Experiment set27S404 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS09220 -3.3 -10.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS25640 -3.2 -15.4 ketol-acid reductoisomerase compare
PFLU_RS20565 -3.2 -15.9 3-isopropylmalate dehydrogenase compare
PFLU_RS01620 -3.1 -9.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04465 -3.0 -11.2 ATP phosphoribosyltransferase compare
PFLU_RS22095 -3.0 -17.8 GTP diphosphokinase compare
PFLU_RS28695 -3.0 -10.2 phosphoglycerate dehydrogenase compare
PFLU_RS28535 -3.0 -17.6 dihydroxy-acid dehydratase compare
PFLU_RS09500 -3.0 -1.7 hypothetical protein compare
PFLU_RS07650 -2.9 -15.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25360 -2.9 -9.9 glutamate 5-kinase compare
PFLU_RS28390 -2.9 -12.6 methionine biosynthesis protein MetW compare
PFLU_RS20575 -2.9 -5.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27605 -2.9 -22.7 acyl-CoA dehydrogenase conserved
PFLU_RS20580 -2.8 -13.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS26020 -2.8 -14.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS18610 -2.8 -16.2 isocitrate lyase compare
PFLU_RS02590 -2.8 -10.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28165 -2.8 -13.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS23355 -2.7 -23.6 acetate--CoA ligase compare
PFLU_RS02490 -2.7 -14.0 phosphoserine phosphatase SerB compare
PFLU_RS27685 -2.7 -15.6 malate synthase G compare
PFLU_RS24765 -2.7 -20.1 2-isopropylmalate synthase compare
PFLU_RS20510 -2.7 -14.6 O-succinylhomoserine sulfhydrylase compare
PFLU_RS12975 -2.6 -5.4 DUF934 domain-containing protein compare
PFLU_RS29095 -2.6 -20.0 polyphosphate kinase 1 compare
PFLU_RS25715 -2.5 -10.5 RNA polymerase-binding protein DksA compare
PFLU_RS27370 -2.5 -13.2 anthranilate phosphoribosyltransferase compare
PFLU_RS20540 -2.5 -10.8 phosphoribosylanthranilate isomerase compare
PFLU_RS26735 -2.5 -5.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS28385 -2.5 -12.9 homoserine O-acetyltransferase compare
PFLU_RS15410 -2.5 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS01995 -2.5 -11.7 malate dehydrogenase compare
PFLU_RS01605 -2.5 -8.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01900 -2.4 -7.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28965 -2.4 -10.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS04930 -2.4 -13.4 PhoH family protein compare
PFLU_RS04470 -2.4 -12.1 histidinol dehydrogenase compare
PFLU_RS18665 -2.4 -2.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS29780 -2.3 -7.2 acyl-CoA thioesterase compare
PFLU_RS01610 -2.3 -11.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS19170 -2.3 -5.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS01625 -2.3 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS25750 -2.3 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS29760 -2.3 -10.6 phosphate ABC transporter permease PstA compare
PFLU_RS21935 -2.2 -15.5 sensor histidine kinase compare
PFLU_RS18505 -2.2 -9.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS19165 -2.2 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS27365 -2.1 -10.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS09055 -2.1 -3.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS18675 -2.1 -2.4 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS01895 -2.1 -7.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28650 -2.0 -6.5 RNA pyrophosphohydrolase compare
PFLU_RS22740 -2.0 -4.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS18655 -2.0 -1.3 NADH-quinone oxidoreductase subunit J compare
PFLU_RS12980 -2.0 -9.1 nitrite/sulfite reductase compare
PFLU_RS23065 -2.0 -10.0 phosphate acyltransferase PlsX compare
PFLU_RS26905 -2.0 -9.3 transcriptional regulator NrdR compare
PFLU_RS18635 -2.0 -1.9 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS01320 -1.9 -9.4 phosphoenolpyruvate carboxykinase compare
PFLU_RS06130 -1.9 -9.1 phosphoenolpyruvate carboxylase compare
PFLU_RS00175 -1.9 -8.5 tryptophan synthase subunit alpha compare
PFLU_RS25645 -1.9 -2.8 acetolactate synthase small subunit compare
PFLU_RS21665 -1.9 -4.8 MinD/ParA family protein compare
PFLU_RS22620 -1.9 -10.3 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PFLU_RS23380 -1.9 -2.3 HAD-IB family hydrolase compare
