Experiment set27S423 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Carnitine hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS18735 -4.0 -1.2 hypothetical protein compare
PFLU_RS26290 -3.9 -0.8 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS16390 -3.6 -1.1 DUF411 domain-containing protein compare
PFLU_RS30630 -3.5 -1.0 hypothetical protein compare
PFLU_RS14995 -3.5 -1.4 response regulator transcription factor compare
PFLU_RS23920 -3.4 -1.6 septation protein A compare
PFLU_RS15795 -3.3 -1.6 hypothetical protein compare
PFLU_RS18055 -3.3 -1.6 hydrolase compare
PFLU_RS03075 -3.1 -1.3 translation initiation factor Sui1 compare
PFLU_RS20970 -3.1 -0.9 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS13750 -3.1 -1.5 hypothetical protein compare
PFLU_RS05380 -3.1 -4.5 group 1 truncated hemoglobin compare
PFLU_RS14805 -3.0 -1.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS29255 -3.0 -3.6 iron donor protein CyaY compare
PFLU_RS09190 -3.0 -1.8 hypothetical protein compare
PFLU_RS13975 -3.0 -2.0 hypothetical protein compare
PFLU_RS08485 -3.0 -2.3 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS10995 -2.9 -3.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS04945 -2.9 -3.0 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS13665 -2.9 -0.8 MarR family transcriptional regulator compare
PFLU_RS21240 -2.8 -1.4 hypothetical protein compare
PFLU_RS31530 -2.8 -0.8 transposase compare
PFLU_RS11380 -2.8 -1.0 sarcosine oxidase subunit delta compare
PFLU_RS01910 -2.8 -1.3 sterol-binding protein compare
PFLU_RS02790 -2.7 -1.5 TetR family transcriptional regulator compare
PFLU_RS02775 -2.7 -1.1 urease accessory protein UreF compare
PFLU_RS08505 -2.7 -6.2 protease HtpX compare
PFLU_RS31755 -2.7 -1.1 hypothetical protein compare
PFLU_RS14020 -2.7 -3.6 hypothetical protein compare
PFLU_RS06855 -2.6 -1.9 helix-turn-helix transcriptional regulator compare
PFLU_RS07685 -2.6 -3.7 transcriptional repressor LexA compare
PFLU_RS30730 -2.5 -2.1 helix-turn-helix domain-containing protein compare
PFLU_RS31310 -2.5 -1.7 phage tail protein compare
PFLU_RS22470 -2.5 -2.1 hypothetical protein compare
PFLU_RS07520 -2.5 -1.0 hypothetical protein compare
PFLU_RS13765 -2.5 -1.3 hypothetical protein compare
PFLU_RS12975 -2.5 -4.6 DUF934 domain-containing protein compare
PFLU_RS30770 -2.4 -2.6 thioredoxin family protein compare
PFLU_RS13640 -2.4 -2.4 isochorismatase family protein compare
PFLU_RS14450 -2.4 -2.0 AzlD domain-containing protein compare
PFLU_RS27805 -2.4 -2.7 sarcosine oxidase subunit gamma family protein compare
PFLU_RS17195 -2.4 -2.8 acyl dehydratase compare
PFLU_RS15205 -2.4 -2.3 ribose ABC transporter permease compare
PFLU_RS17265 -2.4 -1.6 hypothetical protein compare
PFLU_RS09535 -2.3 -1.0 TIGR03750 family conjugal transfer protein compare
PFLU_RS09670 -2.3 -1.8 integrating conjugative element protein compare
PFLU_RS13760 -2.3 -2.2 hypothetical protein compare
PFLU_RS07540 -2.3 -1.7 class II glutamine amidotransferase compare
PFLU_RS20540 -2.2 -10.0 phosphoribosylanthranilate isomerase compare
PFLU_RS27910 -2.2 -1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS30470 -2.2 -2.0 addiction module antidote protein compare
PFLU_RS28645 -2.2 -13.5 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22835 -2.2 -8.0 amidotransferase compare
PFLU_RS12980 -2.2 -7.5 nitrite/sulfite reductase compare
PFLU_RS14820 -2.2 -2.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS01665 -2.1 -2.6 glutaredoxin 3 compare
PFLU_RS04465 -2.1 -8.7 ATP phosphoribosyltransferase compare
PFLU_RS25360 -2.1 -7.7 glutamate 5-kinase compare
PFLU_RS30660 -2.1 -2.5 histidine phosphatase family protein compare
PFLU_RS18940 -2.1 -8.5 acyl-CoA dehydrogenase compare
PFLU_RS17500 -2.1 -4.1 hypothetical protein compare
PFLU_RS22740 -2.1 -3.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS20335 -2.1 -1.9 hypothetical protein compare
PFLU_RS15310 -2.1 -1.8 YgdI/YgdR family lipoprotein compare
PFLU_RS18505 -2.1 -6.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS31800 -2.1 -1.7 hypothetical protein compare
PFLU_RS25640 -2.1 -12.0 ketol-acid reductoisomerase compare
PFLU_RS05965 -2.1 -1.2 hypothetical protein compare
