Experiment set27S432 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Ornithine carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS26565 -4.8 -3.2 rRNA maturation RNase YbeY compare
PFLU_RS27370 -4.2 -11.0 anthranilate phosphoribosyltransferase compare
PFLU_RS27365 -4.0 -10.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28535 -4.0 -13.8 dihydroxy-acid dehydratase compare
PFLU_RS02230 -3.9 -21.7 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase conserved
PFLU_RS20565 -3.9 -12.4 3-isopropylmalate dehydrogenase compare
PFLU_RS20540 -3.8 -7.4 phosphoribosylanthranilate isomerase compare
PFLU_RS19395 -3.8 -6.8 Lrp/AsnC family transcriptional regulator compare
PFLU_RS28645 -3.8 -16.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS20575 -3.8 -6.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS25640 -3.7 -12.0 ketol-acid reductoisomerase compare
PFLU_RS28695 -3.7 -8.6 phosphoglycerate dehydrogenase compare
PFLU_RS20580 -3.6 -11.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20510 -3.6 -12.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS04465 -3.6 -9.3 ATP phosphoribosyltransferase compare
PFLU_RS04470 -3.6 -8.3 histidinol dehydrogenase compare
PFLU_RS02490 -3.6 -13.6 phosphoserine phosphatase SerB compare
PFLU_RS28390 -3.6 -10.4 methionine biosynthesis protein MetW compare
PFLU_RS24765 -3.5 -20.4 2-isopropylmalate synthase compare
PFLU_RS10325 -3.5 -8.9 MFS transporter compare
PFLU_RS06055 -3.4 -3.9 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS02590 -3.3 -8.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01605 -3.3 -6.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS04975 -3.3 -6.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01900 -3.3 -5.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01620 -3.3 -6.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28385 -3.3 -13.3 homoserine O-acetyltransferase compare
PFLU_RS22835 -3.3 -7.2 amidotransferase compare
PFLU_RS28165 -3.0 -10.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS00310 -3.0 -1.6 twin transmembrane helix small protein compare
PFLU_RS29095 -2.9 -22.4 polyphosphate kinase 1 compare
PFLU_RS00180 -2.9 -6.2 tryptophan synthase subunit beta compare
PFLU_RS19390 -2.9 -10.3 ornithine cyclodeaminase conserved
PFLU_RS04960 -2.9 -13.1 amino acid ABC transporter substrate-binding protein compare
PFLU_RS23340 -2.9 -18.4 ABC transporter permease compare
PFLU_RS23325 -2.8 -11.7 GlxA family transcriptional regulator compare
PFLU_RS05655 -2.8 -4.9 DeoR/GlpR family transcriptional regulator compare
PFLU_RS04715 -2.8 -5.8 D-alanine--D-alanine ligase compare
PFLU_RS12980 -2.7 -8.0 nitrite/sulfite reductase compare
PFLU_RS00175 -2.7 -7.1 tryptophan synthase subunit alpha compare
PFLU_RS19170 -2.7 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS10295 -2.6 -5.3 HAD-IA family hydrolase compare
PFLU_RS04660 -2.6 -7.4 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS27885 -2.6 -12.6 dimethylglycine demethylation protein DgcA compare
PFLU_RS25645 -2.6 -1.8 acetolactate synthase small subunit compare
PFLU_RS27440 -2.6 -5.5 nucleotidyltransferase family protein compare
PFLU_RS04220 -2.6 -6.7 FadR family transcriptional regulator compare
PFLU_RS12580 -2.5 -8.5 MurR/RpiR family transcriptional regulator compare
PFLU_RS23330 -2.5 -6.5 ATP-binding cassette domain-containing protein compare
PFLU_RS22190 -2.5 -1.3 hypothetical protein compare
PFLU_RS23350 -2.5 -11.3 ABC transporter substrate-binding protein compare
PFLU_RS18755 -2.5 -7.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS20515 -2.5 -3.3 amidophosphoribosyltransferase compare
PFLU_RS23345 -2.4 -12.6 ABC transporter permease compare
PFLU_RS27875 -2.4 -10.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS18505 -2.4 -7.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS27880 -2.4 -8.6 dimethylglycine demethylation protein DgcB compare
PFLU_RS26905 -2.4 -10.0 transcriptional regulator NrdR compare
PFLU_RS03665 -2.4 -5.0 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS21740 -2.4 -6.0 Hpt domain-containing protein compare
PFLU_RS12975 -2.3 -5.2 DUF934 domain-containing protein compare
PFLU_RS01610 -2.3 -9.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS14810 -2.3 -2.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS04970 -2.3 -10.6 amino acid ABC transporter permease compare
