Experiment set27S417 for Pseudomonas fluorescens SBW25-INTG

Compare to:

sn-glycero-3-phosphocholine carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27805 -4.9 -3.4 sarcosine oxidase subunit gamma family protein compare
PFLU_RS08675 -3.8 -4.5 DsbE family thiol:disulfide interchange protein compare
PFLU_RS01605 -3.6 -8.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27975 -3.5 -6.4 choline ABC transporter ATP-binding protein compare
PFLU_RS27810 -3.4 -19.0 sarcosine oxidase subunit alpha compare
PFLU_RS27365 -3.4 -11.9 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28535 -3.3 -18.3 dihydroxy-acid dehydratase compare
PFLU_RS27890 -3.3 -12.1 hypothetical protein compare
PFLU_RS27815 -3.3 -9.1 sarcosine oxidase subunit delta compare
PFLU_RS12975 -3.3 -5.3 DUF934 domain-containing protein compare
PFLU_RS02590 -3.2 -11.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27880 -3.2 -10.7 dimethylglycine demethylation protein DgcB compare
PFLU_RS20575 -3.2 -7.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27370 -3.2 -15.1 anthranilate phosphoribosyltransferase compare
PFLU_RS27860 -3.1 -10.3 glycine-betaine demethylase subunit GbcB compare
PFLU_RS28390 -3.1 -12.3 methionine biosynthesis protein MetW compare
PFLU_RS27885 -3.0 -14.4 dimethylglycine demethylation protein DgcA compare
PFLU_RS25640 -3.0 -15.4 ketol-acid reductoisomerase compare
PFLU_RS27870 -3.0 -15.6 electron transfer flavoprotein subunit beta compare
PFLU_RS27895 -3.0 -11.3 membrane dipeptidase compare
PFLU_RS01900 -2.9 -8.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS27995 -2.9 -16.3 choline dehydrogenase conserved
PFLU_RS20540 -2.9 -12.4 phosphoribosylanthranilate isomerase compare
PFLU_RS22835 -2.8 -10.1 amidotransferase compare
PFLU_RS00180 -2.8 -8.0 tryptophan synthase subunit beta compare
PFLU_RS20565 -2.8 -15.9 3-isopropylmalate dehydrogenase compare
PFLU_RS27865 -2.8 -12.1 glycine-betaine demethylase subunit GbcA compare
PFLU_RS08165 -2.8 -3.7 acyl carrier protein compare
PFLU_RS20580 -2.8 -13.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27970 -2.7 -8.5 choline ABC transporter permease subunit compare
PFLU_RS04465 -2.7 -9.5 ATP phosphoribosyltransferase compare
PFLU_RS03240 -2.7 -14.6 copper-translocating P-type ATPase compare
PFLU_RS24765 -2.7 -19.3 2-isopropylmalate synthase compare
PFLU_RS27820 -2.7 -13.5 sarcosine oxidase subunit beta compare
PFLU_RS04470 -2.7 -12.7 histidinol dehydrogenase compare
PFLU_RS08660 -2.7 -4.3 heme exporter protein CcmD compare
PFLU_RS00175 -2.7 -9.3 tryptophan synthase subunit alpha compare
PFLU_RS07665 -2.6 -2.5 type I DNA topoisomerase compare
PFLU_RS01620 -2.6 -9.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS27965 -2.6 -13.7 choline ABC transporter substrate-binding protein compare
PFLU_RS19170 -2.6 -4.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS28165 -2.6 -13.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08505 -2.6 -8.2 protease HtpX compare
PFLU_RS27825 -2.6 -13.3 serine hydroxymethyltransferase compare
PFLU_RS28385 -2.6 -13.6 homoserine O-acetyltransferase compare
PFLU_RS27875 -2.6 -11.7 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS18505 -2.6 -9.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS08670 -2.6 -8.8 heme lyase CcmF/NrfE family subunit compare
PFLU_RS25360 -2.5 -9.0 glutamate 5-kinase compare
PFLU_RS25715 -2.5 -10.3 RNA polymerase-binding protein DksA compare
PFLU_RS20515 -2.5 -4.4 amidophosphoribosyltransferase compare
PFLU_RS12980 -2.4 -9.5 nitrite/sulfite reductase compare
PFLU_RS15410 -2.4 -2.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS22105 -2.3 -3.5 cysteine synthase CysM compare
PFLU_RS08620 -2.3 -5.8 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS04150 -2.2 -9.8 DUF1043 family protein compare
PFLU_RS27990 -2.2 -8.9 betaine-aldehyde dehydrogenase conserved
PFLU_RS01610 -2.2 -11.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS08665 -2.2 -5.4 cytochrome c maturation protein CcmE compare
PFLU_RS03665 -2.2 -6.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS20510 -2.2 -11.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS18530 -2.2 -4.4 DNA translocase FtsK compare
PFLU_RS18665 -2.1 -3.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS18635 -2.1 -1.4 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS27955 -2.1 -6.7 GlxA family transcriptional regulator compare
