Experiment set27S416 for Pseudomonas fluorescens SBW25-INTG

Compare to:

sn-glycero-3-phosphocholine carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27895 -3.9 -12.5 membrane dipeptidase compare
PFLU_RS08650 -3.7 -2.5 heme exporter protein CcmB compare
PFLU_RS15005 -3.4 -2.5 hypothetical protein compare
PFLU_RS28535 -3.4 -17.7 dihydroxy-acid dehydratase compare
PFLU_RS25640 -3.4 -14.6 ketol-acid reductoisomerase compare
PFLU_RS20575 -3.3 -6.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27875 -3.3 -12.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS01910 -3.3 -2.2 sterol-binding protein compare
PFLU_RS00180 -3.3 -8.1 tryptophan synthase subunit beta compare
PFLU_RS20580 -3.2 -14.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27995 -3.2 -15.7 choline dehydrogenase conserved
PFLU_RS27970 -3.1 -10.3 choline ABC transporter permease subunit compare
PFLU_RS04465 -3.1 -11.1 ATP phosphoribosyltransferase compare
PFLU_RS27860 -3.1 -10.2 glycine-betaine demethylase subunit GbcB compare
PFLU_RS20565 -3.1 -16.3 3-isopropylmalate dehydrogenase compare
PFLU_RS27810 -3.1 -17.8 sarcosine oxidase subunit alpha compare
PFLU_RS00175 -3.0 -7.8 tryptophan synthase subunit alpha compare
PFLU_RS27815 -3.0 -8.5 sarcosine oxidase subunit delta compare
PFLU_RS01900 -3.0 -7.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS27990 -3.0 -9.0 betaine-aldehyde dehydrogenase conserved
PFLU_RS18530 -2.9 -4.4 DNA translocase FtsK compare
PFLU_RS24765 -2.9 -19.9 2-isopropylmalate synthase compare
PFLU_RS28390 -2.9 -10.4 methionine biosynthesis protein MetW compare
PFLU_RS27870 -2.9 -14.6 electron transfer flavoprotein subunit beta compare
PFLU_RS27365 -2.9 -10.8 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS27370 -2.9 -14.1 anthranilate phosphoribosyltransferase compare
PFLU_RS03240 -2.8 -14.5 copper-translocating P-type ATPase compare
PFLU_RS02590 -2.8 -10.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01620 -2.8 -9.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS08655 -2.8 -4.9 heme ABC transporter permease compare
PFLU_RS27820 -2.8 -12.6 sarcosine oxidase subunit beta compare
PFLU_RS20540 -2.8 -12.1 phosphoribosylanthranilate isomerase compare
PFLU_RS27880 -2.7 -9.3 dimethylglycine demethylation protein DgcB compare
PFLU_RS27885 -2.7 -13.7 dimethylglycine demethylation protein DgcA compare
PFLU_RS25715 -2.7 -9.5 RNA polymerase-binding protein DksA compare
PFLU_RS04470 -2.7 -11.9 histidinol dehydrogenase compare
PFLU_RS27865 -2.7 -11.5 glycine-betaine demethylase subunit GbcA compare
PFLU_RS27965 -2.7 -12.4 choline ABC transporter substrate-binding protein compare
PFLU_RS28165 -2.7 -12.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS22835 -2.6 -9.5 amidotransferase compare
PFLU_RS18505 -2.6 -8.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS07665 -2.6 -2.5 type I DNA topoisomerase compare
PFLU_RS12980 -2.6 -9.7 nitrite/sulfite reductase compare
PFLU_RS28385 -2.6 -12.5 homoserine O-acetyltransferase compare
PFLU_RS25920 -2.6 -3.6 outer membrane protein assembly factor BamE compare
PFLU_RS08670 -2.5 -8.3 heme lyase CcmF/NrfE family subunit compare
PFLU_RS12975 -2.5 -5.6 DUF934 domain-containing protein compare
PFLU_RS20510 -2.5 -14.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS18675 -2.5 -2.4 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS08665 -2.4 -5.9 cytochrome c maturation protein CcmE compare
PFLU_RS15410 -2.4 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS01610 -2.4 -10.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS08505 -2.4 -7.6 protease HtpX compare
PFLU_RS08160 -2.3 -6.6 sugar transferase compare
PFLU_RS20515 -2.3 -4.4 amidophosphoribosyltransferase compare
PFLU_RS08165 -2.3 -3.4 acyl carrier protein compare
PFLU_RS28655 -2.3 -12.8 HAD family hydrolase compare
PFLU_RS01605 -2.3 -8.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS19170 -2.3 -4.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS31800 -2.2 -2.2 hypothetical protein compare
PFLU_RS23470 -2.2 -11.3 glycerophosphoryl diester phosphodiesterase conserved
PFLU_RS18665 -2.2 -3.0 NADH-quinone oxidoreductase subunit L compare
PFLU_RS10325 -2.2 -8.4 MFS transporter compare
PFLU_RS27825 -2.2 -10.2 serine hydroxymethyltransferase compare
PFLU_RS02370 -2.2 -8.3 glycosyltransferase compare
PFLU_RS04150 -2.1 -7.3 DUF1043 family protein compare
