Experiment set27S412 for Pseudomonas fluorescens SBW25-INTG

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Cytidine carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS28695 -4.3 -10.3 phosphoglycerate dehydrogenase compare
PFLU_RS20575 -4.0 -6.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS04465 -3.9 -11.0 ATP phosphoribosyltransferase compare
PFLU_RS28535 -3.9 -17.9 dihydroxy-acid dehydratase compare
PFLU_RS10325 -3.9 -10.3 MFS transporter compare
PFLU_RS25640 -3.9 -13.3 ketol-acid reductoisomerase compare
PFLU_RS20580 -3.7 -13.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20370 -3.7 -13.2 ABC transporter permease conserved
PFLU_RS01620 -3.6 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04470 -3.6 -11.6 histidinol dehydrogenase compare
PFLU_RS27370 -3.6 -15.3 anthranilate phosphoribosyltransferase compare
PFLU_RS22835 -3.5 -9.2 amidotransferase compare
PFLU_RS02490 -3.5 -15.6 phosphoserine phosphatase SerB compare
PFLU_RS28385 -3.5 -15.6 homoserine O-acetyltransferase compare
PFLU_RS28165 -3.4 -13.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08505 -3.4 -7.1 protease HtpX compare
PFLU_RS01900 -3.4 -7.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24765 -3.3 -22.6 2-isopropylmalate synthase compare
PFLU_RS20510 -3.3 -15.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS12980 -3.3 -9.1 nitrite/sulfite reductase compare
PFLU_RS20565 -3.3 -15.7 3-isopropylmalate dehydrogenase compare
PFLU_RS20360 -3.3 -7.7 ribokinase conserved
PFLU_RS00180 -3.2 -8.3 tryptophan synthase subunit beta compare
PFLU_RS20380 -3.2 -8.7 sugar ABC transporter substrate-binding protein conserved
PFLU_RS02590 -3.2 -10.4 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20375 -3.2 -16.4 sugar ABC transporter ATP-binding protein conserved
PFLU_RS20540 -3.2 -12.5 phosphoribosylanthranilate isomerase compare
PFLU_RS28390 -3.1 -12.6 methionine biosynthesis protein MetW compare
PFLU_RS00175 -3.0 -8.8 tryptophan synthase subunit alpha compare
PFLU_RS12975 -3.0 -5.2 DUF934 domain-containing protein compare
PFLU_RS19170 -2.9 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS18505 -2.9 -8.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS07805 -2.8 -15.9 transaldolase compare
PFLU_RS27365 -2.8 -11.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01625 -2.8 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS14810 -2.7 -3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS24025 -2.7 -12.7 quinolinate synthase NadA compare
PFLU_RS03970 -2.6 -10.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25715 -2.6 -9.4 RNA polymerase-binding protein DksA compare
PFLU_RS08665 -2.6 -6.0 cytochrome c maturation protein CcmE compare
PFLU_RS18665 -2.6 -1.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS01605 -2.5 -8.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29880 -2.5 -15.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25360 -2.5 -8.3 glutamate 5-kinase compare
PFLU_RS29875 -2.5 -15.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS20515 -2.5 -4.0 amidophosphoribosyltransferase compare
PFLU_RS15410 -2.4 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS28645 -2.4 -13.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS02365 -2.4 -12.2 glycosyltransferase compare
PFLU_RS18530 -2.4 -4.2 DNA translocase FtsK compare
PFLU_RS08670 -2.3 -8.2 heme lyase CcmF/NrfE family subunit compare
PFLU_RS22070 -2.3 -2.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS18675 -2.2 -2.6 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS21300 -2.2 -5.2 cysteine hydrolase compare
PFLU_RS09055 -2.2 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS23920 -2.2 -2.9 septation protein A compare
PFLU_RS29885 -2.1 -9.9 LysR family transcriptional regulator compare
PFLU_RS23730 -2.1 -12.4 MurR/RpiR family transcriptional regulator compare
PFLU_RS30345 -2.1 -3.1 DUF2559 family protein compare
PFLU_RS18635 -2.1 -1.4 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS22605 -2.1 -7.2 mechanosensitive ion channel compare
PFLU_RS01610 -2.1 -10.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS25645 -2.1 -2.7 acetolactate synthase small subunit compare
PFLU_RS04660 -2.1 -7.3 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS19165 -2.1 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS26905 -2.0 -9.7 transcriptional regulator NrdR compare
