Experiment set27S419 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Choline chloride carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS18585 -4.9 -3.4 high frequency lysogenization protein HflD compare
PFLU_RS20575 -3.3 -7.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS30345 -3.2 -4.1 DUF2559 family protein compare
PFLU_RS25360 -3.2 -8.7 glutamate 5-kinase compare
PFLU_RS20510 -3.1 -14.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS26890 -3.0 -10.2 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS01605 -3.0 -8.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS03240 -2.9 -14.9 copper-translocating P-type ATPase compare
PFLU_RS27870 -2.9 -14.9 electron transfer flavoprotein subunit beta compare
PFLU_RS25645 -2.9 -2.0 acetolactate synthase small subunit compare
PFLU_RS00175 -2.9 -8.1 tryptophan synthase subunit alpha compare
PFLU_RS20540 -2.9 -11.8 phosphoribosylanthranilate isomerase compare
PFLU_RS25640 -2.9 -13.8 ketol-acid reductoisomerase compare
PFLU_RS20580 -2.9 -13.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS12980 -2.8 -8.7 nitrite/sulfite reductase compare
PFLU_RS12975 -2.8 -5.0 DUF934 domain-containing protein compare
PFLU_RS03235 -2.8 -5.8 Cu(I)-responsive transcriptional regulator compare
PFLU_RS20565 -2.8 -15.0 3-isopropylmalate dehydrogenase compare
PFLU_RS31530 -2.7 -1.5 transposase compare
PFLU_RS27810 -2.7 -16.0 sarcosine oxidase subunit alpha compare
PFLU_RS27895 -2.7 -10.1 membrane dipeptidase compare
PFLU_RS27805 -2.7 -3.3 sarcosine oxidase subunit gamma family protein compare
PFLU_RS27825 -2.7 -11.9 serine hydroxymethyltransferase compare
PFLU_RS27875 -2.6 -9.9 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS04470 -2.6 -11.4 histidinol dehydrogenase compare
PFLU_RS01625 -2.6 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS24765 -2.6 -17.5 2-isopropylmalate synthase compare
PFLU_RS28535 -2.6 -14.6 dihydroxy-acid dehydratase compare
PFLU_RS01900 -2.6 -7.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01620 -2.6 -8.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS27860 -2.5 -7.1 glycine-betaine demethylase subunit GbcB compare
PFLU_RS22835 -2.5 -9.3 amidotransferase compare
PFLU_RS27885 -2.5 -11.7 dimethylglycine demethylation protein DgcA compare
PFLU_RS27890 -2.5 -10.4 hypothetical protein compare
PFLU_RS22105 -2.4 -3.3 cysteine synthase CysM compare
PFLU_RS13010 -2.4 -3.6 Fe-S biogenesis protein NfuA compare
PFLU_RS29515 -2.4 -9.9 RidA family protein compare
PFLU_RS04465 -2.4 -8.3 ATP phosphoribosyltransferase compare
PFLU_RS27955 -2.4 -8.4 GlxA family transcriptional regulator compare
PFLU_RS28165 -2.4 -12.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS18505 -2.4 -9.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS21425 -2.4 -3.2 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS27820 -2.4 -11.7 sarcosine oxidase subunit beta compare
PFLU_RS15795 -2.4 -3.1 hypothetical protein compare
PFLU_RS27365 -2.4 -8.9 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS19170 -2.4 -4.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS27880 -2.3 -8.4 dimethylglycine demethylation protein DgcB compare
PFLU_RS29095 -2.3 -17.9 polyphosphate kinase 1 compare
PFLU_RS22095 -2.3 -15.8 GTP diphosphokinase compare
PFLU_RS27970 -2.3 -8.4 choline ABC transporter permease subunit compare
PFLU_RS27965 -2.3 -10.6 choline ABC transporter substrate-binding protein compare
PFLU_RS19935 -2.3 -2.9 type II secretion system protein GspF compare
PFLU_RS02590 -2.3 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28390 -2.2 -9.6 methionine biosynthesis protein MetW compare
PFLU_RS27370 -2.2 -10.4 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -2.2 -10.4 homoserine O-acetyltransferase compare
PFLU_RS27815 -2.2 -7.1 sarcosine oxidase subunit delta compare
PFLU_RS18675 -2.2 -2.1 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS20515 -2.2 -4.3 amidophosphoribosyltransferase compare
PFLU_RS24090 -2.2 -2.1 Holliday junction branch migration protein RuvA compare
PFLU_RS27865 -2.2 -8.8 glycine-betaine demethylase subunit GbcA compare
PFLU_RS28645 -2.1 -11.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28655 -2.1 -11.8 HAD family hydrolase compare
PFLU_RS27980 -2.1 -10.9 BCCT family transporter compare
PFLU_RS24825 -2.1 -3.0 Fe-S cluster assembly protein IscX compare
