Experiment set27S420 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Choline chloride carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27805 -4.1 -3.9 sarcosine oxidase subunit gamma family protein compare
PFLU_RS27975 -4.0 -6.1 choline ABC transporter ATP-binding protein compare
PFLU_RS25360 -4.0 -7.7 glutamate 5-kinase compare
PFLU_RS08165 -4.0 -2.7 acyl carrier protein compare
PFLU_RS27370 -3.9 -13.7 anthranilate phosphoribosyltransferase compare
PFLU_RS27895 -3.9 -12.8 membrane dipeptidase compare
PFLU_RS27865 -3.9 -14.0 glycine-betaine demethylase subunit GbcA compare
PFLU_RS03240 -3.9 -16.7 copper-translocating P-type ATPase compare
PFLU_RS20575 -3.9 -6.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27870 -3.8 -16.3 electron transfer flavoprotein subunit beta compare
PFLU_RS27860 -3.8 -9.8 glycine-betaine demethylase subunit GbcB compare
PFLU_RS12975 -3.8 -5.2 DUF934 domain-containing protein compare
PFLU_RS28645 -3.8 -17.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28535 -3.7 -17.0 dihydroxy-acid dehydratase compare
PFLU_RS27365 -3.7 -11.2 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS27890 -3.7 -11.0 hypothetical protein compare
PFLU_RS01605 -3.6 -7.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20565 -3.6 -15.5 3-isopropylmalate dehydrogenase compare
PFLU_RS01610 -3.6 -8.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28385 -3.6 -15.0 homoserine O-acetyltransferase compare
PFLU_RS01620 -3.6 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25640 -3.5 -14.3 ketol-acid reductoisomerase compare
PFLU_RS27810 -3.5 -17.7 sarcosine oxidase subunit alpha compare
PFLU_RS20540 -3.5 -10.6 phosphoribosylanthranilate isomerase compare
PFLU_RS27885 -3.4 -14.5 dimethylglycine demethylation protein DgcA compare
PFLU_RS27815 -3.4 -7.9 sarcosine oxidase subunit delta compare
PFLU_RS22835 -3.4 -9.4 amidotransferase compare
PFLU_RS20510 -3.3 -14.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS27970 -3.3 -10.7 choline ABC transporter permease subunit compare
PFLU_RS28390 -3.3 -11.8 methionine biosynthesis protein MetW compare
PFLU_RS20580 -3.3 -13.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS22095 -3.2 -17.1 GTP diphosphokinase compare
PFLU_RS27820 -3.2 -13.2 sarcosine oxidase subunit beta compare
PFLU_RS27875 -3.2 -11.9 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS02590 -3.2 -9.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS08650 -3.2 -3.0 heme exporter protein CcmB compare
PFLU_RS24765 -3.1 -20.7 2-isopropylmalate synthase compare
PFLU_RS18505 -3.1 -8.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS27990 -3.1 -8.8 betaine-aldehyde dehydrogenase conserved
PFLU_RS27980 -3.1 -15.5 BCCT family transporter compare
PFLU_RS12980 -3.1 -8.1 nitrite/sulfite reductase compare
PFLU_RS04465 -3.1 -11.1 ATP phosphoribosyltransferase compare
PFLU_RS29095 -3.0 -22.0 polyphosphate kinase 1 compare
PFLU_RS29515 -3.0 -13.4 RidA family protein compare
PFLU_RS22740 -3.0 -2.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS00175 -3.0 -8.4 tryptophan synthase subunit alpha compare
PFLU_RS27965 -2.9 -13.8 choline ABC transporter substrate-binding protein compare
PFLU_RS27825 -2.9 -13.4 serine hydroxymethyltransferase compare
PFLU_RS27995 -2.9 -15.1 choline dehydrogenase conserved
PFLU_RS28655 -2.9 -13.1 HAD family hydrolase compare
PFLU_RS28165 -2.9 -12.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS03235 -2.8 -7.9 Cu(I)-responsive transcriptional regulator compare
PFLU_RS25715 -2.8 -9.0 RNA polymerase-binding protein DksA compare
PFLU_RS27985 -2.8 -7.8 transcriptional regulator BetI conserved
PFLU_RS27880 -2.8 -9.6 dimethylglycine demethylation protein DgcB compare
PFLU_RS18530 -2.8 -4.8 DNA translocase FtsK compare
PFLU_RS08670 -2.8 -8.2 heme lyase CcmF/NrfE family subunit compare
PFLU_RS04470 -2.6 -12.0 histidinol dehydrogenase compare
PFLU_RS13010 -2.6 -3.5 Fe-S biogenesis protein NfuA compare
PFLU_RS27955 -2.5 -7.5 GlxA family transcriptional regulator compare
PFLU_RS01900 -2.5 -7.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS17545 -2.5 -2.0 DUF465 domain-containing protein compare
PFLU_RS23380 -2.5 -1.7 HAD-IB family hydrolase compare
PFLU_RS26890 -2.5 -9.0 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS03970 -2.5 -10.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS00180 -2.5 -8.0 tryptophan synthase subunit beta compare