PFLU_RS14805 -2.0 -2.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS18670 -2.0 -1.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS23220 -2.0 -4.4 tRNA-Arg compare
PFLU_RS13540 -2.0 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25750 -1.9 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS03765 -1.9 -9.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS03770 -1.9 -11.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS08675 -1.9 -4.4 DsbE family thiol:disulfide interchange protein compare
PFLU_RS08650 -1.9 -2.7 heme exporter protein CcmB compare
PFLU_RS23310 -1.8 -8.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS22740 -1.8 -4.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS18625 -1.8 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS11505 -1.8 -2.5 ABC transporter substrate-binding protein compare
PFLU_RS26020 -1.8 -10.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS13485 -1.8 -12.4 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS07225 -1.8 -12.1 L-aspartate oxidase compare
PFLU_RS04565 -1.8 -2.0 TMEM165/GDT1 family protein compare
PFLU_RS08165 -1.8 -3.0 acyl carrier protein compare
PFLU_RS01965 -1.8 -1.2 ATP-dependent protease subunit HslV compare
PFLU_RS29760 -1.8 -9.3 phosphate ABC transporter permease PstA compare
PFLU_RS21665 -1.7 -4.9 MinD/ParA family protein compare
PFLU_RS04220 -1.7 -7.6 FadR family transcriptional regulator compare
PFLU_RS08990 -1.7 -2.3 hypothetical protein compare
PFLU_RS24095 -1.7 -2.2 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS02670 -1.7 -4.6 hypothetical protein compare
PFLU_RS24090 -1.7 -3.0 Holliday junction branch migration protein RuvA compare
PFLU_RS22105 -1.6 -3.7 cysteine synthase CysM compare
PFLU_RS02275 -1.6 -1.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS24085 -1.6 -3.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS27475 -1.6 -5.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS08660 -1.6 -3.3 heme exporter protein CcmD compare
PFLU_RS03240 -1.6 -9.8 copper-translocating P-type ATPase compare
PFLU_RS20290 -1.6 -1.6 integration host factor subunit alpha compare
PFLU_RS18550 -1.6 -7.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS28655 -1.6 -10.2 HAD family hydrolase compare
PFLU_RS24330 -1.6 -2.6 phosphogluconate dehydratase compare
PFLU_RS04150 -1.5 -6.2 DUF1043 family protein compare
PFLU_RS26565 -1.5 -2.0 rRNA maturation RNase YbeY compare
PFLU_RS06055 -1.5 -3.0 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS25730 -1.5 -8.9 PAS domain S-box protein compare
PFLU_RS02370 -1.5 -8.2 glycosyltransferase compare
PFLU_RS15610 -1.5 -4.2 helix-turn-helix transcriptional regulator compare
PFLU_RS22095 -1.5 -10.9 GTP diphosphokinase compare
PFLU_RS30165 -1.5 -7.3 ParA family protein compare
PFLU_RS08185 -1.5 -8.5 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS24245 -1.5 -6.8 PilZ domain-containing protein compare
PFLU_RS04835 -1.4 -1.7 hypothetical protein compare
PFLU_RS29550 -1.4 -6.8 ATP-dependent DNA helicase RecG compare
PFLU_RS25735 -1.4 -1.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS07685 -1.4 -2.9 transcriptional repressor LexA compare
PFLU_RS06815 -1.4 -7.1 TetR family transcriptional regulator compare
PFLU_RS28650 -1.4 -5.1 RNA pyrophosphohydrolase compare
PFLU_RS08160 -1.4 -6.1 sugar transferase compare
PFLU_RS18005 -1.4 -3.0 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS09305 -1.4 -9.5 hypothetical protein compare
PFLU_RS25760 -1.4 -2.1 glucose-6-phosphate isomerase compare
PFLU_RS03665 -1.4 -4.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS01895 -1.4 -4.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS29215 -1.4 -8.6 response regulator transcription factor compare
PFLU_RS02355 -1.4 -6.9 GNAT family N-acetyltransferase compare
PFLU_RS19550 -1.4 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS23725 -1.4 -4.0 glucose-6-phosphate dehydrogenase compare
PFLU_RS31590 -1.3 -1.6 hypothetical protein compare
PFLU_RS11525 -1.3 -3.6 GntR family transcriptional regulator compare
PFLU_RS09575 -1.3 -4.0 FadR family transcriptional regulator compare
PFLU_RS03325 -1.3 -8.3 aspartate aminotransferase family protein compare
PFLU_RS04330 -1.3 -10.2 TIGR02099 family protein compare