PFLU_RS27305 -2.3 -7.9 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS18675 -2.3 -1.5 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS04965 -2.3 -12.7 amino acid ABC transporter permease compare
PFLU_RS26290 -2.2 -1.2 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS27870 -2.2 -13.0 electron transfer flavoprotein subunit beta compare
PFLU_RS27445 -2.2 -14.9 phosphotransferase compare
PFLU_RS29815 -2.2 -4.1 aspartate ammonia-lyase compare
PFLU_RS08065 -2.1 -6.6 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS01895 -2.1 -6.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS20405 -2.1 -5.4 carbon storage regulator CsrA compare
PFLU_RS22645 -2.1 -13.0 EamA family transporter compare
PFLU_RS10340 -2.1 -1.9 hypothetical protein compare
PFLU_RS23285 -2.0 -9.7 succinylglutamate desuccinylase compare
PFLU_RS24245 -2.0 -7.8 PilZ domain-containing protein compare
PFLU_RS22095 -2.0 -13.5 GTP diphosphokinase compare
PFLU_RS25750 -2.0 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS07695 -2.0 -3.7 beta-N-acetylhexosaminidase compare
PFLU_RS22740 -2.0 -3.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS30160 -2.0 -2.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS24475 -2.0 -16.3 AmpG family muropeptide MFS transporter compare
PFLU_RS15410 -2.0 -1.9 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS01625 -2.0 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS25815 -1.9 -1.8 transcription termination/antitermination protein NusA compare
PFLU_RS01540 -1.9 -10.2 ABC transporter ATP-binding protein compare
PFLU_RS18665 -1.9 -2.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS09055 -1.9 -1.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS26020 -1.9 -11.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS19165 -1.9 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS02725 -1.9 -11.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PFLU_RS21805 -1.9 -10.0 flagellar export chaperone FliS compare
PFLU_RS28850 -1.9 -14.0 OprD family porin compare
PFLU_RS19160 -1.9 -7.7 endopeptidase La compare
PFLU_RS29275 -1.9 -6.5 DUF484 family protein compare
PFLU_RS00530 -1.9 -2.0 DUF2388 domain-containing protein compare
PFLU_RS03980 -1.8 -6.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS01995 -1.8 -8.6 malate dehydrogenase compare
PFLU_RS02745 -1.8 -7.7 ABC transporter ATP-binding protein compare
PFLU_RS21665 -1.8 -3.8 MinD/ParA family protein compare
PFLU_RS28795 -1.8 -11.6 glutamine synthetase compare
PFLU_RS03080 -1.8 -12.5 arginine decarboxylase compare
PFLU_RS28655 -1.8 -10.1 HAD family hydrolase compare
PFLU_RS15200 -1.8 -2.0 ABC transporter substrate-binding protein compare
PFLU_RS02735 -1.8 -11.4 high-affinity branched-chain amino acid ABC transporter permease LivM compare
PFLU_RS02730 -1.8 -12.9 branched-chain amino acid ABC transporter permease compare
PFLU_RS31755 -1.8 -1.4 hypothetical protein compare
PFLU_RS15610 -1.8 -4.5 helix-turn-helix transcriptional regulator compare
PFLU_RS18550 -1.7 -7.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS22195 -1.7 -3.1 DEAD/DEAH box helicase compare
PFLU_RS24695 -1.7 -1.8 PTS glucose transporter subunit IIB compare
PFLU_RS25800 -1.7 -4.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS01525 -1.7 -11.9 ABC transporter permease compare
PFLU_RS26835 -1.7 -2.9 exodeoxyribonuclease VII small subunit compare
PFLU_RS29760 -1.7 -8.1 phosphate ABC transporter permease PstA compare
PFLU_RS27475 -1.7 -3.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS23380 -1.7 -1.6 HAD-IB family hydrolase compare
PFLU_RS06815 -1.7 -6.9 TetR family transcriptional regulator compare
PFLU_RS19665 -1.7 -1.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS08535 -1.7 -9.6 response regulator compare
PFLU_RS10430 -1.7 -3.5 peptidase compare
PFLU_RS07255 -1.7 -3.5 sulfurtransferase TusA family protein compare
PFLU_RS21570 -1.6 -3.0 exonuclease compare
PFLU_RS13540 -1.6 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04195 -1.6 -5.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS28965 -1.6 -7.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS31440 -1.6 -1.9 hypothetical protein compare
PFLU_RS07520 -1.6 -1.5 hypothetical protein compare
PFLU_RS08160 -1.6 -5.3 sugar transferase compare
PFLU_RS09305 -1.6 -10.6 hypothetical protein compare
PFLU_RS04385 -1.6 -7.2 RNase adapter RapZ compare
PFLU_RS31330 -1.6 -4.5 hypothetical protein compare