PFLU_RS15410 -2.4 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS01625 -2.4 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS29875 -2.4 -14.3 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS22105 -2.4 -3.2 cysteine synthase CysM compare
PFLU_RS24825 -2.4 -4.0 Fe-S cluster assembly protein IscX compare
PFLU_RS01895 -2.4 -7.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS08625 -2.4 -4.6 molybdenum cofactor biosynthesis protein B compare
PFLU_RS24025 -2.4 -11.1 quinolinate synthase NadA compare
PFLU_RS21425 -2.4 -3.8 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS08675 -2.3 -5.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS20515 -2.3 -4.5 amidophosphoribosyltransferase compare
PFLU_RS28965 -2.3 -10.3 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS25645 -2.3 -2.7 acetolactate synthase small subunit compare
PFLU_RS29760 -2.3 -9.7 phosphate ABC transporter permease PstA compare
PFLU_RS08665 -2.3 -5.7 cytochrome c maturation protein CcmE compare
PFLU_RS29880 -2.2 -12.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS23310 -2.2 -9.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS01910 -2.2 -2.1 sterol-binding protein compare
PFLU_RS22725 -2.2 -3.5 transcriptional regulator compare
PFLU_RS18665 -2.2 -3.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS27475 -2.1 -3.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS07640 -2.1 -10.4 universal stress protein compare
PFLU_RS18675 -2.1 -2.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS08505 -2.1 -7.6 protease HtpX compare
PFLU_RS24085 -2.1 -2.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS04325 -2.1 -12.5 ribonuclease G compare
PFLU_RS27690 -2.1 -2.2 response regulator compare
PFLU_RS18635 -2.0 -1.4 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS09055 -2.0 -2.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23305 -2.0 -9.7 arginine N-succinyltransferase compare
PFLU_RS25750 -1.9 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS29885 -1.9 -9.0 LysR family transcriptional regulator compare
PFLU_RS08410 -1.9 -9.0 HTH-type transcriptional regulator CysB compare
PFLU_RS25730 -1.9 -8.3 PAS domain S-box protein compare
PFLU_RS20730 -1.9 -2.6 hypothetical protein compare
PFLU_RS07225 -1.9 -12.9 L-aspartate oxidase compare
PFLU_RS29755 -1.9 -11.4 phosphate ABC transporter ATP-binding protein compare
PFLU_RS18670 -1.9 -1.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS07645 -1.9 -4.1 hypothetical protein compare
PFLU_RS18940 -1.9 -9.0 acyl-CoA dehydrogenase compare
PFLU_RS29770 -1.9 -10.4 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS31800 -1.9 -1.6 hypothetical protein compare
PFLU_RS06855 -1.8 -3.1 helix-turn-helix transcriptional regulator compare
PFLU_RS18625 -1.8 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS24095 -1.8 -1.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS19175 -1.8 -6.7 trigger factor compare
PFLU_RS19165 -1.8 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS29550 -1.8 -7.6 ATP-dependent DNA helicase RecG compare
PFLU_RS29750 -1.8 -4.4 phosphate signaling complex protein PhoU compare
PFLU_RS15005 -1.8 -1.7 hypothetical protein compare
PFLU_RS13120 -1.7 -1.6 hypothetical protein compare
PFLU_RS18655 -1.7 -1.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS26565 -1.7 -2.2 rRNA maturation RNase YbeY compare
PFLU_RS18620 -1.7 -2.5 NADH-quinone oxidoreductase subunit B compare
PFLU_RS29255 -1.7 -3.1 iron donor protein CyaY compare
PFLU_RS31100 -1.7 -3.5 preprotein translocase subunit SecG compare
PFLU_RS23040 -1.7 -8.3 aminodeoxychorismate lyase compare
PFLU_RS01585 -1.7 -6.3 oxidative damage protection protein compare
PFLU_RS30345 -1.7 -1.8 DUF2559 family protein compare
PFLU_RS08655 -1.7 -3.7 heme ABC transporter permease compare
PFLU_RS13875 -1.7 -5.5 ImmA/IrrE family metallo-endopeptidase compare
PFLU_RS01965 -1.6 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS26905 -1.6 -8.8 transcriptional regulator NrdR compare
PFLU_RS13895 -1.6 -2.0 helix-turn-helix transcriptional regulator compare
PFLU_RS23390 -1.6 -2.6 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS03770 -1.6 -9.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS29765 -1.6 -12.1 ABC transporter permease subunit compare