PFLU_RS25360 -2.1 -7.1 glutamate 5-kinase compare
PFLU_RS27890 -2.1 -10.1 hypothetical protein compare
PFLU_RS08125 -2.1 -2.8 integration host factor subunit beta compare
PFLU_RS02365 -2.1 -10.3 glycosyltransferase compare
PFLU_RS28315 -2.1 -1.0 response regulator compare
PFLU_RS27955 -2.1 -6.6 GlxA family transcriptional regulator compare
PFLU_RS08065 -2.1 -7.4 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS27805 -2.0 -2.0 sarcosine oxidase subunit gamma family protein compare
PFLU_RS29760 -2.0 -10.0 phosphate ABC transporter permease PstA compare
PFLU_RS13540 -2.0 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS05750 -2.0 -2.4 methionine--tRNA ligase compare
PFLU_RS29755 -2.0 -11.5 phosphate ABC transporter ATP-binding protein compare
PFLU_RS24790 -2.0 -5.0 tetratricopeptide repeat protein compare
PFLU_RS27975 -2.0 -5.4 choline ABC transporter ATP-binding protein compare
PFLU_RS22740 -2.0 -4.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS29770 -1.9 -10.6 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS08675 -1.9 -4.6 DsbE family thiol:disulfide interchange protein compare
PFLU_RS22105 -1.9 -3.8 cysteine synthase CysM compare
PFLU_RS21300 -1.9 -4.9 cysteine hydrolase compare
PFLU_RS18655 -1.9 -1.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS04330 -1.9 -13.1 TIGR02099 family protein compare
PFLU_RS25645 -1.9 -2.3 acetolactate synthase small subunit compare
PFLU_RS19175 -1.9 -6.7 trigger factor compare
PFLU_RS14440 -1.9 -1.3 hypothetical protein compare
PFLU_RS08660 -1.9 -3.1 heme exporter protein CcmD compare
PFLU_RS24025 -1.8 -9.7 quinolinate synthase NadA compare
PFLU_RS18940 -1.8 -8.8 acyl-CoA dehydrogenase compare
PFLU_RS25730 -1.8 -8.5 PAS domain S-box protein compare
PFLU_RS24015 -1.8 -3.2 cold-shock protein compare
PFLU_RS21215 -1.8 -2.0 YheU family protein compare
PFLU_RS22520 -1.8 -2.6 GntR family transcriptional regulator compare
PFLU_RS19015 -1.8 -7.7 anti-sigma factor compare
PFLU_RS13105 -1.7 -2.3 nuclear transport factor 2 family protein compare
PFLU_RS29515 -1.7 -8.6 RidA family protein compare
PFLU_RS22395 -1.7 -5.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS12580 -1.7 -7.9 MurR/RpiR family transcriptional regulator compare
PFLU_RS29765 -1.7 -12.5 ABC transporter permease subunit compare
PFLU_RS05890 -1.7 -1.2 recombination regulator RecX compare
PFLU_RS18645 -1.7 -1.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS00210 -1.7 -2.1 OsmC family protein compare
PFLU_RS18635 -1.6 -2.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS07245 -1.6 -7.2 DegQ family serine endoprotease compare
PFLU_RS08180 -1.6 -5.1 ketoacyl-ACP synthase III compare
PFLU_RS22605 -1.6 -6.8 mechanosensitive ion channel compare
PFLU_RS28965 -1.6 -7.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS15610 -1.6 -4.4 helix-turn-helix transcriptional regulator compare
PFLU_RS03970 -1.6 -7.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS08625 -1.6 -3.2 molybdenum cofactor biosynthesis protein B compare
PFLU_RS31590 -1.6 -1.9 hypothetical protein compare
PFLU_RS18395 -1.6 -1.0 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS29875 -1.6 -10.1 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS15795 -1.5 -1.8 hypothetical protein compare
PFLU_RS23010 -1.5 -7.9 radical SAM protein compare
PFLU_RS11620 -1.5 -8.0 FadR family transcriptional regulator compare
PFLU_RS21740 -1.5 -5.8 Hpt domain-containing protein compare
PFLU_RS18620 -1.5 -3.0 NADH-quinone oxidoreductase subunit B compare
PFLU_RS31330 -1.5 -5.0 hypothetical protein compare
PFLU_RS02355 -1.5 -4.6 GNAT family N-acetyltransferase compare
PFLU_RS25225 -1.5 -6.1 disulfide bond formation protein B compare
PFLU_RS04220 -1.5 -6.8 FadR family transcriptional regulator compare
PFLU_RS03665 -1.5 -4.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS09100 -1.5 -5.1 HAMP domain-containing protein compare
PFLU_RS02565 -1.5 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS11525 -1.5 -3.8 GntR family transcriptional regulator compare
PFLU_RS03765 -1.5 -6.9 sulfate adenylyltransferase subunit CysD compare
PFLU_RS12175 -1.5 -1.2 methyl-accepting chemotaxis protein compare
PFLU_RS14995 -1.5 -2.1 response regulator transcription factor compare
PFLU_RS05585 -1.4 -4.0 MtnX-like HAD-IB family phosphatase compare
PFLU_RS12660 -1.4 -5.0 hypothetical protein compare