PFLU_RS18670 -1.6 -1.1 NADH-quinone oxidoreductase subunit M compare
PFLU_RS20660 -1.6 -9.7 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS25730 -1.6 -6.5 PAS domain S-box protein compare
PFLU_RS19490 -1.6 -6.1 LacI family transcriptional regulator compare
PFLU_RS21060 -1.6 -3.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS18635 -1.5 -1.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS04005 -1.5 -7.6 catabolite repressor/activator compare
PFLU_RS29735 -1.5 -8.7 HlyC/CorC family transporter compare
PFLU_RS18940 -1.5 -7.4 acyl-CoA dehydrogenase compare
PFLU_RS07640 -1.5 -7.9 universal stress protein compare
PFLU_RS05585 -1.5 -4.6 MtnX-like HAD-IB family phosphatase compare
PFLU_RS01535 -1.5 -10.9 ABC transporter substrate-binding protein compare
PFLU_RS01765 -1.5 -6.6 histidine utilization repressor compare
PFLU_RS21820 -1.5 -8.3 flagellin compare
PFLU_RS18625 -1.5 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS04150 -1.5 -5.9 DUF1043 family protein compare
PFLU_RS00065 -1.5 -5.8 lysophospholipid acyltransferase compare
PFLU_RS09845 -1.4 -2.1 biotin carboxyl carrier domain-containing protein compare
PFLU_RS22895 -1.4 -11.5 PLP-dependent aminotransferase family protein compare
PFLU_RS01530 -1.4 -6.1 ABC transporter permease compare
PFLU_RS06310 -1.4 -5.2 sigma E protease regulator RseP compare
PFLU_RS07650 -1.4 -9.1 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS02740 -1.4 -6.2 ATP-binding cassette domain-containing protein compare
PFLU_RS27865 -1.4 -7.7 glycine-betaine demethylase subunit GbcA compare
PFLU_RS30165 -1.4 -6.3 ParA family protein compare
PFLU_RS26735 -1.4 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS29340 -1.4 -6.4 bifunctional diguanylate cyclase/phosphodiesterase compare
PFLU_RS29550 -1.4 -6.0 ATP-dependent DNA helicase RecG compare
PFLU_RS26145 -1.4 -1.4 hypothetical protein compare
PFLU_RS21830 -1.4 -11.3 flagellar hook-associated protein 3 compare
PFLU_RS21425 -1.4 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS18655 -1.4 -1.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS05750 -1.4 -1.9 methionine--tRNA ligase compare
PFLU_RS11620 -1.4 -8.2 FadR family transcriptional regulator compare
PFLU_RS27895 -1.4 -6.4 membrane dipeptidase compare
PFLU_RS22640 -1.4 -8.6 PLP-dependent aminotransferase family protein compare
PFLU_RS01910 -1.4 -1.3 sterol-binding protein compare
PFLU_RS22380 -1.4 -5.9 sulfite exporter TauE/SafE family protein compare
PFLU_RS18620 -1.4 -2.4 NADH-quinone oxidoreductase subunit B compare
PFLU_RS18645 -1.4 -0.9 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS24025 -1.4 -7.3 quinolinate synthase NadA compare
PFLU_RS23220 -1.4 -2.8 tRNA-Arg compare
PFLU_RS01880 -1.3 -8.0 twin-arginine translocase subunit TatC compare
PFLU_RS21810 -1.3 -10.8 flagellar filament capping protein FliD compare
PFLU_RS21915 -1.3 -4.3 MarR family transcriptional regulator compare
PFLU_RS27985 -1.3 -5.0 transcriptional regulator BetI compare
PFLU_RS00285 -1.3 -7.2 hypothetical protein compare
PFLU_RS23175 -1.3 -5.8 flagellar basal body rod protein FlgC compare
PFLU_RS18015 -1.3 -2.9 energy transducer TonB compare
PFLU_RS24590 -1.3 -3.3 cytochrome c assembly protein compare
PFLU_RS08185 -1.3 -7.0 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS26530 -1.3 -9.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS20545 -1.3 -5.0 tRNA pseudouridine(38-40) synthase TruA compare
PFLU_RS18640 -1.3 -0.9 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS22375 -1.3 -8.1 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS25925 -1.3 -1.9 RnfH family protein compare
PFLU_RS29555 -1.3 -8.1 HDOD domain-containing protein compare
PFLU_RS24090 -1.3 -2.2 Holliday junction branch migration protein RuvA compare
PFLU_RS02565 -1.3 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS21735 -1.3 -8.2 flagellar hook-length control protein FliK compare
PFLU_RS28690 -1.3 -8.0 FAD-binding oxidoreductase compare
PFLU_RS18395 -1.3 -0.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS04955 -1.3 -6.3 alpha/beta hydrolase compare
PFLU_RS14805 -1.3 -1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS28895 -1.3 -1.2 DUF2388 domain-containing protein compare
PFLU_RS28420 -1.3 -6.1 thiazole synthase compare


Specific Phenotypes

For 42 genes in this experiment

For carbon source L-Ornithine in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Ornithine across organisms