Experiment set27S407 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Quinic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS04835 -5.1 -1.1 hypothetical protein compare
PFLU_RS31780 -4.4 -2.6 hypothetical protein compare
PFLU_RS31800 -4.2 -2.0 hypothetical protein compare
PFLU_RS18735 -4.1 -1.3 hypothetical protein compare
PFLU_RS03995 -3.9 -1.5 hypothetical protein compare
PFLU_RS13365 -3.8 -1.6 hypothetical protein compare
PFLU_RS13765 -3.7 -1.4 hypothetical protein compare
PFLU_RS12635 -3.6 -2.1 conjugal transfer protein TraR compare
PFLU_RS25190 -3.4 -2.3 hypothetical protein compare
PFLU_RS06855 -3.4 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS04465 -3.4 -9.9 ATP phosphoribosyltransferase compare
PFLU_RS24670 -3.3 -1.6 HigA family addiction module antidote protein compare
PFLU_RS23590 -3.2 -2.1 gluconokinase compare
PFLU_RS20575 -3.2 -6.4 3-isopropylmalate dehydratase small subunit compare
PFLU_RS10660 -3.2 -3.3 DUF1652 domain-containing protein compare
PFLU_RS20510 -3.2 -13.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20565 -3.1 -14.3 3-isopropylmalate dehydrogenase compare
PFLU_RS19665 -3.1 -1.3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS15310 -3.1 -2.3 YgdI/YgdR family lipoprotein compare
PFLU_RS25640 -3.1 -13.3 ketol-acid reductoisomerase compare
PFLU_RS21215 -3.1 -1.3 YheU family protein compare
PFLU_RS05020 -3.1 -1.1 DUF1120 domain-containing protein compare
PFLU_RS12975 -3.1 -4.2 DUF934 domain-containing protein compare
PFLU_RS02180 -3.1 -1.0 thioredoxin TrxC compare
PFLU_RS25955 -3.1 -1.6 hypothetical protein compare
PFLU_RS01605 -3.1 -6.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20580 -3.1 -12.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS14305 -3.0 -2.0 sensor histidine kinase compare
PFLU_RS06760 -3.0 -11.8 3-oxoadipate enol-lactonase compare
PFLU_RS06055 -3.0 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS28695 -3.0 -9.3 phosphoglycerate dehydrogenase compare
PFLU_RS06735 -3.0 -8.7 3-oxoadipyl-CoA thiolase compare
PFLU_RS27365 -3.0 -10.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS08165 -3.0 -2.0 acyl carrier protein compare
PFLU_RS06730 -2.9 -11.8 CoA-transferase subunit beta compare
PFLU_RS06725 -2.9 -10.0 CoA transferase subunit A compare
PFLU_RS23305 -2.9 -9.1 arginine N-succinyltransferase compare
PFLU_RS24025 -2.8 -11.5 quinolinate synthase NadA compare
PFLU_RS13605 -2.8 -3.9 DUF4880 domain-containing protein compare
PFLU_RS24765 -2.8 -19.3 2-isopropylmalate synthase compare
PFLU_RS20540 -2.8 -10.5 phosphoribosylanthranilate isomerase compare
PFLU_RS28165 -2.8 -11.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01005 -2.8 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS28385 -2.8 -13.8 homoserine O-acetyltransferase compare
PFLU_RS23205 -2.8 -12.0 flagellar protein FlgN compare
PFLU_RS01895 -2.7 -6.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS25360 -2.7 -8.6 glutamate 5-kinase compare
PFLU_RS31805 -2.7 -2.3 hypothetical protein compare
PFLU_RS17080 -2.7 -3.7 FadR family transcriptional regulator compare
PFLU_RS28390 -2.7 -11.2 methionine biosynthesis protein MetW compare
PFLU_RS27370 -2.7 -13.4 anthranilate phosphoribosyltransferase compare
PFLU_RS12980 -2.7 -6.4 nitrite/sulfite reductase compare
PFLU_RS07255 -2.7 -4.4 sulfurtransferase TusA family protein compare
PFLU_RS01620 -2.7 -7.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS22470 -2.7 -2.5 hypothetical protein compare
PFLU_RS07225 -2.7 -16.0 L-aspartate oxidase compare
PFLU_RS04470 -2.6 -10.4 histidinol dehydrogenase compare
PFLU_RS06745 -2.6 -5.7 protocatechuate 3,4-dioxygenase subunit alpha compare
PFLU_RS02590 -2.6 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25120 -2.6 -2.3 response regulator compare
PFLU_RS13760 -2.6 -2.4 hypothetical protein compare
PFLU_RS06755 -2.6 -10.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS02490 -2.5 -13.7 phosphoserine phosphatase SerB compare
PFLU_RS06740 -2.5 -11.0 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS28535 -2.5 -15.1 dihydroxy-acid dehydratase compare
PFLU_RS18505 -2.5 -6.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS19935 -2.5 -1.8 type II secretion system protein GspF compare
