Experiment set27S403 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS14805 -3.8 -2.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS09220 -3.0 -10.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS12975 -2.9 -5.5 DUF934 domain-containing protein compare
PFLU_RS14775 -2.9 -2.6 enoyl-CoA hydratase compare
PFLU_RS01625 -2.8 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28695 -2.8 -8.3 phosphoglycerate dehydrogenase compare
PFLU_RS12980 -2.7 -9.9 nitrite/sulfite reductase compare
PFLU_RS20575 -2.7 -6.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS18675 -2.6 -1.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS07650 -2.6 -13.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS18700 -2.6 -3.3 hypothetical protein compare
PFLU_RS19170 -2.5 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS01620 -2.5 -9.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS22095 -2.5 -16.6 GTP diphosphokinase compare
PFLU_RS25645 -2.5 -2.9 acetolactate synthase small subunit compare
PFLU_RS18665 -2.5 -1.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS26020 -2.5 -13.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS28535 -2.5 -14.6 dihydroxy-acid dehydratase compare
PFLU_RS08655 -2.5 -5.2 heme ABC transporter permease compare
PFLU_RS04465 -2.5 -9.1 ATP phosphoribosyltransferase compare
PFLU_RS28165 -2.4 -13.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08650 -2.4 -3.2 heme exporter protein CcmB compare
PFLU_RS25640 -2.4 -13.2 ketol-acid reductoisomerase compare
PFLU_RS20625 -2.4 -4.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS18610 -2.4 -14.4 isocitrate lyase compare
PFLU_RS23355 -2.4 -20.7 acetate--CoA ligase compare
PFLU_RS04470 -2.4 -11.6 histidinol dehydrogenase compare
PFLU_RS18505 -2.4 -9.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24765 -2.4 -17.3 2-isopropylmalate synthase compare
PFLU_RS30345 -2.4 -3.5 DUF2559 family protein compare
PFLU_RS01900 -2.4 -7.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS25715 -2.4 -10.3 RNA polymerase-binding protein DksA compare
PFLU_RS08675 -2.4 -5.2 DsbE family thiol:disulfide interchange protein compare
PFLU_RS20580 -2.3 -12.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -2.3 -13.4 3-isopropylmalate dehydrogenase compare
PFLU_RS21935 -2.3 -14.9 sensor histidine kinase compare
PFLU_RS27605 -2.3 -18.0 acyl-CoA dehydrogenase conserved
PFLU_RS20515 -2.3 -4.5 amidophosphoribosyltransferase compare
PFLU_RS27685 -2.3 -13.5 malate synthase G compare
PFLU_RS20540 -2.2 -11.3 phosphoribosylanthranilate isomerase compare
PFLU_RS27370 -2.2 -11.1 anthranilate phosphoribosyltransferase compare
PFLU_RS20510 -2.2 -11.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01995 -2.2 -11.8 malate dehydrogenase compare
PFLU_RS01610 -2.2 -11.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS04715 -2.2 -5.7 D-alanine--D-alanine ligase compare
PFLU_RS21915 -2.2 -5.8 MarR family transcriptional regulator compare
PFLU_RS02590 -2.1 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS22740 -2.1 -3.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS25750 -2.1 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS07640 -2.1 -10.3 universal stress protein compare
PFLU_RS19165 -2.1 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS25360 -2.1 -7.4 glutamate 5-kinase compare
PFLU_RS02490 -2.1 -10.2 phosphoserine phosphatase SerB compare
PFLU_RS25740 -2.1 -4.9 polynucleotide adenylyltransferase PcnB compare
PFLU_RS28650 -2.1 -6.5 RNA pyrophosphohydrolase compare
PFLU_RS29095 -2.1 -16.3 polyphosphate kinase 1 compare
PFLU_RS18420 -2.1 -2.6 hypothetical protein compare
PFLU_RS26905 -2.1 -10.2 transcriptional regulator NrdR compare
PFLU_RS13065 -2.0 -7.3 ser/threonine protein phosphatase compare
PFLU_RS28385 -2.0 -9.9 homoserine O-acetyltransferase compare
PFLU_RS08505 -2.0 -6.8 protease HtpX compare
PFLU_RS15410 -2.0 -2.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS23680 -2.0 -12.3 long-chain fatty acid--CoA ligase compare
PFLU_RS09055 -2.0 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS10660 -1.9 -2.9 DUF1652 domain-containing protein compare
PFLU_RS18670 -1.9 -1.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS23380 -1.9 -2.1 HAD-IB family hydrolase compare