PFLU_RS04945 -2.1 -3.7 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS29515 -2.1 -10.2 RidA family protein compare
PFLU_RS02365 -2.0 -11.6 glycosyltransferase compare
PFLU_RS28655 -2.0 -12.1 HAD family hydrolase compare
PFLU_RS24025 -2.0 -11.0 quinolinate synthase NadA compare
PFLU_RS04220 -2.0 -8.4 FadR family transcriptional regulator compare
PFLU_RS19015 -2.0 -8.7 anti-sigma factor compare
PFLU_RS18670 -2.0 -1.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS23470 -2.0 -9.8 glycerophosphoryl diester phosphodiesterase conserved
PFLU_RS29755 -2.0 -10.1 phosphate ABC transporter ATP-binding protein compare
PFLU_RS08655 -1.9 -4.6 heme ABC transporter permease compare
PFLU_RS03970 -1.9 -8.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS22740 -1.9 -4.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS10325 -1.9 -9.2 MFS transporter compare
PFLU_RS08160 -1.9 -7.0 sugar transferase compare
PFLU_RS08625 -1.9 -4.2 molybdenum cofactor biosynthesis protein B compare
PFLU_RS12580 -1.9 -8.4 MurR/RpiR family transcriptional regulator compare
PFLU_RS18655 -1.8 -1.7 NADH-quinone oxidoreductase subunit J compare
PFLU_RS02370 -1.8 -8.0 glycosyltransferase compare
PFLU_RS01625 -1.8 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS25800 -1.8 -6.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS28310 -1.8 -1.4 response regulator compare
PFLU_RS25730 -1.8 -9.1 PAS domain S-box protein compare
PFLU_RS29760 -1.8 -9.2 phosphate ABC transporter permease PstA compare
PFLU_RS07695 -1.8 -3.2 beta-N-acetylhexosaminidase compare
PFLU_RS18675 -1.8 -3.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS25750 -1.8 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS18940 -1.7 -8.8 acyl-CoA dehydrogenase compare
PFLU_RS25225 -1.7 -6.7 disulfide bond formation protein B compare
PFLU_RS08065 -1.7 -7.2 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS24825 -1.7 -3.9 Fe-S cluster assembly protein IscX compare
PFLU_RS29000 -1.7 -11.1 glycerol-3-phosphate transporter conserved
PFLU_RS08650 -1.7 -2.6 heme exporter protein CcmB compare
PFLU_RS29765 -1.7 -13.0 ABC transporter permease subunit compare
PFLU_RS14805 -1.7 -2.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS21425 -1.7 -4.0 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS22095 -1.7 -11.8 GTP diphosphokinase compare
PFLU_RS18625 -1.6 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS04330 -1.6 -12.1 TIGR02099 family protein compare
PFLU_RS14820 -1.6 -4.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS26640 -1.6 -7.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS29770 -1.6 -9.3 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS27440 -1.6 -5.6 nucleotidyltransferase family protein compare
PFLU_RS07245 -1.6 -7.3 DegQ family serine endoprotease compare
PFLU_RS24090 -1.6 -3.3 Holliday junction branch migration protein RuvA compare
PFLU_RS22395 -1.6 -5.2 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS13010 -1.6 -4.0 Fe-S biogenesis protein NfuA compare
PFLU_RS03770 -1.6 -9.5 sulfate adenylyltransferase subunit CysN compare
PFLU_RS27475 -1.6 -5.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS21665 -1.5 -5.0 MinD/ParA family protein compare
PFLU_RS23010 -1.5 -8.3 radical SAM protein compare
PFLU_RS31490 -1.5 -2.0 hypothetical protein compare
PFLU_RS15205 -1.5 -3.1 ribose ABC transporter permease compare
PFLU_RS03765 -1.5 -7.1 sulfate adenylyltransferase subunit CysD compare
PFLU_RS24085 -1.5 -4.0 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS00415 -1.5 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS12715 -1.5 -1.0 fumarylacetoacetate hydrolase family protein compare
PFLU_RS24095 -1.5 -1.9 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS06055 -1.5 -2.0 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS30345 -1.5 -2.0 DUF2559 family protein compare
PFLU_RS27030 -1.5 -8.6 bacterioferritin compare
PFLU_RS24790 -1.4 -4.6 tetratricopeptide repeat protein compare
PFLU_RS29560 -1.4 -1.7 hypothetical protein compare
PFLU_RS05965 -1.4 -1.7 hypothetical protein compare
PFLU_RS01360 -1.4 -8.9 FdhF/YdeP family oxidoreductase compare
PFLU_RS08410 -1.4 -7.6 HTH-type transcriptional regulator CysB compare
PFLU_RS05695 -1.4 -6.5 bacterioferritin compare
PFLU_RS14810 -1.4 -2.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS25735 -1.4 -1.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS04930 -1.4 -8.7 PhoH family protein compare
