Experiment set27S418 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Choline chloride carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27805 -4.2 -4.0 sarcosine oxidase subunit gamma family protein compare
PFLU_RS12975 -4.1 -4.8 DUF934 domain-containing protein compare
PFLU_RS03240 -3.8 -17.6 copper-translocating P-type ATPase compare
PFLU_RS00180 -3.7 -7.5 tryptophan synthase subunit beta compare
PFLU_RS20565 -3.6 -15.9 3-isopropylmalate dehydrogenase compare
PFLU_RS27820 -3.5 -13.6 sarcosine oxidase subunit beta compare
PFLU_RS27870 -3.5 -17.0 electron transfer flavoprotein subunit beta compare
PFLU_RS28385 -3.5 -15.3 homoserine O-acetyltransferase compare
PFLU_RS20510 -3.5 -15.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25640 -3.4 -15.3 ketol-acid reductoisomerase compare
PFLU_RS27815 -3.4 -8.5 sarcosine oxidase subunit delta compare
PFLU_RS20540 -3.3 -11.7 phosphoribosylanthranilate isomerase compare
PFLU_RS28390 -3.3 -12.7 methionine biosynthesis protein MetW compare
PFLU_RS27875 -3.3 -12.2 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS00175 -3.2 -8.0 tryptophan synthase subunit alpha compare
PFLU_RS27865 -3.2 -14.7 glycine-betaine demethylase subunit GbcA compare
PFLU_RS28535 -3.2 -17.6 dihydroxy-acid dehydratase compare
PFLU_RS20580 -3.2 -14.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27810 -3.1 -18.0 sarcosine oxidase subunit alpha compare
PFLU_RS27885 -3.0 -14.6 dimethylglycine demethylation protein DgcA compare
PFLU_RS27370 -3.0 -14.6 anthranilate phosphoribosyltransferase compare
PFLU_RS27970 -3.0 -11.0 choline ABC transporter permease subunit compare
PFLU_RS25645 -3.0 -2.1 acetolactate synthase small subunit compare
PFLU_RS22835 -3.0 -9.8 amidotransferase compare
PFLU_RS25715 -3.0 -8.9 RNA polymerase-binding protein DksA compare
PFLU_RS25360 -2.9 -9.1 glutamate 5-kinase compare
PFLU_RS27825 -2.9 -13.3 serine hydroxymethyltransferase compare
PFLU_RS27890 -2.9 -11.3 hypothetical protein compare
PFLU_RS08665 -2.9 -5.8 cytochrome c maturation protein CcmE compare
PFLU_RS29095 -2.9 -21.2 polyphosphate kinase 1 compare
PFLU_RS04470 -2.9 -12.2 histidinol dehydrogenase compare
PFLU_RS03235 -2.9 -7.1 Cu(I)-responsive transcriptional regulator compare
PFLU_RS24765 -2.9 -19.4 2-isopropylmalate synthase compare
PFLU_RS27860 -2.8 -10.3 glycine-betaine demethylase subunit GbcB compare
PFLU_RS27955 -2.8 -8.7 GlxA family transcriptional regulator compare
PFLU_RS29515 -2.8 -13.2 RidA family protein compare
PFLU_RS01620 -2.8 -9.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS12980 -2.8 -9.2 nitrite/sulfite reductase compare
PFLU_RS27965 -2.8 -13.8 choline ABC transporter substrate-binding protein compare
PFLU_RS29760 -2.7 -9.6 phosphate ABC transporter permease PstA compare
PFLU_RS27895 -2.7 -12.2 membrane dipeptidase compare
PFLU_RS01605 -2.7 -8.2 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01610 -2.6 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS04465 -2.6 -9.9 ATP phosphoribosyltransferase compare
PFLU_RS28165 -2.6 -12.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS27880 -2.6 -8.7 dimethylglycine demethylation protein DgcB compare
PFLU_RS27365 -2.6 -9.8 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28645 -2.6 -14.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS02590 -2.5 -10.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS22095 -2.5 -16.5 GTP diphosphokinase compare
PFLU_RS20575 -2.4 -6.0 3-isopropylmalate dehydratase small subunit compare
PFLU_RS13010 -2.4 -3.9 Fe-S biogenesis protein NfuA compare
PFLU_RS03970 -2.4 -9.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS18505 -2.4 -8.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS15410 -2.4 -1.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS19170 -2.4 -4.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS29875 -2.3 -14.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS24025 -2.3 -10.3 quinolinate synthase NadA compare
PFLU_RS28655 -2.3 -12.8 HAD family hydrolase compare
PFLU_RS22740 -2.3 -3.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS01900 -2.3 -7.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20515 -2.3 -4.7 amidophosphoribosyltransferase compare
PFLU_RS31440 -2.3 -2.8 hypothetical protein compare
PFLU_RS21240 -2.2 -2.4 hypothetical protein compare
