Experiment set27S431 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Ornithine carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS28535 -3.7 -16.4 dihydroxy-acid dehydratase compare
PFLU_RS25640 -3.6 -13.6 ketol-acid reductoisomerase compare
PFLU_RS06055 -3.5 -2.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS17545 -3.4 -1.7 DUF465 domain-containing protein compare
PFLU_RS24765 -3.3 -21.5 2-isopropylmalate synthase compare
PFLU_RS04465 -3.3 -10.3 ATP phosphoribosyltransferase compare
PFLU_RS02490 -3.2 -15.1 phosphoserine phosphatase SerB compare
PFLU_RS28165 -3.2 -11.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS20580 -3.2 -13.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS02230 -3.2 -22.7 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase conserved
PFLU_RS20540 -3.2 -11.4 phosphoribosylanthranilate isomerase compare
PFLU_RS20565 -3.1 -15.7 3-isopropylmalate dehydrogenase compare
PFLU_RS07525 -3.1 -2.7 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS01900 -3.1 -6.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS23325 -3.1 -12.4 GlxA family transcriptional regulator compare
PFLU_RS28385 -3.1 -14.3 homoserine O-acetyltransferase compare
PFLU_RS27365 -3.1 -11.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS10325 -3.0 -10.9 MFS transporter compare
PFLU_RS28645 -3.0 -16.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS31710 -3.0 -2.5 hypothetical protein compare
PFLU_RS01605 -3.0 -7.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS12975 -2.9 -5.2 DUF934 domain-containing protein compare
PFLU_RS20510 -2.9 -14.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28695 -2.9 -9.0 phosphoglycerate dehydrogenase compare
PFLU_RS27370 -2.9 -13.7 anthranilate phosphoribosyltransferase compare
PFLU_RS14805 -2.9 -2.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS04470 -2.9 -10.6 histidinol dehydrogenase compare
PFLU_RS28310 -2.9 -1.9 response regulator compare
PFLU_RS12980 -2.9 -8.6 nitrite/sulfite reductase compare
PFLU_RS05630 -2.9 -2.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS19390 -2.8 -11.1 ornithine cyclodeaminase conserved
PFLU_RS25815 -2.8 -2.7 transcription termination/antitermination protein NusA compare
PFLU_RS31530 -2.8 -1.4 transposase compare
PFLU_RS28390 -2.7 -10.0 methionine biosynthesis protein MetW compare
PFLU_RS04975 -2.7 -6.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS19170 -2.7 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS23285 -2.7 -12.1 succinylglutamate desuccinylase compare
PFLU_RS17495 -2.7 -2.0 hypothetical protein compare
PFLU_RS23345 -2.7 -12.4 ABC transporter permease compare
PFLU_RS02825 -2.6 -1.8 phosphate starvation-inducible protein PsiF compare
PFLU_RS22835 -2.6 -9.0 amidotransferase compare
PFLU_RS00180 -2.6 -8.0 tryptophan synthase subunit beta compare
PFLU_RS02590 -2.5 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS18505 -2.5 -7.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS20575 -2.5 -6.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS04565 -2.5 -1.8 TMEM165/GDT1 family protein compare
PFLU_RS23330 -2.5 -6.1 ATP-binding cassette domain-containing protein compare
PFLU_RS31330 -2.5 -6.6 hypothetical protein compare
PFLU_RS05020 -2.5 -1.6 DUF1120 domain-containing protein compare
PFLU_RS00175 -2.5 -7.6 tryptophan synthase subunit alpha compare
PFLU_RS27440 -2.5 -5.9 nucleotidyltransferase family protein compare
PFLU_RS30030 -2.5 -1.2 membrane protein compare
PFLU_RS14810 -2.5 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS12580 -2.4 -8.9 MurR/RpiR family transcriptional regulator compare
PFLU_RS29095 -2.4 -18.7 polyphosphate kinase 1 compare
PFLU_RS23350 -2.4 -10.0 ABC transporter substrate-binding protein compare
PFLU_RS23070 -2.4 -1.6 50S ribosomal protein L32 compare
PFLU_RS19395 -2.4 -6.2 Lrp/AsnC family transcriptional regulator compare
PFLU_RS27880 -2.4 -9.0 dimethylglycine demethylation protein DgcB compare
PFLU_RS23340 -2.4 -17.1 ABC transporter permease compare
PFLU_RS27875 -2.4 -9.8 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS01620 -2.4 -8.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS12175 -2.3 -1.6 methyl-accepting chemotaxis protein compare
PFLU_RS15610 -2.3 -4.6 helix-turn-helix transcriptional regulator compare
PFLU_RS15410 -2.3 -1.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS04960 -2.2 -12.1 amino acid ABC transporter substrate-binding protein compare