PFLU_RS21425 -1.4 -4.0 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS00065 -1.4 -6.6 lysophospholipid acyltransferase compare
PFLU_RS29090 -1.4 -6.3 exopolyphosphatase compare
PFLU_RS04935 -1.4 -4.2 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS03770 -1.4 -8.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS24085 -1.4 -3.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS29880 -1.4 -9.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS29000 -1.4 -9.9 glycerol-3-phosphate transporter conserved
PFLU_RS24090 -1.4 -2.7 Holliday junction branch migration protein RuvA compare
PFLU_RS21985 -1.4 -3.4 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS23185 -1.4 -8.4 protein-glutamate O-methyltransferase CheR compare
PFLU_RS18550 -1.4 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS04565 -1.4 -1.4 TMEM165/GDT1 family protein compare
PFLU_RS16310 -1.4 -2.4 hypothetical protein compare
PFLU_RS30525 -1.4 -8.0 SDR family oxidoreductase compare
PFLU_RS26640 -1.4 -6.4 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS01360 -1.4 -8.1 FdhF/YdeP family oxidoreductase compare
PFLU_RS26735 -1.4 -4.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS15910 -1.4 -2.0 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS05695 -1.3 -5.4 bacterioferritin compare
PFLU_RS18625 -1.3 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS14810 -1.3 -1.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS01285 -1.3 -1.5 HAMP domain-containing protein compare
PFLU_RS07225 -1.3 -9.0 L-aspartate oxidase compare
PFLU_RS08630 -1.3 -4.8 molybdopterin molybdotransferase MoeA compare
PFLU_RS06055 -1.3 -1.5 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS25735 -1.3 -1.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00390 -1.3 -3.1 DUF2782 domain-containing protein compare
PFLU_RS18755 -1.3 -5.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS21665 -1.3 -4.0 MinD/ParA family protein compare
PFLU_RS30530 -1.3 -5.2 acetyltransferase compare
PFLU_RS22095 -1.3 -9.2 GTP diphosphokinase compare
PFLU_RS18670 -1.3 -1.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS28035 -1.3 -6.8 transporter substrate-binding domain-containing protein compare
PFLU_RS07685 -1.3 -3.4 transcriptional repressor LexA compare
PFLU_RS15205 -1.3 -2.3 ribose ABC transporter permease compare
PFLU_RS08685 -1.3 -6.2 c-type cytochrome biogenesis protein CcmI compare
PFLU_RS19165 -1.3 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS22360 -1.3 -9.3 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS01625 -1.3 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS17545 -1.3 -1.0 DUF465 domain-containing protein compare
PFLU_RS01585 -1.3 -4.9 oxidative damage protection protein compare
PFLU_RS05595 -1.3 -5.4 alpha/beta fold hydrolase compare
PFLU_RS28695 -1.3 -4.0 phosphoglycerate dehydrogenase compare
PFLU_RS23815 -1.3 -8.9 GGDEF and EAL domain-containing protein compare
PFLU_RS30505 -1.3 -4.2 hypothetical protein compare
PFLU_RS30165 -1.3 -5.9 ParA family protein compare
PFLU_RS21645 -1.3 -6.8 chemotaxis protein CheA compare
PFLU_RS14805 -1.3 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS08410 -1.3 -5.5 HTH-type transcriptional regulator CysB compare
PFLU_RS08620 -1.3 -4.4 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS07755 -1.2 -4.1 heavy metal sensor histidine kinase compare
PFLU_RS24255 -1.2 -6.4 pyruvate kinase compare
PFLU_RS01365 -1.2 -4.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
PFLU_RS09305 -1.2 -8.6 hypothetical protein compare
PFLU_RS29885 -1.2 -6.1 LysR family transcriptional regulator compare
PFLU_RS00415 -1.2 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS08260 -1.2 -2.1 CHAD domain-containing protein compare
PFLU_RS13010 -1.2 -3.2 Fe-S biogenesis protein NfuA compare
PFLU_RS26635 -1.2 -4.0 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS08185 -1.2 -6.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS18080 -1.2 -2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS04195 -1.2 -4.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS29550 -1.2 -5.5 ATP-dependent DNA helicase RecG compare
PFLU_RS17340 -1.2 -3.0 AAA family ATPase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source sn-glycero-3-phosphocholine in Pseudomonas fluorescens SBW25-INTG

For carbon source sn-glycero-3-phosphocholine across organisms