PFLU_RS22250 -2.1 -2.1 hypothetical protein compare
PFLU_RS24590 -2.1 -2.8 cytochrome c assembly protein compare
PFLU_RS20580 -2.1 -10.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS07650 -2.0 -11.9 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS05020 -2.0 -1.2 DUF1120 domain-containing protein compare
PFLU_RS06710 -2.0 -5.1 hypothetical protein compare
PFLU_RS14125 -2.0 -2.8 lysozyme compare
PFLU_RS31780 -2.0 -1.7 hypothetical protein compare
PFLU_RS04740 -2.0 -3.6 hypothetical protein compare
PFLU_RS08575 -2.0 -1.7 hypothetical protein compare
PFLU_RS13945 -1.9 -1.6 hypothetical protein compare
PFLU_RS24765 -1.9 -14.9 2-isopropylmalate synthase compare
PFLU_RS28535 -1.9 -12.7 dihydroxy-acid dehydratase compare
PFLU_RS10585 -1.9 -4.7 CoA transferase subunit A compare
PFLU_RS20565 -1.9 -11.7 3-isopropylmalate dehydrogenase compare
PFLU_RS18530 -1.9 -3.9 DNA translocase FtsK compare
PFLU_RS04835 -1.9 -0.9 hypothetical protein compare
PFLU_RS10575 -1.9 -8.6 acetyl-CoA C-acetyltransferase compare
PFLU_RS30790 -1.9 -1.4 hypothetical protein compare
PFLU_RS15575 -1.9 -2.9 fumarylacetoacetate hydrolase family protein compare
PFLU_RS13215 -1.9 -2.5 LysR family transcriptional regulator compare
PFLU_RS23895 -1.9 -1.7 DUF1289 domain-containing protein compare
PFLU_RS17295 -1.9 -3.2 type VI secretion system contractile sheath small subunit compare
PFLU_RS17545 -1.9 -0.8 DUF465 domain-containing protein compare
PFLU_RS23305 -1.9 -8.8 arginine N-succinyltransferase compare
PFLU_RS28390 -1.9 -8.5 methionine biosynthesis protein MetW compare
PFLU_RS05225 -1.8 -3.3 hypothetical protein compare
PFLU_RS27970 -1.8 -8.3 choline ABC transporter permease subunit compare
PFLU_RS27860 -1.8 -7.0 glycine-betaine demethylase subunit GbcB compare
PFLU_RS02365 -1.8 -9.1 glycosyltransferase compare
PFLU_RS18425 -1.8 -5.1 META domain-containing protein compare
PFLU_RS08650 -1.8 -1.9 heme exporter protein CcmB compare
PFLU_RS25925 -1.8 -2.1 RnfH family protein compare
PFLU_RS20510 -1.8 -10.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS15785 -1.8 -2.0 type II secretion system protein GspH compare
PFLU_RS03970 -1.8 -8.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS02590 -1.8 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS15990 -1.8 -1.2 SDR family oxidoreductase compare
PFLU_RS07225 -1.8 -11.8 L-aspartate oxidase compare
PFLU_RS27965 -1.8 -9.7 choline ABC transporter substrate-binding protein compare
PFLU_RS19740 -1.8 -4.1 NAD-dependent succinate-semialdehyde dehydrogenase compare
PFLU_RS02980 -1.8 -1.1 precorrin-8X methylmutase compare
PFLU_RS21425 -1.8 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS00850 -1.8 -2.6 hypothetical protein compare
PFLU_RS20330 -1.8 -2.4 cold-shock protein compare
PFLU_RS18675 -1.8 -1.7 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS29515 -1.8 -9.5 RidA family protein compare
PFLU_RS16580 -1.8 -2.4 hypothetical protein compare
PFLU_RS03665 -1.8 -4.5 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS31710 -1.8 -1.5 hypothetical protein compare
PFLU_RS29880 -1.7 -11.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS21965 -1.7 -10.7 transporter compare
PFLU_RS27885 -1.7 -9.9 dimethylglycine demethylation protein DgcA compare
PFLU_RS28165 -1.7 -10.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS11680 -1.7 -2.4 G/U mismatch-specific DNA glycosylase compare
PFLU_RS27810 -1.7 -12.0 sarcosine oxidase subunit alpha compare
PFLU_RS19175 -1.7 -5.8 trigger factor compare
PFLU_RS20575 -1.7 -4.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS18705 -1.7 -2.1 hypothetical protein compare
PFLU_RS04565 -1.7 -1.0 TMEM165/GDT1 family protein compare
PFLU_RS27880 -1.7 -7.3 dimethylglycine demethylation protein DgcB compare
PFLU_RS05500 -1.7 -2.6 HigA family addiction module antidote protein compare
PFLU_RS31440 -1.7 -1.3 hypothetical protein compare
PFLU_RS15275 -1.7 -1.7 hypothetical protein compare
PFLU_RS23310 -1.7 -7.0 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS27865 -1.7 -9.1 glycine-betaine demethylase subunit GbcA compare
PFLU_RS18020 -1.7 -3.0 protein TolR compare
PFLU_RS24025 -1.7 -9.3 quinolinate synthase NadA compare