PFLU_RS01885 -2.2 -6.5 Sec-independent protein translocase subunit TatB compare
PFLU_RS20405 -2.2 -5.8 carbon storage regulator CsrA compare
PFLU_RS25645 -2.2 -2.6 acetolactate synthase small subunit compare
PFLU_RS04220 -2.2 -7.8 FadR family transcriptional regulator compare
PFLU_RS04965 -2.2 -12.1 amino acid ABC transporter permease compare
PFLU_RS17265 -2.2 -2.7 hypothetical protein compare
PFLU_RS23380 -2.2 -1.5 HAD-IB family hydrolase compare
PFLU_RS01610 -2.2 -10.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS08065 -2.2 -7.4 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS18665 -2.1 -2.5 NADH-quinone oxidoreductase subunit L compare
PFLU_RS08165 -2.1 -2.5 acyl carrier protein compare
PFLU_RS01540 -2.1 -10.6 ABC transporter ATP-binding protein compare
PFLU_RS01895 -2.1 -6.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS31800 -2.1 -2.8 hypothetical protein compare
PFLU_RS18675 -2.1 -2.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS10295 -2.1 -5.6 HAD-IA family hydrolase compare
PFLU_RS05655 -2.1 -3.9 DeoR/GlpR family transcriptional regulator compare
PFLU_RS21740 -2.0 -6.3 Hpt domain-containing protein compare
PFLU_RS27870 -2.0 -12.1 electron transfer flavoprotein subunit beta compare
PFLU_RS25750 -2.0 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS22740 -2.0 -4.0 phosphoadenylyl-sulfate reductase compare
PFLU_RS04970 -2.0 -10.4 amino acid ABC transporter permease compare
PFLU_RS14300 -2.0 -2.1 response regulator transcription factor compare
PFLU_RS18755 -2.0 -7.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS22070 -2.0 -1.9 phosphoribosylglycinamide formyltransferase compare
PFLU_RS02745 -2.0 -8.8 ABC transporter ATP-binding protein compare
PFLU_RS19165 -2.0 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS04660 -2.0 -6.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS27885 -2.0 -10.5 dimethylglycine demethylation protein DgcA compare
PFLU_RS26905 -2.0 -9.4 transcriptional regulator NrdR compare
PFLU_RS04395 -1.9 -6.2 ribosome-associated translation inhibitor RaiA compare
PFLU_RS18550 -1.9 -8.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS02735 -1.9 -12.6 high-affinity branched-chain amino acid ABC transporter permease LivM compare
PFLU_RS21425 -1.9 -3.5 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS27305 -1.9 -9.6 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS21215 -1.9 -1.9 YheU family protein compare
PFLU_RS28655 -1.9 -10.9 HAD family hydrolase compare
PFLU_RS08535 -1.8 -10.3 response regulator compare
PFLU_RS25800 -1.8 -5.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS02725 -1.8 -11.8 branched-chain amino acid ABC transporter substrate-binding protein compare
PFLU_RS09575 -1.8 -4.4 FadR family transcriptional regulator compare
PFLU_RS13715 -1.8 -1.4 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS08385 -1.8 -3.8 PilZ domain-containing protein compare
PFLU_RS28795 -1.8 -10.3 glutamine synthetase compare
PFLU_RS28850 -1.8 -13.2 OprD family porin compare
PFLU_RS01995 -1.8 -9.2 malate dehydrogenase compare
PFLU_RS03080 -1.8 -12.2 arginine decarboxylase compare
PFLU_RS27475 -1.7 -4.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS20515 -1.7 -4.7 amidophosphoribosyltransferase compare
PFLU_RS03540 -1.7 -4.2 type III secretion protein compare
PFLU_RS25730 -1.7 -7.5 PAS domain S-box protein compare
PFLU_RS01625 -1.7 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS03765 -1.7 -8.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS19160 -1.7 -8.2 endopeptidase La compare
PFLU_RS01525 -1.7 -11.2 ABC transporter permease compare
PFLU_RS13540 -1.7 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS18635 -1.7 -1.6 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS18655 -1.7 -1.1 NADH-quinone oxidoreductase subunit J compare
PFLU_RS26020 -1.7 -9.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS24095 -1.7 -1.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS00065 -1.7 -6.6 lysophospholipid acyltransferase compare
PFLU_RS19490 -1.7 -6.4 LacI family transcriptional regulator compare
PFLU_RS18670 -1.7 -1.1 NADH-quinone oxidoreductase subunit M compare
PFLU_RS14760 -1.7 -3.8 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS24475 -1.7 -14.0 AmpG family muropeptide MFS transporter compare
PFLU_RS20660 -1.6 -9.6 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS18625 -1.6 -2.4 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS22370 -1.6 -10.1 cadmium-translocating P-type ATPase compare
