS07235 +0.8 1.6 sigma factor AlgU negative regulatory protein compare
PFLU_RS31645 +0.8 1.9 hypothetical protein compare
PFLU_RS25680 +0.8 3.3 TfoX/Sxy family protein compare
PFLU_RS17180 +0.8 4.3 Gfo/Idh/MocA family oxidoreductase compare
PFLU_RS31215 +0.8 1.5 hypothetical protein compare
PFLU_RS18615 +0.7 1.1 NADH-quinone oxidoreductase subunit A compare
PFLU_RS00210 +0.7 1.1 OsmC family protein compare
PFLU_RS30445 +0.7 2.8 hypothetical protein compare
PFLU_RS13750 +0.7 1.4 hypothetical protein compare
PFLU_RS22520 +0.7 1.6 GntR family transcriptional regulator compare
PFLU_RS21760 +0.7 5.3 flagellar protein export ATPase FliI compare
PFLU_RS01880 +0.7 4.5 twin-arginine translocase subunit TatC compare
PFLU_RS21840 +0.7 4.8 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS02515 +0.7 2.3 flagellar motor protein MotB compare
PFLU_RS29185 +0.7 3.1 Rsd/AlgQ family anti-sigma factor compare
PFLU_RS09860 +0.7 2.9 biotin-dependent carboxyltransferase compare
PFLU_RS22390 +0.7 2.6 hypothetical protein compare
PFLU_RS31465 +0.7 4.0 hypothetical protein compare
PFLU_RS08145 +0.7 3.8 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS12850 +0.7 2.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS05345 +0.7 2.8 hypothetical protein compare
PFLU_RS07780 +0.7 1.8 hypothetical protein compare
PFLU_RS00535 +0.7 1.6 DUF1127 domain-containing protein compare
PFLU_RS03535 +0.7 1.9 YscO family type III secretion system apparatus protein compare
PFLU_RS18370 +0.7 2.7 low molecular weight phosphotyrosine protein phosphatase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Vanillic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source Vanillic Acid across organisms