PFLU_RS26890 -2.2 -8.2 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS18675 -2.2 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS08655 -2.2 -5.1 heme ABC transporter permease compare
PFLU_RS27980 -2.2 -13.4 BCCT family transporter compare
PFLU_RS27995 -2.2 -13.2 choline dehydrogenase conserved
PFLU_RS04945 -2.2 -3.3 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS27990 -2.2 -8.6 betaine-aldehyde dehydrogenase conserved
PFLU_RS21060 -2.2 -4.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS29750 -2.1 -5.4 phosphate signaling complex protein PhoU compare
PFLU_RS27975 -2.1 -4.3 choline ABC transporter ATP-binding protein compare
PFLU_RS01895 -2.1 -6.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS27985 -2.1 -7.1 transcriptional regulator BetI conserved
PFLU_RS27475 -2.1 -4.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS29880 -2.1 -12.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25750 -2.0 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS23305 -2.0 -9.6 arginine N-succinyltransferase compare
PFLU_RS21425 -2.0 -4.2 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS18635 -2.0 -1.4 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS09500 -2.0 -1.3 hypothetical protein compare
PFLU_RS07255 -2.0 -4.8 sulfurtransferase TusA family protein compare
PFLU_RS23310 -2.0 -8.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS23040 -2.0 -8.3 aminodeoxychorismate lyase compare
PFLU_RS00530 -2.0 -3.2 DUF2388 domain-containing protein compare
PFLU_RS29885 -2.0 -10.6 LysR family transcriptional regulator compare
PFLU_RS08670 -1.9 -6.5 heme lyase CcmF/NrfE family subunit compare
PFLU_RS30345 -1.9 -3.0 DUF2559 family protein compare
PFLU_RS04325 -1.9 -12.2 ribonuclease G compare
PFLU_RS08660 -1.9 -3.7 heme exporter protein CcmD compare
PFLU_RS15795 -1.9 -1.9 hypothetical protein compare
PFLU_RS28965 -1.9 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS22105 -1.9 -3.7 cysteine synthase CysM compare
PFLU_RS18655 -1.9 -1.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS23380 -1.9 -2.1 HAD-IB family hydrolase compare
PFLU_RS13540 -1.9 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS09055 -1.9 -3.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS12650 -1.9 -3.4 hypothetical protein compare
PFLU_RS18670 -1.9 -1.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS10660 -1.9 -3.4 DUF1652 domain-containing protein compare
PFLU_RS07910 -1.8 -1.9 type 1 fimbrial protein compare
PFLU_RS26250 -1.8 -11.7 ferredoxin--NADP reductase compare
PFLU_RS04835 -1.8 -1.8 hypothetical protein compare
PFLU_RS21575 -1.8 -2.2 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS25730 -1.8 -8.9 PAS domain S-box protein compare
PFLU_RS18665 -1.8 -3.1 NADH-quinone oxidoreductase subunit L compare
PFLU_RS15745 -1.8 -2.9 type II secretion system ATPase GspE compare
PFLU_RS02670 -1.8 -4.5 hypothetical protein compare
PFLU_RS19175 -1.8 -6.6 trigger factor compare
PFLU_RS29255 -1.7 -3.1 iron donor protein CyaY compare
PFLU_RS07645 -1.7 -4.1 hypothetical protein compare
PFLU_RS18735 -1.7 -1.5 hypothetical protein compare
PFLU_RS29755 -1.7 -9.8 phosphate ABC transporter ATP-binding protein compare
PFLU_RS27375 -1.7 -6.6 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS18940 -1.7 -8.3 acyl-CoA dehydrogenase compare
PFLU_RS05655 -1.7 -3.9 DeoR/GlpR family transcriptional regulator compare
PFLU_RS01315 -1.7 -3.3 Hsp33 family molecular chaperone HslO compare
PFLU_RS21300 -1.7 -4.6 cysteine hydrolase compare
PFLU_RS07225 -1.7 -11.3 L-aspartate oxidase compare
PFLU_RS01965 -1.7 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS26635 -1.7 -4.1 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS18625 -1.7 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS18645 -1.7 -1.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS04455 -1.7 -5.1 BolA family transcriptional regulator compare
PFLU_RS00415 -1.6 -2.1 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS30160 -1.6 -3.0 ParB/RepB/Spo0J family partition protein compare
PFLU_RS24670 -1.6 -2.3 HigA family addiction module antidote protein compare
PFLU_RS29765 -1.6 -12.2 ABC transporter permease subunit compare
PFLU_RS02410 -1.6 -3.5 multidrug efflux SMR transporter compare
PFLU_RS01585 -1.6 -5.4 oxidative damage protection protein compare
