Experiment set27S405 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS20625 -4.7 -4.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS04465 -3.6 -11.5 ATP phosphoribosyltransferase compare
PFLU_RS23070 -3.4 -2.0 50S ribosomal protein L32 compare
PFLU_RS09220 -3.3 -10.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS24765 -3.3 -21.8 2-isopropylmalate synthase compare
PFLU_RS27685 -3.1 -17.2 malate synthase G compare
PFLU_RS22095 -3.1 -16.9 GTP diphosphokinase compare
PFLU_RS20510 -3.1 -14.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS04470 -3.0 -12.2 histidinol dehydrogenase compare
PFLU_RS07650 -3.0 -15.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25640 -3.0 -14.8 ketol-acid reductoisomerase compare
PFLU_RS18610 -3.0 -15.7 isocitrate lyase compare
PFLU_RS27605 -3.0 -22.7 acyl-CoA dehydrogenase conserved
PFLU_RS20580 -3.0 -14.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28695 -2.9 -9.8 phosphoglycerate dehydrogenase compare
PFLU_RS26020 -2.9 -14.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS20575 -2.9 -6.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28965 -2.9 -11.1 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS20565 -2.8 -15.3 3-isopropylmalate dehydrogenase compare
PFLU_RS12980 -2.8 -9.0 nitrite/sulfite reductase compare
PFLU_RS19170 -2.8 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS25360 -2.8 -9.1 glutamate 5-kinase compare
PFLU_RS22740 -2.8 -3.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS28535 -2.7 -15.9 dihydroxy-acid dehydratase compare
PFLU_RS28385 -2.7 -13.8 homoserine O-acetyltransferase compare
PFLU_RS27370 -2.7 -14.1 anthranilate phosphoribosyltransferase compare
PFLU_RS01900 -2.7 -8.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS23355 -2.7 -23.3 acetate--CoA ligase compare
PFLU_RS31490 -2.7 -2.0 hypothetical protein compare
PFLU_RS01620 -2.7 -9.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01605 -2.6 -8.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS25715 -2.6 -9.1 RNA polymerase-binding protein DksA compare
PFLU_RS26735 -2.6 -5.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS18675 -2.6 -1.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS28165 -2.5 -13.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS00180 -2.5 -8.1 tryptophan synthase subunit beta compare
PFLU_RS01995 -2.5 -11.1 malate dehydrogenase compare
PFLU_RS18505 -2.5 -9.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS28390 -2.5 -9.2 methionine biosynthesis protein MetW compare
PFLU_RS25750 -2.5 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS03970 -2.4 -10.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS29095 -2.4 -18.4 polyphosphate kinase 1 compare
PFLU_RS21935 -2.4 -16.2 sensor histidine kinase compare
PFLU_RS00175 -2.4 -8.6 tryptophan synthase subunit alpha compare
PFLU_RS15410 -2.4 -1.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS08660 -2.4 -4.1 heme exporter protein CcmD compare
PFLU_RS12975 -2.4 -5.5 DUF934 domain-containing protein compare
PFLU_RS18665 -2.3 -2.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS17265 -2.3 -3.2 hypothetical protein compare
PFLU_RS01610 -2.3 -11.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS20515 -2.2 -4.4 amidophosphoribosyltransferase compare
PFLU_RS02590 -2.2 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20540 -2.2 -11.0 phosphoribosylanthranilate isomerase compare
PFLU_RS08505 -2.2 -6.8 protease HtpX compare
PFLU_RS02490 -2.2 -11.3 phosphoserine phosphatase SerB compare
PFLU_RS07640 -2.2 -10.5 universal stress protein compare
PFLU_RS27365 -2.2 -9.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS10430 -2.1 -4.8 peptidase compare
PFLU_RS04930 -2.1 -12.0 PhoH family protein compare
PFLU_RS18530 -2.1 -4.2 DNA translocase FtsK compare
PFLU_RS25800 -2.1 -6.1 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS23680 -2.1 -13.5 long-chain fatty acid--CoA ligase compare
PFLU_RS13365 -2.1 -2.1 hypothetical protein compare
PFLU_RS23115 -2.1 -12.6 dicarboxylate/amino acid:cation symporter compare
PFLU_RS27475 -2.1 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS29760 -2.0 -10.0 phosphate ABC transporter permease PstA compare