PFLU_RS22095 -1.6 -11.4 GTP diphosphokinase compare
PFLU_RS29990 -1.6 -3.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS30160 -1.6 -2.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS03970 -1.6 -7.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS04945 -1.6 -2.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS02730 -1.6 -11.0 branched-chain amino acid ABC transporter permease compare
PFLU_RS31100 -1.6 -3.2 preprotein translocase subunit SecG compare
PFLU_RS07640 -1.6 -7.8 universal stress protein compare
PFLU_RS18620 -1.5 -1.8 NADH-quinone oxidoreductase subunit B compare
PFLU_RS27895 -1.5 -7.6 membrane dipeptidase compare
PFLU_RS30165 -1.5 -6.9 ParA family protein compare
PFLU_RS26530 -1.5 -10.3 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS02740 -1.5 -7.5 ATP-binding cassette domain-containing protein compare
PFLU_RS04150 -1.5 -6.0 DUF1043 family protein compare
PFLU_RS24025 -1.5 -8.5 quinolinate synthase NadA compare
PFLU_RS09535 -1.5 -1.4 TIGR03750 family conjugal transfer protein compare
PFLU_RS09305 -1.5 -10.2 hypothetical protein compare
PFLU_RS04195 -1.5 -5.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS14430 -1.5 -2.2 arsenate reductase ArsC compare
PFLU_RS01530 -1.5 -6.0 ABC transporter permease compare
PFLU_RS00415 -1.5 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29275 -1.5 -5.3 DUF484 family protein compare
PFLU_RS01535 -1.5 -10.6 ABC transporter substrate-binding protein compare
PFLU_RS09055 -1.5 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS24085 -1.5 -2.5 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS28965 -1.5 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS08620 -1.4 -4.2 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS13150 -1.4 -2.8 hypothetical protein compare
PFLU_RS29760 -1.4 -7.7 phosphate ABC transporter permease PstA compare
PFLU_RS27445 -1.4 -10.4 phosphotransferase compare
PFLU_RS01880 -1.4 -7.7 twin-arginine translocase subunit TatC compare
PFLU_RS22895 -1.4 -11.6 PLP-dependent aminotransferase family protein compare
PFLU_RS18940 -1.4 -7.3 acyl-CoA dehydrogenase compare
PFLU_RS27865 -1.4 -7.8 glycine-betaine demethylase subunit GbcA compare
PFLU_RS08185 -1.4 -6.9 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS18885 -1.4 -1.6 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS24670 -1.4 -1.7 HigA family addiction module antidote protein compare
PFLU_RS03980 -1.4 -5.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS26735 -1.4 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS13895 -1.4 -1.4 helix-turn-helix transcriptional regulator compare
PFLU_RS08655 -1.4 -3.4 heme ABC transporter permease compare
PFLU_RS06310 -1.4 -4.6 sigma E protease regulator RseP compare
PFLU_RS04205 -1.4 -7.8 cytochrome c1 compare
PFLU_RS28690 -1.4 -8.8 FAD-binding oxidoreductase compare
PFLU_RS08660 -1.4 -3.0 heme exporter protein CcmD compare
PFLU_RS22380 -1.4 -5.1 sulfite exporter TauE/SafE family protein compare
PFLU_RS00365 -1.4 -5.8 zinc ABC transporter permease subunit ZnuB compare
PFLU_RS02565 -1.4 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS11620 -1.3 -7.2 FadR family transcriptional regulator compare
PFLU_RS21805 -1.3 -8.4 flagellar export chaperone FliS compare
PFLU_RS21635 -1.3 -4.8 flagellar motor protein compare
PFLU_RS06815 -1.3 -6.6 TetR family transcriptional regulator compare
PFLU_RS10430 -1.3 -3.1 peptidase compare
PFLU_RS24245 -1.3 -5.9 PilZ domain-containing protein compare
PFLU_RS22520 -1.3 -2.1 GntR family transcriptional regulator compare
PFLU_RS03770 -1.3 -8.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS00285 -1.3 -6.4 hypothetical protein compare
PFLU_RS21060 -1.3 -2.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS28270 -1.3 -2.5 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS16580 -1.3 -2.7 hypothetical protein compare
PFLU_RS01615 -1.3 -3.1 DUF2164 domain-containing protein compare
PFLU_RS25740 -1.3 -3.8 polynucleotide adenylyltransferase PcnB compare
PFLU_RS16665 -1.3 -3.6 cysteine hydrolase compare
PFLU_RS29340 -1.3 -5.7 bifunctional diguanylate cyclase/phosphodiesterase compare
PFLU_RS23130 -1.3 -4.7 response regulator transcription factor compare
PFLU_RS08445 -1.3 -5.3 MarR family transcriptional regulator compare


Specific Phenotypes

For 40 genes in this experiment

For carbon source L-Ornithine in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Ornithine across organisms