PFLU_RS18620 -1.6 -2.9 NADH-quinone oxidoreductase subunit B compare
PFLU_RS03665 -1.5 -4.8 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS02565 -1.5 -3.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS31590 -1.5 -1.7 hypothetical protein compare
PFLU_RS06815 -1.5 -6.4 TetR family transcriptional regulator compare
PFLU_RS08410 -1.4 -6.3 HTH-type transcriptional regulator CysB compare
PFLU_RS19165 -1.4 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS24085 -1.4 -3.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS23100 -1.4 -4.0 ribonuclease E compare
PFLU_RS02275 -1.4 -1.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS28310 -1.4 -1.6 response regulator compare
PFLU_RS04930 -1.4 -8.4 PhoH family protein compare
PFLU_RS24825 -1.4 -2.2 Fe-S cluster assembly protein IscX compare
PFLU_RS23240 -1.4 -7.8 magnesium transporter compare
PFLU_RS21665 -1.4 -4.4 MinD/ParA family protein compare
PFLU_RS14440 -1.4 -1.1 hypothetical protein compare
PFLU_RS08675 -1.4 -3.1 DsbE family thiol:disulfide interchange protein compare
PFLU_RS23920 -1.4 -1.4 septation protein A compare
PFLU_RS24205 -1.4 -1.6 DNA binding protein compare
PFLU_RS29505 -1.4 -3.8 DNA-directed RNA polymerase subunit omega compare
PFLU_RS31615 -1.4 -3.6 hypothetical protein compare
PFLU_RS07970 -1.4 -8.9 LOG family protein compare
PFLU_RS29550 -1.4 -6.4 ATP-dependent DNA helicase RecG compare
PFLU_RS08650 -1.4 -2.4 heme exporter protein CcmB compare
PFLU_RS01625 -1.3 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS07640 -1.3 -7.1 universal stress protein compare
PFLU_RS19665 -1.3 -1.5 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS20845 -1.3 -1.9 hypothetical protein compare
PFLU_RS18530 -1.3 -3.6 DNA translocase FtsK compare
PFLU_RS10405 -1.3 -2.3 helix-turn-helix transcriptional regulator compare
PFLU_RS12635 -1.3 -2.6 conjugal transfer protein TraR compare
PFLU_RS05595 -1.3 -5.3 alpha/beta fold hydrolase compare
PFLU_RS07650 -1.3 -7.8 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS11525 -1.3 -2.9 GntR family transcriptional regulator compare
PFLU_RS26640 -1.3 -6.2 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS26545 -1.3 -6.3 sel1 repeat family protein compare
PFLU_RS26735 -1.3 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS08505 -1.3 -5.2 protease HtpX compare
PFLU_RS07665 -1.3 -2.6 type I DNA topoisomerase compare
PFLU_RS12660 -1.3 -4.6 hypothetical protein compare
PFLU_RS29770 -1.3 -7.6 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS20290 -1.3 -1.8 integration host factor subunit alpha compare
PFLU_RS17750 -1.2 -1.8 pirin family protein compare
PFLU_RS08165 -1.2 -1.3 acyl carrier protein compare
PFLU_RS24090 -1.2 -3.1 Holliday junction branch migration protein RuvA compare
PFLU_RS04385 -1.2 -6.2 RNase adapter RapZ compare
PFLU_RS24695 -1.2 -1.7 PTS glucose transporter subunit IIB compare
PFLU_RS31800 -1.2 -2.3 hypothetical protein compare
PFLU_RS23010 -1.2 -7.0 radical SAM protein compare
PFLU_RS23220 -1.2 -2.4 tRNA-Arg compare
PFLU_RS04220 -1.2 -5.9 FadR family transcriptional regulator compare
PFLU_RS20955 -1.2 -2.3 DUF1028 domain-containing protein compare
PFLU_RS25735 -1.2 -2.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS14810 -1.2 -1.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS26020 -1.2 -7.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS04195 -1.2 -4.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS03765 -1.2 -6.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01665 -1.2 -2.8 glutaredoxin 3 compare
PFLU_RS18640 -1.2 -1.3 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS07785 -1.2 -6.5 VacJ family lipoprotein compare
PFLU_RS21315 -1.2 -4.0 GTP cyclohydrolase I FolE compare
PFLU_RS25755 -1.2 -1.1 pantoate--beta-alanine ligase compare
PFLU_RS07810 -1.2 -8.3 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS13765 -1.1 -1.2 hypothetical protein compare
PFLU_RS07695 -1.1 -2.3 beta-N-acetylhexosaminidase compare
PFLU_RS01955 -1.1 -4.9 DUF971 domain-containing protein compare
PFLU_RS27440 -1.1 -4.7 nucleotidyltransferase family protein compare
PFLU_RS04430 -1.1 -5.0 ATP-binding cassette domain-containing protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Choline chloride in Pseudomonas fluorescens SBW25-INTG

For carbon source Choline chloride across organisms