PFLU_RS05885 -1.3 -2.4 recombinase RecA compare
PFLU_RS30530 -1.3 -6.7 acetyltransferase compare
PFLU_RS25815 -1.3 -3.0 transcription termination/antitermination protein NusA compare
PFLU_RS00415 -1.3 -1.5 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25755 -1.3 -0.9 pantoate--beta-alanine ligase compare
PFLU_RS02565 -1.3 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS21360 -1.3 -1.9 MarR family transcriptional regulator compare
PFLU_RS14820 -1.3 -3.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS23305 -1.3 -7.4 arginine N-succinyltransferase compare
PFLU_RS18755 -1.3 -5.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS19175 -1.3 -5.5 trigger factor compare
PFLU_RS22395 -1.2 -4.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS07650 -1.2 -7.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS07255 -1.2 -4.1 sulfurtransferase TusA family protein compare
PFLU_RS24695 -1.2 -1.9 PTS glucose transporter subunit IIB compare
PFLU_RS29750 -1.2 -4.1 phosphate signaling complex protein PhoU compare
PFLU_RS24825 -1.2 -3.1 Fe-S cluster assembly protein IscX compare
PFLU_RS27650 -1.2 -8.8 biotin synthase BioB compare
PFLU_RS27440 -1.2 -4.8 nucleotidyltransferase family protein compare
PFLU_RS08655 -1.2 -3.1 heme ABC transporter permease compare
PFLU_RS24335 -1.2 -7.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS25920 -1.2 -2.7 outer membrane protein assembly factor BamE compare
PFLU_RS30505 -1.2 -4.6 hypothetical protein compare
PFLU_RS07215 -1.2 -4.4 hypothetical protein compare
PFLU_RS24125 -1.2 -2.3 cold-shock protein compare
PFLU_RS26770 -1.1 -7.7 DedA family protein compare
PFLU_RS04195 -1.1 -5.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS29900 -1.1 -7.3 DNA helicase II compare
PFLU_RS23100 -1.1 -3.6 ribonuclease E compare
PFLU_RS18655 -1.1 -1.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS03250 -1.1 -1.4 heavy-metal-associated domain-containing protein compare
PFLU_RS01765 -1.1 -6.2 histidine utilization repressor compare
PFLU_RS02825 -1.1 -1.7 phosphate starvation-inducible protein PsiF compare
PFLU_RS28420 -1.1 -5.7 thiazole synthase compare
PFLU_RS23070 -1.1 -1.5 50S ribosomal protein L32 compare
PFLU_RS13665 -1.1 -0.9 MarR family transcriptional regulator compare
PFLU_RS07665 -1.1 -2.2 type I DNA topoisomerase compare
PFLU_RS18395 -1.1 -1.3 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS25800 -1.1 -4.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS12660 -1.0 -4.2 hypothetical protein compare
PFLU_RS05965 -1.0 -1.6 hypothetical protein compare
PFLU_RS16565 -1.0 -2.6 hypothetical protein compare
PFLU_RS28690 -1.0 -7.3 FAD-binding oxidoreductase compare
PFLU_RS01960 -1.0 -0.7 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS08190 -1.0 -7.9 polysaccharide biosynthesis protein compare
PFLU_RS23380 -1.0 -1.5 HAD-IB family hydrolase compare
PFLU_RS01615 -1.0 -3.0 DUF2164 domain-containing protein compare
PFLU_RS01910 -1.0 -1.3 sterol-binding protein compare
PFLU_RS07245 -1.0 -5.2 DegQ family serine endoprotease compare
PFLU_RS31645 -1.0 -2.4 hypothetical protein compare
PFLU_RS04325 -1.0 -7.3 ribonuclease G compare
PFLU_RS09885 -1.0 -4.9 threonine synthase compare
PFLU_RS04205 -1.0 -6.5 cytochrome c1 compare
PFLU_RS08685 -1.0 -5.7 c-type cytochrome biogenesis protein CcmI compare
PFLU_RS15310 -1.0 -2.0 YgdI/YgdR family lipoprotein compare
PFLU_RS29515 -1.0 -5.8 RidA family protein compare
PFLU_RS03960 -1.0 -2.7 tRNA-Thr compare
PFLU_RS20040 -1.0 -2.7 GntR family transcriptional regulator compare
PFLU_RS16510 -1.0 -1.7 thiol-disulfide oxidoreductase DCC family protein compare
PFLU_RS25585 -0.9 -0.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS20625 -0.9 -2.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS27265 -0.9 -2.6 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS16460 -0.9 -3.8 PIG-L family deacetylase compare
PFLU_RS27620 -0.9 -7.6 acyl-CoA dehydrogenase compare
PFLU_RS24255 -0.9 -5.2 pyruvate kinase compare
PFLU_RS29975 -0.9 -2.5 ATP-binding cassette domain-containing protein compare
PFLU_RS27380 -0.9 -6.2 anthranilate synthase component I compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Cytidine in Pseudomonas fluorescens SBW25-INTG

For carbon source Cytidine across organisms