Experiment set27S398 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS28695 -5.4 -6.5 phosphoglycerate dehydrogenase compare
PFLU_RS27365 -5.1 -9.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS27370 -5.0 -10.2 anthranilate phosphoribosyltransferase compare
PFLU_RS06055 -5.0 -2.9 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS20575 -4.6 -5.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20580 -4.6 -9.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28535 -4.6 -14.7 dihydroxy-acid dehydratase compare
PFLU_RS28385 -4.5 -13.8 homoserine O-acetyltransferase compare
PFLU_RS28390 -4.5 -11.1 methionine biosynthesis protein MetW compare
PFLU_RS29515 -4.4 -12.8 RidA family protein compare
PFLU_RS04465 -4.4 -10.2 ATP phosphoribosyltransferase compare
PFLU_RS03970 -4.4 -11.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20510 -4.4 -12.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24765 -4.3 -22.5 2-isopropylmalate synthase compare
PFLU_RS20565 -4.3 -13.3 3-isopropylmalate dehydrogenase compare
PFLU_RS12975 -4.3 -4.2 DUF934 domain-containing protein compare
PFLU_RS02490 -4.2 -15.6 phosphoserine phosphatase SerB compare
PFLU_RS23065 -4.2 -9.6 phosphate acyltransferase PlsX compare
PFLU_RS25640 -4.1 -13.4 ketol-acid reductoisomerase compare
PFLU_RS02590 -4.1 -9.6 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20540 -4.1 -9.6 phosphoribosylanthranilate isomerase compare
PFLU_RS01895 -4.1 -7.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS23115 -3.9 -18.2 dicarboxylate/amino acid:cation symporter compare
PFLU_RS25360 -3.9 -8.6 glutamate 5-kinase compare
PFLU_RS00180 -3.8 -6.4 tryptophan synthase subunit beta compare
PFLU_RS01900 -3.8 -6.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01605 -3.8 -7.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24025 -3.7 -13.9 quinolinate synthase NadA compare
PFLU_RS04470 -3.7 -10.8 histidinol dehydrogenase compare
PFLU_RS01610 -3.7 -9.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS00175 -3.6 -5.6 tryptophan synthase subunit alpha compare
PFLU_RS12980 -3.6 -7.6 nitrite/sulfite reductase compare
PFLU_RS28655 -3.6 -11.3 HAD family hydrolase compare
PFLU_RS28165 -3.6 -12.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS23070 -3.5 -1.9 50S ribosomal protein L32 compare
PFLU_RS28420 -3.5 -12.1 thiazole synthase compare
PFLU_RS07255 -3.3 -6.3 sulfurtransferase TusA family protein compare
PFLU_RS01620 -3.3 -8.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS03665 -3.3 -5.9 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS18505 -3.3 -7.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01400 -3.3 -15.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS26535 -3.2 -8.8 thiamine phosphate synthase compare
PFLU_RS20515 -3.1 -2.1 amidophosphoribosyltransferase compare
PFLU_RS25750 -3.1 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS08410 -3.1 -11.8 HTH-type transcriptional regulator CysB compare
PFLU_RS02430 -3.0 -18.0 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS22740 -3.0 -2.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS23205 -2.8 -12.1 flagellar protein FlgN compare
PFLU_RS26530 -2.8 -15.7 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS13035 -2.8 -4.2 cobalamin biosynthesis protein CobW compare
PFLU_RS23305 -2.8 -11.5 arginine N-succinyltransferase compare
PFLU_RS23310 -2.8 -9.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS27650 -2.7 -16.1 biotin synthase BioB compare
PFLU_RS25645 -2.6 -2.5 acetolactate synthase small subunit compare
PFLU_RS29095 -2.6 -20.9 polyphosphate kinase 1 compare
PFLU_RS03770 -2.6 -14.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS23380 -2.6 -1.7 HAD-IB family hydrolase compare
PFLU_RS01625 -2.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS21820 -2.4 -12.3 flagellin compare
PFLU_RS22070 -2.3 -2.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS05050 -2.3 -1.8 response regulator transcription factor compare