PFLU_RS18635 -1.9 -2.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS28965 -1.9 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS28390 -1.9 -7.2 methionine biosynthesis protein MetW compare
PFLU_RS15610 -1.9 -5.1 helix-turn-helix transcriptional regulator compare
PFLU_RS21060 -1.9 -3.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS24025 -1.8 -8.9 quinolinate synthase NadA compare
PFLU_RS18015 -1.8 -3.1 energy transducer TonB compare
PFLU_RS05910 -1.8 -2.3 response regulator transcription factor compare
PFLU_RS21665 -1.8 -4.6 MinD/ParA family protein compare
PFLU_RS29890 -1.8 -6.9 transcriptional regulator HexR compare
PFLU_RS31290 -1.8 -1.9 EamA family transporter compare
PFLU_RS01605 -1.8 -7.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS02775 -1.8 -1.9 urease accessory protein UreF compare
PFLU_RS23115 -1.8 -10.9 dicarboxylate/amino acid:cation symporter compare
PFLU_RS04565 -1.7 -1.8 TMEM165/GDT1 family protein compare
PFLU_RS27475 -1.7 -5.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS27365 -1.7 -7.8 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS04930 -1.7 -9.4 PhoH family protein compare
PFLU_RS19175 -1.7 -7.0 trigger factor compare
PFLU_RS18735 -1.7 -2.2 hypothetical protein compare
PFLU_RS06130 -1.7 -8.5 phosphoenolpyruvate carboxylase compare
PFLU_RS23920 -1.7 -2.1 septation protein A compare
PFLU_RS29760 -1.7 -8.8 phosphate ABC transporter permease PstA compare
PFLU_RS03765 -1.7 -8.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS03970 -1.7 -8.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS26635 -1.7 -4.5 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS13795 -1.7 -2.1 hypothetical protein compare
PFLU_RS12175 -1.6 -1.1 methyl-accepting chemotaxis protein compare
PFLU_RS03240 -1.6 -9.6 copper-translocating P-type ATPase compare
PFLU_RS08665 -1.6 -3.8 cytochrome c maturation protein CcmE compare
PFLU_RS22620 -1.6 -7.3 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PFLU_RS18625 -1.6 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS00175 -1.6 -7.5 tryptophan synthase subunit alpha compare
PFLU_RS20290 -1.6 -1.6 integration host factor subunit alpha compare
PFLU_RS07685 -1.6 -3.8 transcriptional repressor LexA compare
PFLU_RS09980 -1.6 -10.8 peptidase S41 compare
PFLU_RS24790 -1.6 -4.1 tetratricopeptide repeat protein compare
PFLU_RS03555 -1.5 -0.8 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS13665 -1.5 -1.4 MarR family transcriptional regulator compare
PFLU_RS13540 -1.5 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS00465 -1.5 -9.3 spore maturation protein compare
PFLU_RS23065 -1.5 -7.8 phosphate acyltransferase PlsX compare
PFLU_RS00180 -1.5 -6.0 tryptophan synthase subunit beta compare
PFLU_RS30730 -1.5 -2.9 helix-turn-helix domain-containing protein compare
PFLU_RS29735 -1.5 -8.6 HlyC/CorC family transporter compare
PFLU_RS21985 -1.5 -3.9 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS28645 -1.5 -8.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28655 -1.5 -9.7 HAD family hydrolase compare
PFLU_RS04650 -1.5 -9.9 ABC transporter substrate-binding protein compare
PFLU_RS18615 -1.5 -1.4 NADH-quinone oxidoreductase subunit A compare
PFLU_RS25800 -1.5 -5.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS22895 -1.5 -12.1 PLP-dependent aminotransferase family protein compare
PFLU_RS18620 -1.5 -3.1 NADH-quinone oxidoreductase subunit B compare
PFLU_RS04430 -1.5 -6.0 ATP-binding cassette domain-containing protein compare
PFLU_RS13370 -1.5 -0.9 DUF2790 domain-containing protein compare
PFLU_RS08660 -1.4 -2.9 heme exporter protein CcmD compare
PFLU_RS01285 -1.4 -1.6 HAMP domain-containing protein compare
PFLU_RS28690 -1.4 -9.3 FAD-binding oxidoreductase compare
PFLU_RS02670 -1.4 -4.3 hypothetical protein compare
PFLU_RS26735 -1.4 -5.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS25955 -1.4 -1.3 hypothetical protein compare
PFLU_RS13945 -1.4 -1.9 hypothetical protein compare
PFLU_RS02565 -1.4 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS14810 -1.4 -1.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS00415 -1.4 -1.5 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS18910 -1.4 -3.0 MarR family transcriptional regulator compare
PFLU_RS20690 -1.4 -3.2 hypothetical protein compare