PFLU_RS29515 -2.5 -12.2 RidA family protein compare
PFLU_RS20660 -2.5 -13.1 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS31710 -2.5 -2.0 hypothetical protein compare
PFLU_RS12715 -2.5 -1.3 fumarylacetoacetate hydrolase family protein compare
PFLU_RS26490 -2.5 -3.3 cation diffusion facilitator family transporter compare
PFLU_RS12145 -2.5 -1.6 nuclear transport factor 2 family protein compare
PFLU_RS14550 -2.4 -6.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS02355 -2.4 -8.4 GNAT family N-acetyltransferase compare
PFLU_RS06765 -2.4 -4.4 4-carboxymuconolactone decarboxylase compare
PFLU_RS06715 -2.4 -10.6 IclR family transcriptional regulator compare
PFLU_RS00180 -2.4 -7.1 tryptophan synthase subunit beta compare
PFLU_RS08625 -2.4 -3.7 molybdenum cofactor biosynthesis protein B compare
PFLU_RS17160 -2.4 -2.2 hypothetical protein compare
PFLU_RS21640 -2.4 -6.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS06320 -2.4 -2.6 OmpH family outer membrane protein compare
PFLU_RS03970 -2.3 -10.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS29550 -2.3 -7.0 ATP-dependent DNA helicase RecG compare
PFLU_RS07195 -2.3 -4.0 hypothetical protein compare
PFLU_RS00175 -2.3 -7.5 tryptophan synthase subunit alpha compare
PFLU_RS19555 -2.3 -1.6 histidine phosphatase family protein compare
PFLU_RS17920 -2.3 -2.0 acyltransferase compare
PFLU_RS20515 -2.3 -2.7 amidophosphoribosyltransferase compare
PFLU_RS07320 -2.2 -4.2 hypothetical protein compare
PFLU_RS01900 -2.2 -6.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04945 -2.2 -2.5 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS21755 -2.2 -8.3 flagella biosynthesis chaperone FliJ compare
PFLU_RS01610 -2.2 -9.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS31530 -2.2 -0.8 transposase compare
PFLU_RS13085 -2.2 -4.0 DUF1315 family protein compare
PFLU_RS28315 -2.2 -0.6 response regulator compare
PFLU_RS27690 -2.2 -1.8 response regulator compare
PFLU_RS23310 -2.2 -7.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS19515 -2.2 -3.8 sugar ABC transporter ATP-binding protein compare
PFLU_RS02050 -2.2 -15.2 NAD(P)-binding protein compare
PFLU_RS04505 -2.2 -4.1 hypothetical protein compare
PFLU_RS03600 -2.2 -4.4 hypothetical protein compare
PFLU_RS28655 -2.1 -11.3 HAD family hydrolase compare
PFLU_RS21695 -2.1 -4.6 flagellar biosynthesis protein FlhB compare
PFLU_RS02045 -2.1 -17.3 glutamate synthase large subunit compare
PFLU_RS21775 -2.1 -9.0 flagellar basal body M-ring protein FliF compare
PFLU_RS17505 -2.1 -2.6 hypothetical protein compare
PFLU_RS26375 -2.1 -14.3 MFS transporter conserved
PFLU_RS26905 -2.0 -9.5 transcriptional regulator NrdR compare
PFLU_RS21860 -2.0 -5.3 flagellar basal body rod protein FlgF compare
PFLU_RS08660 -2.0 -2.9 heme exporter protein CcmD compare
PFLU_RS13795 -2.0 -1.0 hypothetical protein compare
PFLU_RS10135 -2.0 -3.2 hypothetical protein compare
PFLU_RS21725 -2.0 -7.3 flagellar motor switch protein FliM compare
PFLU_RS21855 -2.0 -7.4 flagellar basal-body rod protein FlgG compare
PFLU_RS17545 -2.0 -1.0 DUF465 domain-containing protein compare
PFLU_RS22190 -2.0 -0.8 hypothetical protein compare
PFLU_RS14805 -2.0 -1.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS28270 -2.0 -1.8 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS23195 -2.0 -10.9 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS23065 -2.0 -8.9 phosphate acyltransferase PlsX compare
PFLU_RS25750 -2.0 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS30160 -2.0 -2.3 ParB/RepB/Spo0J family partition protein compare
PFLU_RS21705 -2.0 -4.8 flagellar biosynthesis protein FliQ compare
PFLU_RS31590 -2.0 -1.3 hypothetical protein compare
PFLU_RS07645 -2.0 -4.0 hypothetical protein compare
PFLU_RS22740 -2.0 -2.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS18410 -1.9 -3.0 response regulator compare
PFLU_RS00695 -1.9 -0.8 DUF2789 domain-containing protein compare
PFLU_RS26355 -1.9 -5.6 type II 3-dehydroquinate dehydratase conserved
PFLU_RS29310 -1.9 -0.6 accessory factor UbiK family protein compare
PFLU_RS25645 -1.9 -1.9 acetolactate synthase small subunit compare
PFLU_RS21820 -1.9 -9.9 flagellin compare