PFLU_RS21060 -2.0 -4.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS24090 -2.0 -3.5 Holliday junction branch migration protein RuvA compare
PFLU_RS24025 -2.0 -10.2 quinolinate synthase NadA compare
PFLU_RS24085 -2.0 -3.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS00465 -2.0 -11.7 spore maturation protein compare
PFLU_RS30590 -2.0 -2.1 hypothetical protein compare
PFLU_RS18655 -1.9 -1.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS18725 -1.9 -2.3 alpha/beta hydrolase compare
PFLU_RS29735 -1.9 -10.1 HlyC/CorC family transporter compare
PFLU_RS15610 -1.9 -5.0 helix-turn-helix transcriptional regulator compare
PFLU_RS25645 -1.9 -2.8 acetolactate synthase small subunit compare
PFLU_RS01625 -1.9 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS21665 -1.8 -4.7 MinD/ParA family protein compare
PFLU_RS26905 -1.8 -8.6 transcriptional regulator NrdR compare
PFLU_RS23380 -1.8 -2.1 HAD-IB family hydrolase compare
PFLU_RS13065 -1.8 -6.2 ser/threonine protein phosphatase compare
PFLU_RS01645 -1.8 -7.4 S41 family peptidase compare
PFLU_RS29780 -1.8 -6.0 acyl-CoA thioesterase compare
PFLU_RS04715 -1.7 -4.4 D-alanine--D-alanine ligase compare
PFLU_RS04650 -1.7 -12.0 ABC transporter substrate-binding protein compare
PFLU_RS22395 -1.7 -5.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS25740 -1.7 -4.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS01965 -1.7 -1.2 ATP-dependent protease subunit HslV compare
PFLU_RS05910 -1.7 -2.2 response regulator transcription factor compare
PFLU_RS28655 -1.7 -10.9 HAD family hydrolase compare
PFLU_RS03240 -1.7 -10.6 copper-translocating P-type ATPase compare
PFLU_RS03645 -1.7 -6.7 tetratricopeptide repeat protein compare
PFLU_RS30345 -1.7 -2.5 DUF2559 family protein compare
PFLU_RS26635 -1.7 -4.1 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS31710 -1.7 -2.8 hypothetical protein compare
PFLU_RS04445 -1.7 -5.6 ABC transporter substrate-binding protein compare
PFLU_RS18615 -1.7 -1.1 NADH-quinone oxidoreductase subunit A compare
PFLU_RS28650 -1.7 -5.8 RNA pyrophosphohydrolase compare
PFLU_RS07665 -1.7 -3.1 type I DNA topoisomerase compare
PFLU_RS21425 -1.7 -3.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS08675 -1.6 -4.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS28645 -1.6 -9.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS09055 -1.6 -2.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS18620 -1.6 -3.1 NADH-quinone oxidoreductase subunit B compare
PFLU_RS18585 -1.6 -2.2 high frequency lysogenization protein HflD compare
PFLU_RS23065 -1.6 -7.8 phosphate acyltransferase PlsX compare
PFLU_RS18910 -1.6 -3.5 MarR family transcriptional regulator compare
PFLU_RS29890 -1.6 -7.3 transcriptional regulator HexR compare
PFLU_RS20690 -1.6 -3.1 hypothetical protein compare
PFLU_RS18625 -1.6 -3.9 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS15310 -1.6 -1.9 YgdI/YgdR family lipoprotein compare
PFLU_RS22620 -1.6 -7.8 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PFLU_RS06130 -1.5 -8.9 phosphoenolpyruvate carboxylase compare
PFLU_RS29750 -1.5 -5.3 phosphate signaling complex protein PhoU compare
PFLU_RS08165 -1.5 -2.0 acyl carrier protein compare
PFLU_RS09980 -1.5 -10.2 peptidase S41 compare
PFLU_RS07685 -1.5 -3.4 transcriptional repressor LexA compare
PFLU_RS22895 -1.5 -11.7 PLP-dependent aminotransferase family protein compare
PFLU_RS23730 -1.5 -9.4 MurR/RpiR family transcriptional regulator compare
PFLU_RS13665 -1.5 -1.4 MarR family transcriptional regulator compare
PFLU_RS30160 -1.5 -2.8 ParB/RepB/Spo0J family partition protein compare
PFLU_RS19165 -1.4 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS17545 -1.4 -1.1 DUF465 domain-containing protein compare
PFLU_RS04220 -1.4 -6.7 FadR family transcriptional regulator compare
PFLU_RS18645 -1.4 -1.5 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS22725 -1.4 -2.7 transcriptional regulator compare
PFLU_RS19175 -1.4 -5.5 trigger factor compare
PFLU_RS24205 -1.4 -1.6 DNA binding protein compare
PFLU_RS03765 -1.4 -7.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS22105 -1.4 -3.5 cysteine synthase CysM compare
PFLU_RS04660 -1.4 -5.4 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS24125 -1.4 -2.2 cold-shock protein compare