PFLU_RS07225 -2.3 -15.4 L-aspartate oxidase compare
PFLU_RS13120 -2.3 -2.1 hypothetical protein compare
PFLU_RS01320 -2.3 -9.7 phosphoenolpyruvate carboxykinase compare
PFLU_RS02990 -2.3 -6.6 precorrin-3B C(17)-methyltransferase compare
PFLU_RS21830 -2.3 -17.3 flagellar hook-associated protein 3 compare
PFLU_RS03765 -2.3 -10.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS24085 -2.3 -3.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS21780 -2.3 -4.2 flagellar hook-basal body complex protein FliE compare
PFLU_RS21805 -2.3 -12.7 flagellar export chaperone FliS compare
PFLU_RS20660 -2.2 -11.8 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS11980 -2.2 -6.2 precorrin-6A synthase (deacetylating) compare
PFLU_RS21810 -2.2 -16.0 flagellar filament capping protein FliD compare
PFLU_RS28195 -2.1 -14.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS27645 -2.1 -13.3 8-amino-7-oxononanoate synthase compare
PFLU_RS09055 -2.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS21990 -2.1 -8.3 alpha-ribazole phosphatase family protein compare
PFLU_RS22105 -2.1 -3.2 cysteine synthase CysM compare
PFLU_RS27635 -2.1 -10.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS21760 -2.1 -10.5 flagellar protein export ATPase FliI compare
PFLU_RS27630 -2.1 -6.4 dethiobiotin synthase compare
PFLU_RS28965 -2.1 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS21755 -2.1 -7.6 flagella biosynthesis chaperone FliJ compare
PFLU_RS23180 -2.1 -8.8 flagellar basal body rod protein FlgB compare
PFLU_RS02975 -2.1 -8.7 precorrin-3B synthase compare
PFLU_RS13540 -2.1 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS00415 -2.1 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS04140 -2.0 -2.7 response regulator transcription factor compare
PFLU_RS23175 -2.0 -6.1 flagellar basal body rod protein FlgC compare
PFLU_RS01995 -2.0 -11.1 malate dehydrogenase compare
PFLU_RS21735 -2.0 -9.5 flagellar hook-length control protein FliK compare
PFLU_RS21860 -2.0 -8.5 flagellar basal body rod protein FlgF compare
PFLU_RS13050 -2.0 -6.1 VWA domain-containing protein compare
PFLU_RS21835 -2.0 -13.1 flagellar hook-associated protein FlgK compare
PFLU_RS18735 -2.0 -2.3 hypothetical protein compare
PFLU_RS23195 -2.0 -11.9 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS21855 -1.9 -8.6 flagellar basal-body rod protein FlgG compare
PFLU_RS23165 -1.9 -14.4 flagellar hook protein FlgE compare
PFLU_RS21710 -1.9 -5.5 flagellar type III secretion system pore protein FliP compare
PFLU_RS08665 -1.9 -4.9 cytochrome c maturation protein CcmE compare
PFLU_RS21705 -1.9 -8.0 flagellar biosynthesis protein FliQ compare
PFLU_RS21665 -1.9 -5.3 MinD/ParA family protein compare
PFLU_RS07665 -1.9 -3.7 type I DNA topoisomerase compare
PFLU_RS21695 -1.9 -6.0 flagellar biosynthesis protein FlhB compare
PFLU_RS05020 -1.9 -2.0 DUF1120 domain-containing protein compare
PFLU_RS13045 -1.9 -5.7 AAA domain-containing protein compare
PFLU_RS23185 -1.9 -11.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS21985 -1.8 -4.1 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS25800 -1.8 -6.1 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS20290 -1.8 -2.5 integration host factor subunit alpha compare
PFLU_RS13000 -1.8 -11.6 methionine synthase compare
PFLU_RS27640 -1.8 -2.0 alpha/beta fold hydrolase compare
PFLU_RS21850 -1.8 -10.1 flagellar basal body L-ring protein FlgH compare
PFLU_RS22735 -1.8 -8.7 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS21995 -1.8 -3.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS22010 -1.8 -6.7 threonine-phosphate decarboxylase compare
PFLU_RS01965 -1.8 -1.2 ATP-dependent protease subunit HslV compare
PFLU_RS00190 -1.8 -2.4 DUF883 domain-containing protein compare
PFLU_RS22095 -1.8 -13.3 GTP diphosphokinase compare