PFLU_RS10580 -1.7 -7.1 CoA transferase subunit B conserved
PFLU_RS03240 -1.7 -10.2 copper-translocating P-type ATPase compare
PFLU_RS18665 -1.7 -1.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS27630 -1.7 -5.3 dethiobiotin synthase compare
PFLU_RS18700 -1.7 -1.4 hypothetical protein compare
PFLU_RS15005 -1.7 -1.0 hypothetical protein compare
PFLU_RS27370 -1.7 -9.3 anthranilate phosphoribosyltransferase compare
PFLU_RS29875 -1.7 -12.0 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01620 -1.7 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29095 -1.7 -14.3 polyphosphate kinase 1 compare
PFLU_RS27815 -1.7 -5.2 sarcosine oxidase subunit delta compare
PFLU_RS28385 -1.7 -10.0 homoserine O-acetyltransferase compare
PFLU_RS23040 -1.7 -7.5 aminodeoxychorismate lyase compare
PFLU_RS16300 -1.7 -2.7 hypothetical protein compare
PFLU_RS27875 -1.7 -9.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS17390 -1.7 -2.3 DUF4880 domain-containing protein compare
PFLU_RS29045 -1.7 -2.8 FadR family transcriptional regulator compare
PFLU_RS17380 -1.6 -3.5 DUF924 family protein compare
PFLU_RS25715 -1.6 -7.8 RNA polymerase-binding protein DksA compare
PFLU_RS27820 -1.6 -9.8 sarcosine oxidase subunit beta compare
PFLU_RS27945 -1.6 -6.4 4-hydroxybenzoyl-CoA thioesterase conserved
PFLU_RS19550 -1.6 -0.6 ABC transporter ATP-binding protein compare
PFLU_RS14320 -1.6 -1.3 DUF2946 domain-containing protein compare
PFLU_RS28820 -1.6 -1.3 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS29885 -1.6 -8.9 LysR family transcriptional regulator compare
PFLU_RS27895 -1.6 -8.1 membrane dipeptidase compare
PFLU_RS08625 -1.6 -3.2 molybdenum cofactor biosynthesis protein B compare
PFLU_RS00775 -1.6 -3.6 hypothetical protein compare
PFLU_RS26710 -1.6 -3.7 MaoC family dehydratase compare
PFLU_RS31840 -1.6 -0.7 hypothetical protein compare
PFLU_RS01605 -1.6 -6.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27870 -1.6 -10.6 electron transfer flavoprotein subunit beta compare
PFLU_RS04220 -1.6 -6.9 FadR family transcriptional regulator compare
PFLU_RS22715 -1.6 -10.4 aminodeoxychorismate synthase component I compare
PFLU_RS11545 -1.6 -2.8 amino acid synthesis family protein compare
PFLU_RS27620 -1.6 -11.0 acyl-CoA dehydrogenase compare
PFLU_RS09430 -1.6 -4.4 IS66 family insertion sequence element accessory protein TnpB compare
PFLU_RS21740 -1.6 -5.6 Hpt domain-containing protein compare
PFLU_RS21915 -1.6 -3.8 MarR family transcriptional regulator compare
PFLU_RS15195 -1.6 -3.1 LacI family transcriptional regulator compare
PFLU_RS27365 -1.6 -7.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20345 -1.6 -3.0 hypothetical protein compare
PFLU_RS04470 -1.6 -8.9 histidinol dehydrogenase compare
PFLU_RS23220 -1.6 -2.9 tRNA-Arg compare
PFLU_RS02690 -1.6 -1.1 hypothetical protein compare
PFLU_RS10355 -1.6 -2.0 DeoR family transcriptional regulator compare
PFLU_RS10765 -1.6 -6.1 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS22095 -1.6 -10.3 GTP diphosphokinase compare
PFLU_RS28655 -1.6 -9.8 HAD family hydrolase compare
PFLU_RS15810 -1.6 -1.9 hypothetical protein compare
PFLU_RS01610 -1.6 -8.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS27825 -1.6 -9.2 serine hydroxymethyltransferase compare
PFLU_RS04455 -1.5 -4.0 BolA family transcriptional regulator compare
PFLU_RS13150 -1.5 -1.9 hypothetical protein compare
PFLU_RS28650 -1.5 -4.3 RNA pyrophosphohydrolase compare
PFLU_RS27940 -1.5 -8.1 L-carnitine dehydrogenase conserved
PFLU_RS14300 -1.5 -1.3 response regulator transcription factor compare
PFLU_RS23680 -1.5 -8.9 long-chain fatty acid--CoA ligase compare
PFLU_RS19165 -1.5 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS25645 -1.5 -1.7 acetolactate synthase small subunit compare
PFLU_RS18600 -1.5 -3.3 GNAT family N-acetyltransferase compare
PFLU_RS27645 -1.5 -9.4 8-amino-7-oxononanoate synthase compare
PFLU_RS00550 -1.5 -4.8 NAD(P) transhydrogenase subunit alpha compare
PFLU_RS21575 -1.5 -1.5 pyrimidine/purine nucleoside phosphorylase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source L-Carnitine hydrochloride in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Carnitine hydrochloride across organisms