PFLU_RS08670 -1.4 -5.8 heme lyase CcmF/NrfE family subunit compare
PFLU_RS27620 -1.4 -10.5 acyl-CoA dehydrogenase compare
PFLU_RS03770 -1.4 -8.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS31615 -1.3 -3.5 hypothetical protein compare
PFLU_RS23310 -1.3 -6.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS02280 -1.3 -8.5 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS18635 -1.3 -2.3 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS26570 -1.3 -4.4 HlyC/CorC family transporter compare
PFLU_RS07525 -1.3 -1.6 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS02455 -1.3 -1.8 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS09305 -1.3 -9.0 hypothetical protein compare
PFLU_RS28465 -1.3 -7.6 insulinase family protein compare
PFLU_RS03100 -1.3 -1.4 hypothetical protein compare
PFLU_RS05630 -1.3 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS25755 -1.3 -0.9 pantoate--beta-alanine ligase compare
PFLU_RS14810 -1.3 -1.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS08370 -1.3 -3.5 hypothetical protein compare
PFLU_RS00415 -1.3 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS02825 -1.3 -1.7 phosphate starvation-inducible protein PsiF compare
PFLU_RS18420 -1.3 -2.4 hypothetical protein compare
PFLU_RS06815 -1.3 -6.1 TetR family transcriptional regulator compare
PFLU_RS18670 -1.3 -1.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS22605 -1.3 -5.2 mechanosensitive ion channel compare
PFLU_RS22070 -1.2 -2.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS09575 -1.2 -3.5 FadR family transcriptional regulator compare
PFLU_RS24000 -1.2 -8.8 aminomethyl-transferring glycine dehydrogenase compare
PFLU_RS04440 -1.2 -6.0 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS29550 -1.2 -5.8 ATP-dependent DNA helicase RecG compare
PFLU_RS22835 -1.2 -5.5 amidotransferase compare
PFLU_RS28690 -1.2 -8.4 FAD-binding oxidoreductase compare
PFLU_RS21360 -1.2 -2.0 MarR family transcriptional regulator compare
PFLU_RS03400 -1.2 -2.7 hypothetical protein compare
PFLU_RS13485 -1.2 -8.4 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS24145 -1.2 -3.8 mechanosensitive ion channel compare
PFLU_RS09535 -1.2 -1.4 TIGR03750 family conjugal transfer protein compare
PFLU_RS24095 -1.2 -1.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS02565 -1.2 -3.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS29215 -1.2 -6.5 response regulator transcription factor compare
PFLU_RS12635 -1.2 -1.8 conjugal transfer protein TraR compare
PFLU_RS28460 -1.2 -8.3 insulinase family protein compare
PFLU_RS04565 -1.2 -1.3 TMEM165/GDT1 family protein compare
PFLU_RS00310 -1.2 -1.4 twin transmembrane helix small protein compare
PFLU_RS02000 -1.2 -9.8 penicillin-binding protein 1A compare
PFLU_RS29875 -1.1 -8.3 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS06855 -1.1 -1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS18640 -1.1 -1.5 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS02625 -1.1 -7.6 ribonuclease R compare
PFLU_RS28325 -1.1 -4.2 energy transducer TonB compare
PFLU_RS26565 -1.1 -1.2 rRNA maturation RNase YbeY compare
PFLU_RS15065 -1.1 -3.2 IclR family transcriptional regulator compare
PFLU_RS21300 -1.1 -3.3 cysteine hydrolase compare
PFLU_RS14075 -1.1 -3.0 hypothetical protein compare
PFLU_RS03585 -1.1 -1.8 hypothetical protein compare
PFLU_RS14820 -1.1 -3.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS31215 -1.1 -2.1 hypothetical protein compare
PFLU_RS08065 -1.1 -5.2 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS28320 -1.1 -1.3 glutathione synthase compare
PFLU_RS01660 -1.1 -1.8 rhodanese-like domain-containing protein compare
PFLU_RS10575 -1.1 -6.0 acetyl-CoA C-acetyltransferase compare
PFLU_RS27440 -1.1 -4.2 nucleotidyltransferase family protein compare
PFLU_RS18395 -1.1 -1.0 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS29880 -1.1 -6.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS05235 -1.1 -5.7 leucyl aminopeptidase compare
PFLU_RS01315 -1.1 -2.4 Hsp33 family molecular chaperone HslO compare
PFLU_RS15005 -1.1 -1.0 hypothetical protein compare
PFLU_RS04385 -1.1 -5.3 RNase adapter RapZ compare
PFLU_RS23100 -1.1 -3.3 ribonuclease E compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium butyrate across organisms