PFLU_RS21635 -1.9 -5.8 flagellar motor protein compare
PFLU_RS21710 -1.9 -5.2 flagellar type III secretion system pore protein FliP compare
PFLU_RS21765 -1.9 -5.0 flagellar assembly protein FliH compare
PFLU_RS08370 -1.9 -2.8 hypothetical protein compare
PFLU_RS26565 -1.9 -1.2 rRNA maturation RNase YbeY compare
PFLU_RS19855 -1.9 -1.8 DUF4398 domain-containing protein compare
PFLU_RS21830 -1.9 -13.2 flagellar hook-associated protein 3 compare
PFLU_RS01625 -1.9 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS26145 -1.9 -1.0 hypothetical protein compare
PFLU_RS31755 -1.8 -0.9 hypothetical protein compare
PFLU_RS07245 -1.8 -7.6 DegQ family serine endoprotease compare
PFLU_RS10405 -1.8 -1.9 helix-turn-helix transcriptional regulator compare
PFLU_RS23175 -1.8 -5.7 flagellar basal body rod protein FlgC compare
PFLU_RS18665 -1.8 -1.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS21810 -1.8 -12.6 flagellar filament capping protein FliD compare
PFLU_RS21240 -1.8 -1.1 hypothetical protein compare
PFLU_RS03765 -1.8 -9.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS29360 -1.8 -1.3 cytochrome c5 family protein compare
PFLU_RS14820 -1.8 -3.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS08505 -1.8 -6.2 protease HtpX compare
PFLU_RS29065 -1.8 -0.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS21735 -1.8 -7.1 flagellar hook-length control protein FliK compare
PFLU_RS30390 -1.8 -2.1 type III secretion system rspB compare
PFLU_RS05720 -1.8 -8.1 OmpA family protein compare
PFLU_RS10250 -1.7 -4.0 glycosyltransferase family 2 protein compare
PFLU_RS22030 -1.7 -2.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS07665 -1.7 -2.3 type I DNA topoisomerase compare
PFLU_RS31185 -1.7 -4.9 hypothetical protein compare
PFLU_RS07695 -1.7 -2.0 beta-N-acetylhexosaminidase compare
PFLU_RS13050 -1.7 -3.6 VWA domain-containing protein compare
PFLU_RS07650 -1.7 -8.4 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS21360 -1.7 -1.1 MarR family transcriptional regulator compare
PFLU_RS23165 -1.7 -11.0 flagellar hook protein FlgE compare
PFLU_RS02000 -1.7 -12.6 penicillin-binding protein 1A compare
PFLU_RS25225 -1.7 -5.7 disulfide bond formation protein B compare
PFLU_RS14715 -1.7 -5.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS06750 -1.7 -10.2 MFS transporter compare
PFLU_RS21675 -1.7 -9.5 flagellar biosynthesis protein FlhA compare
PFLU_RS01875 -1.7 -0.7 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS22095 -1.7 -11.9 GTP diphosphokinase compare
PFLU_RS01995 -1.7 -8.7 malate dehydrogenase compare
PFLU_RS09945 -1.7 -2.7 catalase family protein compare
PFLU_RS20405 -1.7 -3.7 carbon storage regulator CsrA compare
PFLU_RS27630 -1.6 -3.4 dethiobiotin synthase compare
PFLU_RS30645 -1.6 -1.8 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS23070 -1.6 -1.0 50S ribosomal protein L32 compare
PFLU_RS29560 -1.6 -0.9 hypothetical protein compare
PFLU_RS21795 -1.6 -10.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS01320 -1.6 -7.8 phosphoenolpyruvate carboxykinase compare
PFLU_RS03770 -1.6 -8.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS13090 -1.6 -3.7 DUF2797 domain-containing protein compare
PFLU_RS05655 -1.6 -3.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS29095 -1.6 -12.9 polyphosphate kinase 1 compare
PFLU_RS24930 -1.6 -2.4 hypothetical protein compare
PFLU_RS08670 -1.6 -6.0 heme lyase CcmF/NrfE family subunit compare
PFLU_RS26370 -1.6 -10.0 TIM barrel protein conserved
PFLU_RS31290 -1.6 -1.0 EamA family transporter compare
PFLU_RS18530 -1.6 -3.1 DNA translocase FtsK compare
PFLU_RS21835 -1.6 -9.1 flagellar hook-associated protein FlgK compare
PFLU_RS08410 -1.6 -5.7 HTH-type transcriptional regulator CysB compare
PFLU_RS23180 -1.6 -5.5 flagellar basal body rod protein FlgB compare
PFLU_RS11320 -1.6 -8.3 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS14545 -1.6 -1.3 hypothetical protein compare
PFLU_RS27380 -1.6 -9.1 anthranilate synthase component I compare
PFLU_RS16935 -1.6 -1.8 CoA ester lyase compare
PFLU_RS11225 -1.5 -2.3 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Quinic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source Quinic Acid across organisms