PFLU_RS08650 -2.1 -2.8 heme exporter protein CcmB compare
PFLU_RS15310 -2.0 -2.7 YgdI/YgdR family lipoprotein compare
PFLU_RS09500 -2.0 -1.6 hypothetical protein compare
PFLU_RS23380 -2.0 -1.9 HAD-IB family hydrolase compare
PFLU_RS01610 -2.0 -10.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS27975 -2.0 -4.1 choline ABC transporter ATP-binding protein compare
PFLU_RS18635 -2.0 -1.4 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS24025 -2.0 -9.5 quinolinate synthase NadA compare
PFLU_RS29885 -2.0 -8.8 LysR family transcriptional regulator compare
PFLU_RS18530 -2.0 -4.3 DNA translocase FtsK compare
PFLU_RS29875 -2.0 -12.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS23220 -1.9 -4.5 tRNA-Arg compare
PFLU_RS25815 -1.9 -2.7 transcription termination/antitermination protein NusA compare
PFLU_RS29255 -1.9 -2.9 iron donor protein CyaY compare
PFLU_RS18665 -1.9 -2.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS21060 -1.9 -3.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS05340 -1.9 -2.8 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS29760 -1.9 -9.3 phosphate ABC transporter permease PstA compare
PFLU_RS04930 -1.9 -9.7 PhoH family protein compare
PFLU_RS22740 -1.9 -4.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS24095 -1.9 -1.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS18655 -1.9 -1.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS14550 -1.9 -6.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS15410 -1.9 -2.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS18670 -1.9 -1.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS31290 -1.8 -2.0 EamA family transporter compare
PFLU_RS13540 -1.8 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS00180 -1.8 -6.9 tryptophan synthase subunit beta compare
PFLU_RS03970 -1.8 -7.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS12145 -1.8 -2.4 nuclear transport factor 2 family protein compare
PFLU_RS23305 -1.8 -9.1 arginine N-succinyltransferase compare
PFLU_RS27985 -1.8 -5.6 transcriptional regulator BetI conserved
PFLU_RS30030 -1.8 -1.2 membrane protein compare
PFLU_RS27995 -1.8 -9.8 choline dehydrogenase conserved
PFLU_RS20955 -1.8 -3.0 DUF1028 domain-containing protein compare
PFLU_RS00530 -1.7 -2.2 DUF2388 domain-containing protein compare
PFLU_RS29755 -1.7 -9.1 phosphate ABC transporter ATP-binding protein compare
PFLU_RS25715 -1.7 -8.6 RNA polymerase-binding protein DksA compare
PFLU_RS23240 -1.7 -8.7 magnesium transporter compare
PFLU_RS18620 -1.7 -2.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS23040 -1.7 -7.7 aminodeoxychorismate lyase compare
PFLU_RS29880 -1.7 -9.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS05595 -1.7 -6.3 alpha/beta fold hydrolase compare
PFLU_RS27990 -1.7 -6.6 betaine-aldehyde dehydrogenase conserved
PFLU_RS18645 -1.6 -1.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS18625 -1.6 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS25730 -1.6 -8.4 PAS domain S-box protein compare
PFLU_RS29065 -1.6 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS08675 -1.6 -3.7 DsbE family thiol:disulfide interchange protein compare
PFLU_RS01965 -1.6 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS05750 -1.6 -1.3 methionine--tRNA ligase compare
PFLU_RS29750 -1.6 -5.3 phosphate signaling complex protein PhoU compare
PFLU_RS24085 -1.6 -2.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS06815 -1.6 -7.2 TetR family transcriptional regulator compare
PFLU_RS04455 -1.6 -4.4 BolA family transcriptional regulator compare
PFLU_RS04325 -1.6 -10.5 ribonuclease G compare
PFLU_RS07645 -1.6 -3.7 hypothetical protein compare
PFLU_RS26250 -1.6 -10.2 ferredoxin--NADP reductase compare
PFLU_RS00065 -1.5 -7.1 lysophospholipid acyltransferase compare
PFLU_RS13765 -1.5 -1.5 hypothetical protein compare
PFLU_RS16580 -1.5 -3.0 hypothetical protein compare
PFLU_RS08665 -1.5 -4.4 cytochrome c maturation protein CcmE compare
PFLU_RS24205 -1.5 -1.4 DNA binding protein compare
PFLU_RS19175 -1.5 -6.1 trigger factor compare
PFLU_RS28965 -1.5 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS08670 -1.5 -5.6 heme lyase CcmF/NrfE family subunit compare
PFLU_RS11525 -1.5 -3.8 GntR family transcriptional regulator compare
PFLU_RS21690 -1.5 -3.1 DNA-binding protein compare