PFLU_RS20515 -1.8 -5.1 amidophosphoribosyltransferase compare
PFLU_RS08505 -1.8 -6.4 protease HtpX compare
PFLU_RS27475 -1.8 -4.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS00180 -1.8 -7.1 tryptophan synthase subunit beta compare
PFLU_RS00415 -1.8 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS09575 -1.8 -4.6 FadR family transcriptional regulator compare
PFLU_RS03765 -1.8 -8.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01965 -1.8 -1.2 ATP-dependent protease subunit HslV compare
PFLU_RS13065 -1.8 -6.0 ser/threonine protein phosphatase compare
PFLU_RS18530 -1.8 -4.7 DNA translocase FtsK compare
PFLU_RS04715 -1.8 -6.0 D-alanine--D-alanine ligase compare
PFLU_RS30345 -1.8 -3.1 DUF2559 family protein compare
PFLU_RS23680 -1.8 -11.8 long-chain fatty acid--CoA ligase compare
PFLU_RS18645 -1.8 -1.2 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS04650 -1.7 -12.2 ABC transporter substrate-binding protein compare
PFLU_RS01645 -1.7 -7.6 S41 family peptidase compare
PFLU_RS03240 -1.7 -10.7 copper-translocating P-type ATPase compare
PFLU_RS18670 -1.7 -1.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS18640 -1.7 -1.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS29735 -1.7 -8.5 HlyC/CorC family transporter compare
PFLU_RS25740 -1.7 -4.5 polynucleotide adenylyltransferase PcnB compare
PFLU_RS04835 -1.7 -1.8 hypothetical protein compare
PFLU_RS28645 -1.7 -10.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS03645 -1.6 -7.0 tetratricopeptide repeat protein compare
PFLU_RS18625 -1.6 -4.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS24025 -1.6 -9.3 quinolinate synthase NadA compare
PFLU_RS00465 -1.6 -10.1 spore maturation protein compare
PFLU_RS09980 -1.6 -11.6 peptidase S41 compare
PFLU_RS25800 -1.6 -6.0 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS08675 -1.6 -4.1 DsbE family thiol:disulfide interchange protein compare
PFLU_RS07640 -1.6 -8.2 universal stress protein compare
PFLU_RS26635 -1.6 -4.6 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS06815 -1.6 -7.7 TetR family transcriptional regulator compare
PFLU_RS23115 -1.6 -10.8 dicarboxylate/amino acid:cation symporter compare
PFLU_RS03970 -1.6 -8.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS07665 -1.6 -2.5 type I DNA topoisomerase compare
PFLU_RS03555 -1.6 -0.9 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS20290 -1.5 -1.8 integration host factor subunit alpha compare
PFLU_RS19175 -1.5 -6.2 trigger factor compare
PFLU_RS08650 -1.5 -2.6 heme exporter protein CcmB compare
PFLU_RS24590 -1.5 -3.6 cytochrome c assembly protein compare
PFLU_RS21060 -1.5 -3.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS10430 -1.5 -3.8 peptidase compare
PFLU_RS23310 -1.5 -7.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS15610 -1.5 -4.5 helix-turn-helix transcriptional regulator compare
PFLU_RS02280 -1.5 -9.4 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS24095 -1.5 -2.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS20625 -1.5 -1.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS28655 -1.5 -9.2 HAD family hydrolase compare
PFLU_RS26835 -1.4 -3.1 exodeoxyribonuclease VII small subunit compare
PFLU_RS08665 -1.4 -4.1 cytochrome c maturation protein CcmE compare
PFLU_RS22725 -1.4 -2.8 transcriptional regulator compare
PFLU_RS02625 -1.4 -9.5 ribonuclease R compare
PFLU_RS24205 -1.4 -1.6 DNA binding protein compare
PFLU_RS22105 -1.4 -3.8 cysteine synthase CysM compare
PFLU_RS05750 -1.4 -2.1 methionine--tRNA ligase compare
PFLU_RS29885 -1.4 -7.5 LysR family transcriptional regulator compare
PFLU_RS22070 -1.4 -2.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS13945 -1.4 -2.4 hypothetical protein compare
PFLU_RS03770 -1.4 -8.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS24125 -1.4 -2.0 cold-shock protein compare
PFLU_RS22600 -1.4 -2.1 RNA polymerase sigma factor SigX compare
PFLU_RS04220 -1.4 -6.4 FadR family transcriptional regulator compare
PFLU_RS08670 -1.4 -5.5 heme lyase CcmF/NrfE family subunit compare
PFLU_RS09845 -1.4 -2.4 biotin carboxyl carrier domain-containing protein compare
PFLU_RS29890 -1.4 -5.8 transcriptional regulator HexR compare
PFLU_RS08765 -1.3 -3.0 phosphonate C-P lyase system protein PhnH compare