PFLU_RS26250 -1.6 -11.1 ferredoxin--NADP reductase compare
PFLU_RS06815 -1.6 -7.3 TetR family transcriptional regulator compare
PFLU_RS23070 -1.6 -1.8 50S ribosomal protein L32 compare
PFLU_RS07910 -1.6 -1.9 type 1 fimbrial protein compare
PFLU_RS29490 -1.6 -6.8 ribonuclease PH compare
PFLU_RS26635 -1.6 -4.2 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS08660 -1.6 -2.7 heme exporter protein CcmD compare
PFLU_RS23240 -1.6 -7.9 magnesium transporter compare
PFLU_RS03765 -1.5 -8.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS02180 -1.5 -1.5 thioredoxin TrxC compare
PFLU_RS23100 -1.5 -4.2 ribonuclease E compare
PFLU_RS18640 -1.5 -1.7 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS19170 -1.5 -4.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS07255 -1.5 -4.3 sulfurtransferase TusA family protein compare
PFLU_RS13665 -1.5 -1.2 MarR family transcriptional regulator compare
PFLU_RS14810 -1.5 -1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS30165 -1.5 -6.9 ParA family protein compare
PFLU_RS14805 -1.5 -2.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS24125 -1.5 -1.4 cold-shock protein compare
PFLU_RS21665 -1.5 -4.3 MinD/ParA family protein compare
PFLU_RS07650 -1.5 -8.9 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS26020 -1.4 -9.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS02275 -1.4 -1.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS00530 -1.4 -2.0 DUF2388 domain-containing protein compare
PFLU_RS21060 -1.4 -3.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS25815 -1.4 -3.0 transcription termination/antitermination protein NusA compare
PFLU_RS13825 -1.4 -2.0 hypothetical protein compare
PFLU_RS24205 -1.4 -1.5 DNA binding protein compare
PFLU_RS04455 -1.4 -4.1 BolA family transcriptional regulator compare
PFLU_RS00065 -1.4 -6.4 lysophospholipid acyltransferase compare
PFLU_RS28310 -1.4 -1.3 response regulator compare
PFLU_RS09305 -1.3 -9.1 hypothetical protein compare
PFLU_RS18755 -1.3 -6.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS07275 -1.3 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS04015 -1.3 -2.5 1-phosphofructokinase compare
PFLU_RS00195 -1.3 -1.5 dodecin domain-containing protein compare
PFLU_RS26545 -1.3 -6.6 sel1 repeat family protein compare
PFLU_RS11325 -1.3 -3.6 helix-turn-helix domain-containing protein compare
PFLU_RS04315 -1.3 -2.9 rod shape-determining protein MreD compare
PFLU_RS21915 -1.3 -3.2 MarR family transcriptional regulator compare
PFLU_RS04930 -1.3 -7.5 PhoH family protein compare
PFLU_RS18735 -1.3 -1.5 hypothetical protein compare
PFLU_RS03665 -1.3 -4.3 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS25735 -1.3 -2.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS11525 -1.3 -3.4 GntR family transcriptional regulator compare
PFLU_RS14820 -1.3 -3.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS26735 -1.3 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS29735 -1.2 -7.4 HlyC/CorC family transporter compare
PFLU_RS13540 -1.2 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS05885 -1.2 -2.4 recombinase RecA compare
PFLU_RS21995 -1.2 -2.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS09540 -1.2 -3.1 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS30520 -1.2 -5.0 ketoacyl-ACP synthase III compare
PFLU_RS07810 -1.2 -8.6 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS26640 -1.2 -5.9 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS02565 -1.2 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS07695 -1.2 -2.3 beta-N-acetylhexosaminidase compare
PFLU_RS21300 -1.2 -3.0 cysteine hydrolase compare
PFLU_RS08160 -1.2 -5.1 sugar transferase compare
PFLU_RS03645 -1.2 -5.3 tetratricopeptide repeat protein compare
PFLU_RS04435 -1.2 -4.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS21360 -1.2 -1.2 MarR family transcriptional regulator compare
PFLU_RS01645 -1.2 -5.7 S41 family peptidase compare
PFLU_RS23065 -1.2 -6.4 phosphate acyltransferase PlsX compare
PFLU_RS01955 -1.2 -4.9 DUF971 domain-containing protein compare
PFLU_RS07970 -1.1 -8.3 LOG family protein compare
PFLU_RS30160 -1.1 -2.5 ParB/RepB/Spo0J family partition protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Choline chloride in Pseudomonas fluorescens SBW25-INTG

For carbon source Choline chloride across organisms