PFLU_RS23310 -1.5 -7.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS08625 -1.5 -3.6 molybdenum cofactor biosynthesis protein B compare
PFLU_RS27475 -1.5 -4.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS07640 -1.4 -8.0 universal stress protein compare
PFLU_RS23070 -1.4 -1.1 50S ribosomal protein L32 compare
PFLU_RS08410 -1.4 -5.6 HTH-type transcriptional regulator CysB compare
PFLU_RS30165 -1.4 -6.7 ParA family protein compare
PFLU_RS15065 -1.4 -4.3 IclR family transcriptional regulator compare
PFLU_RS25750 -1.4 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS03765 -1.4 -6.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS05210 -1.4 -1.9 HU family DNA-binding protein compare
PFLU_RS07695 -1.4 -3.0 beta-N-acetylhexosaminidase compare
PFLU_RS18640 -1.4 -1.9 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS21665 -1.4 -4.3 MinD/ParA family protein compare
PFLU_RS01895 -1.3 -4.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS29550 -1.3 -6.3 ATP-dependent DNA helicase RecG compare
PFLU_RS07650 -1.3 -7.8 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25190 -1.3 -1.7 hypothetical protein compare
PFLU_RS04220 -1.3 -6.1 FadR family transcriptional regulator compare
PFLU_RS18940 -1.3 -6.7 acyl-CoA dehydrogenase compare
PFLU_RS26635 -1.3 -4.2 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS07520 -1.3 -1.4 hypothetical protein compare
PFLU_RS07225 -1.3 -8.0 L-aspartate oxidase compare
PFLU_RS21300 -1.3 -3.6 cysteine hydrolase compare
PFLU_RS24790 -1.3 -3.3 tetratricopeptide repeat protein compare
PFLU_RS12385 -1.3 -2.6 methyl-accepting chemotaxis protein compare
PFLU_RS27630 -1.3 -3.9 dethiobiotin synthase compare
PFLU_RS07685 -1.3 -3.2 transcriptional repressor LexA compare
PFLU_RS18735 -1.3 -1.7 hypothetical protein compare
PFLU_RS22600 -1.3 -1.8 RNA polymerase sigma factor SigX compare
PFLU_RS02355 -1.3 -4.4 GNAT family N-acetyltransferase compare
PFLU_RS03925 -1.3 -3.9 hypothetical protein compare
PFLU_RS29545 -1.3 -6.4 hydrogen peroxide-inducible genes activator compare
PFLU_RS17920 -1.3 -1.8 acyltransferase compare
PFLU_RS01285 -1.3 -1.4 HAMP domain-containing protein compare
PFLU_RS29770 -1.2 -6.7 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS09055 -1.2 -3.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS08165 -1.2 -1.4 acyl carrier protein compare
PFLU_RS24125 -1.2 -2.0 cold-shock protein compare
PFLU_RS22070 -1.2 -2.3 phosphoribosylglycinamide formyltransferase compare
PFLU_RS00190 -1.2 -1.3 DUF883 domain-containing protein compare
PFLU_RS01955 -1.2 -5.3 DUF971 domain-containing protein compare
PFLU_RS19550 -1.2 -1.0 ABC transporter ATP-binding protein compare
PFLU_RS08505 -1.2 -5.0 protease HtpX compare
PFLU_RS25225 -1.2 -5.2 disulfide bond formation protein B compare
PFLU_RS07910 -1.2 -2.1 type 1 fimbrial protein compare
PFLU_RS20715 -1.2 -1.3 iron ABC transporter permease compare
PFLU_RS27375 -1.2 -4.7 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS30160 -1.2 -1.9 ParB/RepB/Spo0J family partition protein compare
PFLU_RS15610 -1.2 -3.6 helix-turn-helix transcriptional regulator compare
PFLU_RS31590 -1.2 -1.1 hypothetical protein compare
PFLU_RS08160 -1.2 -5.3 sugar transferase compare
PFLU_RS09305 -1.2 -8.1 hypothetical protein compare
PFLU_RS07245 -1.2 -4.8 DegQ family serine endoprotease compare
PFLU_RS02565 -1.2 -3.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS19955 -1.1 -2.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS25735 -1.1 -2.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25800 -1.1 -4.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS03770 -1.1 -6.9 sulfate adenylyltransferase subunit CysN compare
PFLU_RS29735 -1.1 -5.9 HlyC/CorC family transporter compare
PFLU_RS03610 -1.1 -3.2 redox-regulated ATPase YchF compare
PFLU_RS22395 -1.1 -3.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS13875 -1.1 -3.5 ImmA/IrrE family metallo-endopeptidase compare
PFLU_RS05020 -1.1 -1.4 DUF1120 domain-containing protein compare
PFLU_RS24160 -1.1 -3.1 HAMP domain-containing protein compare
PFLU_RS04415 -1.1 -1.7 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS26570 -1.1 -3.6 HlyC/CorC family transporter compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Choline chloride in Pseudomonas fluorescens SBW25-INTG

For carbon source Choline chloride across organisms