PFLU_RS29550 -1.3 -5.8 ATP-dependent DNA helicase RecG compare
PFLU_RS02565 -1.3 -3.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS29750 -1.3 -5.0 phosphate signaling complex protein PhoU compare
PFLU_RS29880 -1.3 -8.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS13825 -1.3 -2.0 hypothetical protein compare
PFLU_RS23730 -1.3 -8.3 MurR/RpiR family transcriptional regulator compare
PFLU_RS29290 -1.3 -3.2 hypothetical protein compare
PFLU_RS08160 -1.3 -5.9 sugar transferase compare
PFLU_RS22895 -1.3 -10.4 PLP-dependent aminotransferase family protein compare
PFLU_RS03075 -1.3 -1.3 translation initiation factor Sui1 compare
PFLU_RS08165 -1.3 -1.5 acyl carrier protein compare
PFLU_RS26545 -1.3 -6.5 sel1 repeat family protein compare
PFLU_RS07910 -1.3 -1.3 type 1 fimbrial protein compare
PFLU_RS10660 -1.3 -2.9 DUF1652 domain-containing protein compare
PFLU_RS19160 -1.3 -7.3 endopeptidase La compare
PFLU_RS15310 -1.3 -2.4 YgdI/YgdR family lipoprotein compare
PFLU_RS22395 -1.3 -4.5 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS14440 -1.3 -1.5 hypothetical protein compare
PFLU_RS04385 -1.2 -6.3 RNase adapter RapZ compare
PFLU_RS19120 -1.2 -3.2 MarR family transcriptional regulator compare
PFLU_RS18620 -1.2 -2.0 NADH-quinone oxidoreductase subunit B compare
PFLU_RS02365 -1.2 -7.2 glycosyltransferase compare
PFLU_RS19555 -1.2 -1.3 histidine phosphatase family protein compare
PFLU_RS28690 -1.2 -8.2 FAD-binding oxidoreductase compare
PFLU_RS02000 -1.2 -10.4 penicillin-binding protein 1A compare
PFLU_RS13975 -1.2 -1.3 hypothetical protein compare
PFLU_RS13010 -1.2 -3.3 Fe-S biogenesis protein NfuA compare
PFLU_RS25925 -1.2 -1.6 RnfH family protein compare
PFLU_RS17060 -1.2 -1.8 monooxygenase compare
PFLU_RS09305 -1.2 -8.4 hypothetical protein compare
PFLU_RS28325 -1.2 -4.4 energy transducer TonB compare
PFLU_RS14805 -1.2 -1.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS07685 -1.2 -3.5 transcriptional repressor LexA compare
PFLU_RS29215 -1.2 -7.0 response regulator transcription factor compare
PFLU_RS14210 -1.2 -2.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS24000 -1.2 -8.4 aminomethyl-transferring glycine dehydrogenase compare
PFLU_RS26570 -1.2 -3.8 HlyC/CorC family transporter compare
PFLU_RS29875 -1.1 -8.3 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS07695 -1.1 -2.0 beta-N-acetylhexosaminidase compare
PFLU_RS24090 -1.1 -2.7 Holliday junction branch migration protein RuvA compare
PFLU_RS27620 -1.1 -9.0 acyl-CoA dehydrogenase compare
PFLU_RS04660 -1.1 -4.0 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS22835 -1.1 -5.8 amidotransferase compare
PFLU_RS19550 -1.1 -1.0 ABC transporter ATP-binding protein compare
PFLU_RS23920 -1.1 -2.0 septation protein A compare
PFLU_RS04430 -1.1 -4.9 ATP-binding cassette domain-containing protein compare
PFLU_RS04015 -1.1 -2.4 1-phosphofructokinase compare
PFLU_RS21425 -1.1 -2.9 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS10405 -1.1 -2.8 helix-turn-helix transcriptional regulator compare
PFLU_RS15745 -1.1 -2.2 type II secretion system ATPase GspE compare
PFLU_RS30365 -1.1 -3.5 hypothetical protein compare
PFLU_RS05910 -1.1 -1.4 response regulator transcription factor compare
PFLU_RS23360 -1.1 -4.3 DUF2790 domain-containing protein conserved
PFLU_RS01960 -1.1 -0.7 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS01095 -1.1 -3.1 ribbon-helix-helix protein, CopG family compare
PFLU_RS13365 -1.1 -1.1 hypothetical protein compare
PFLU_RS07380 -1.0 -4.3 LysR family transcriptional regulator compare
PFLU_RS18055 -1.0 -1.1 hydrolase compare
PFLU_RS07785 -1.0 -5.9 VacJ family lipoprotein compare
PFLU_RS25755 -1.0 -1.5 pantoate--beta-alanine ligase compare
PFLU_RS18395 -1.0 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS28465 -1.0 -7.1 insulinase family protein compare
PFLU_RS12220 -1.0 -2.4 AraC family transcriptional regulator compare
PFLU_RS26290 -1.0 -0.9 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS17750 -1.0 -2.2 pirin family protein compare
PFLU_RS11930 -1.0 -1.6 biopolymer transporter ExbD compare
PFLU_RS02790 -1.0 -1.1 TetR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium butyrate across organisms