PFLU_RS21215 -1.4 -2.0 YheU family protein compare
PFLU_RS31435 -1.3 -4.4 ABC transporter ATP-binding protein compare
PFLU_RS06855 -1.3 -2.4 helix-turn-helix transcriptional regulator compare
PFLU_RS24125 -1.3 -2.1 cold-shock protein compare
PFLU_RS03645 -1.3 -6.3 tetratricopeptide repeat protein compare
PFLU_RS08760 -1.3 -1.9 phosphonate C-P lyase system protein PhnG compare
PFLU_RS30165 -1.3 -5.8 ParA family protein compare
PFLU_RS17545 -1.3 -1.1 DUF465 domain-containing protein compare
PFLU_RS18640 -1.3 -1.2 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS21690 -1.3 -2.7 DNA-binding protein compare
PFLU_RS23070 -1.3 -1.1 50S ribosomal protein L32 compare
PFLU_RS08670 -1.3 -5.6 heme lyase CcmF/NrfE family subunit compare
PFLU_RS20390 -1.3 -2.8 DUF1654 domain-containing protein compare
PFLU_RS06815 -1.3 -5.6 TetR family transcriptional regulator compare
PFLU_RS31065 -1.3 -2.5 helix-turn-helix domain-containing protein compare
PFLU_RS29215 -1.2 -7.7 response regulator transcription factor compare
PFLU_RS23310 -1.2 -5.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS01895 -1.2 -5.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01645 -1.2 -6.6 S41 family peptidase compare
PFLU_RS27620 -1.2 -9.2 acyl-CoA dehydrogenase compare
PFLU_RS23460 -1.2 -2.4 antibiotic biosynthesis monooxygenase compare
PFLU_RS22395 -1.2 -3.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS08165 -1.2 -2.5 acyl carrier protein compare
PFLU_RS23240 -1.2 -7.1 magnesium transporter compare
PFLU_RS29975 -1.2 -1.8 ATP-binding cassette domain-containing protein compare
PFLU_RS24205 -1.2 -1.3 DNA binding protein compare
PFLU_RS05340 -1.2 -2.0 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS26565 -1.2 -0.9 rRNA maturation RNase YbeY compare
PFLU_RS02690 -1.2 -1.5 hypothetical protein compare
PFLU_RS04660 -1.2 -3.9 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS02280 -1.2 -7.5 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS22070 -1.2 -2.1 phosphoribosylglycinamide formyltransferase compare
PFLU_RS29885 -1.2 -6.6 LysR family transcriptional regulator compare
PFLU_RS30590 -1.2 -1.5 hypothetical protein compare
PFLU_RS22105 -1.2 -3.0 cysteine synthase CysM compare
PFLU_RS09575 -1.2 -2.4 FadR family transcriptional regulator compare
PFLU_RS04445 -1.2 -4.4 ABC transporter substrate-binding protein compare
PFLU_RS10430 -1.1 -2.4 peptidase compare
PFLU_RS21360 -1.1 -1.6 MarR family transcriptional regulator compare
PFLU_RS24090 -1.1 -3.0 Holliday junction branch migration protein RuvA compare
PFLU_RS28210 -1.1 -1.9 RidA family protein compare
PFLU_RS19665 -1.1 -0.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS10575 -1.1 -5.3 acetyl-CoA C-acetyltransferase compare
PFLU_RS16710 -1.1 -2.5 nitrite reductase small subunit NirD compare
PFLU_RS08160 -1.1 -5.5 sugar transferase compare
PFLU_RS26835 -1.1 -2.1 exodeoxyribonuclease VII small subunit compare
PFLU_RS27465 -1.1 -3.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS24900 -1.1 -3.0 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS04070 -1.1 -0.8 peptide chain release factor 3 compare
PFLU_RS23730 -1.1 -7.0 MurR/RpiR family transcriptional regulator compare
PFLU_RS13875 -1.1 -4.4 ImmA/IrrE family metallo-endopeptidase compare
PFLU_RS27440 -1.1 -4.3 nucleotidyltransferase family protein compare
PFLU_RS26545 -1.1 -5.8 sel1 repeat family protein compare
PFLU_RS13485 -1.1 -7.0 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS29875 -1.1 -7.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS25920 -1.1 -2.1 outer membrane protein assembly factor BamE compare
PFLU_RS02365 -1.1 -5.8 glycosyltransferase compare
PFLU_RS23360 -1.1 -3.3 DUF2790 domain-containing protein conserved
PFLU_RS18530 -1.1 -3.2 DNA translocase FtsK compare
PFLU_RS29880 -1.1 -7.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS13895 -1.1 -1.4 helix-turn-helix transcriptional regulator compare
PFLU_RS17580 -1.1 -1.5 repressor LexA compare
PFLU_RS29560 -1.0 -1.3 hypothetical protein compare
PFLU_RS16310 -1.0 -1.6 hypothetical protein compare
PFLU_RS01960 -1.0 -0.7 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS08990 -1.0 -1.9 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium butyrate across organisms