PFLU_RS20405 -1.4 -4.8 carbon storage regulator CsrA compare
PFLU_RS21740 -1.4 -4.7 Hpt domain-containing protein compare
PFLU_RS29750 -1.4 -4.2 phosphate signaling complex protein PhoU compare
PFLU_RS21360 -1.4 -1.9 MarR family transcriptional regulator compare
PFLU_RS05660 -1.4 -8.8 glycerol kinase GlpK compare
PFLU_RS30505 -1.4 -4.3 hypothetical protein compare
PFLU_RS00195 -1.4 -2.1 dodecin domain-containing protein compare
PFLU_RS13580 -1.3 -3.3 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS19165 -1.3 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS28965 -1.3 -6.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS09540 -1.3 -2.6 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS25815 -1.3 -1.3 transcription termination/antitermination protein NusA compare
PFLU_RS30525 -1.3 -7.0 SDR family oxidoreductase compare
PFLU_RS18755 -1.3 -5.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS02275 -1.3 -1.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS07215 -1.3 -4.4 hypothetical protein compare
PFLU_RS23815 -1.3 -9.8 GGDEF and EAL domain-containing protein compare
PFLU_RS30530 -1.3 -5.2 acetyltransferase compare
PFLU_RS08180 -1.3 -4.6 ketoacyl-ACP synthase III compare
PFLU_RS27795 -1.3 -6.2 formaldehyde dehydrogenase, glutathione-independent compare
PFLU_RS29875 -1.3 -9.2 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS10835 -1.3 -1.7 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS12145 -1.3 -2.2 nuclear transport factor 2 family protein compare
PFLU_RS26635 -1.3 -3.9 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS28285 -1.3 -2.4 hypothetical protein compare
PFLU_RS02355 -1.3 -4.5 GNAT family N-acetyltransferase compare
PFLU_RS26735 -1.2 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS04140 -1.2 -2.2 response regulator transcription factor compare
PFLU_RS02565 -1.2 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS04935 -1.2 -3.5 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS21900 -1.2 -3.1 hypothetical protein compare
PFLU_RS12660 -1.2 -4.5 hypothetical protein compare
PFLU_RS31215 -1.2 -2.2 hypothetical protein compare
PFLU_RS08190 -1.2 -9.5 polysaccharide biosynthesis protein compare
PFLU_RS02775 -1.2 -1.6 urease accessory protein UreF compare
PFLU_RS06815 -1.2 -6.4 TetR family transcriptional regulator compare
PFLU_RS23185 -1.2 -7.9 protein-glutamate O-methyltransferase CheR compare
PFLU_RS09305 -1.2 -8.6 hypothetical protein compare
PFLU_RS28035 -1.2 -8.2 transporter substrate-binding domain-containing protein compare
PFLU_RS30510 -1.2 -3.2 glycosyltransferase family 4 protein compare
PFLU_RS01895 -1.2 -3.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS16310 -1.2 -1.8 hypothetical protein compare
PFLU_RS21300 -1.2 -3.7 cysteine hydrolase compare
PFLU_RS26545 -1.2 -6.5 sel1 repeat family protein compare
PFLU_RS02765 -1.2 -1.8 HupE/UreJ family protein compare
PFLU_RS08630 -1.2 -4.3 molybdopterin molybdotransferase MoeA compare
PFLU_RS24980 -1.2 -2.5 purine-binding chemotaxis protein CheW compare
PFLU_RS20330 -1.2 -2.5 cold-shock protein compare
PFLU_RS13540 -1.2 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS29880 -1.2 -8.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS24590 -1.2 -2.3 cytochrome c assembly protein compare
PFLU_RS22605 -1.2 -5.5 mechanosensitive ion channel compare
PFLU_RS24255 -1.2 -5.9 pyruvate kinase compare
PFLU_RS25755 -1.2 -1.1 pantoate--beta-alanine ligase compare
PFLU_RS31530 -1.2 -1.0 transposase compare
PFLU_RS29090 -1.2 -5.6 exopolyphosphatase compare
PFLU_RS01095 -1.1 -3.1 ribbon-helix-helix protein, CopG family compare
PFLU_RS07225 -1.1 -8.4 L-aspartate oxidase compare
PFLU_RS26565 -1.1 -1.8 rRNA maturation RNase YbeY compare
PFLU_RS25955 -1.1 -1.9 hypothetical protein compare
PFLU_RS25790 -1.1 -4.3 polyribonucleotide nucleotidyltransferase compare
PFLU_RS20625 -1.1 -2.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS19175 -1.1 -5.2 trigger factor compare
PFLU_RS22360 -1.1 -8.8 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS27305 -1.1 -6.7 anhydro-N-acetylmuramic acid kinase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source sn-glycero-3-phosphocholine in Pseudomonas fluorescens SBW25-INTG

For carbon source sn-glycero-3-phosphocholine across organisms