PFLU_RS26635 -1.8 -4.5 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS04475 -1.8 -9.9 histidinol-phosphate transaminase compare
PFLU_RS21765 -1.8 -5.0 flagellar assembly protein FliH compare
PFLU_RS12635 -1.8 -2.3 conjugal transfer protein TraR compare
PFLU_RS02970 -1.8 -6.5 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS02965 -1.8 -8.9 cobalt-precorrin-6A reductase compare
PFLU_RS21660 -1.7 -8.9 RNA polymerase sigma factor FliA compare
PFLU_RS21845 -1.7 -6.1 flagellar basal body P-ring protein FlgI compare
PFLU_RS05890 -1.7 -1.2 recombination regulator RecX compare
PFLU_RS21670 -1.7 -9.2 flagellar biosynthesis protein FlhF compare
PFLU_RS01405 -1.7 -7.8 sensor histidine kinase compare
PFLU_RS24095 -1.7 -2.2 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS22005 -1.7 -9.3 cobyric acid synthase compare
PFLU_RS21725 -1.7 -5.3 flagellar motor switch protein FliM compare
PFLU_RS30345 -1.7 -2.6 DUF2559 family protein compare
PFLU_RS18665 -1.7 -3.2 NADH-quinone oxidoreductase subunit L compare
PFLU_RS19170 -1.7 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS02565 -1.7 -3.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS18700 -1.6 -2.3 hypothetical protein compare
PFLU_RS31185 -1.6 -5.0 hypothetical protein compare
PFLU_RS21675 -1.6 -11.5 flagellar biosynthesis protein FlhA compare
PFLU_RS21615 -1.6 -7.3 chemotaxis protein CheW compare
PFLU_RS21795 -1.6 -11.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS21775 -1.6 -8.3 flagellar basal body M-ring protein FliF compare
PFLU_RS18530 -1.6 -4.4 DNA translocase FtsK compare
PFLU_RS13015 -1.6 -4.7 precorrin-4 C(11)-methyltransferase compare
PFLU_RS27380 -1.6 -8.3 anthranilate synthase component I compare
PFLU_RS21770 -1.6 -6.3 flagellar motor switch protein FliG compare
PFLU_RS29900 -1.6 -9.6 DNA helicase II compare
PFLU_RS02670 -1.6 -4.4 hypothetical protein compare
PFLU_RS02355 -1.5 -5.0 GNAT family N-acetyltransferase compare
PFLU_RS26640 -1.5 -7.1 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS26905 -1.5 -7.6 transcriptional regulator NrdR compare
PFLU_RS24090 -1.5 -2.9 Holliday junction branch migration protein RuvA compare
PFLU_RS02985 -1.5 -9.3 precorrin-2 C(20)-methyltransferase compare
PFLU_RS13040 -1.5 -9.7 cobaltochelatase subunit CobN compare
PFLU_RS08670 -1.5 -6.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS13895 -1.5 -1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS25715 -1.5 -8.3 RNA polymerase-binding protein DksA compare
PFLU_RS04565 -1.5 -1.6 TMEM165/GDT1 family protein compare
PFLU_RS22025 -1.5 -9.8 cobyrinate a,c-diamide synthase compare
PFLU_RS23100 -1.5 -3.6 ribonuclease E compare
PFLU_RS21700 -1.5 -5.9 flagellar type III secretion system protein FliR compare
PFLU_RS18675 -1.5 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS05540 -1.5 -10.1 LysR family transcriptional regulator conserved
PFLU_RS26565 -1.5 -1.5 rRNA maturation RNase YbeY compare
PFLU_RS22015 -1.5 -8.3 cobalamin biosynthesis protein compare
PFLU_RS05720 -1.4 -8.3 OmpA family protein compare
PFLU_RS30165 -1.4 -7.2 ParA family protein compare
PFLU_RS14550 -1.4 -5.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS31440 -1.4 -1.6 hypothetical protein compare
PFLU_RS26490 -1.4 -3.1 cation diffusion facilitator family transporter compare
PFLU_RS24125 -1.4 -2.3 cold-shock protein compare
PFLU_RS04455 -1.4 -4.9 BolA family transcriptional regulator compare
PFLU_RS18670 -1.4 -1.7 NADH-quinone oxidoreductase subunit M compare
PFLU_RS05630 -1.4 -2.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS13010 -1.4 -3.7 Fe-S biogenesis protein NfuA compare
PFLU_RS14715 -1.4 -6.2 protein-glutamate O-methyltransferase CheR compare
PFLU_RS04780 -1.4 -2.1 hypothetical protein compare
PFLU_RS30160 -1.4 -2.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS08655 -1.4 -3.6 heme ABC transporter permease compare
PFLU_RS30170 -1.4 -4.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
PFLU_RS15795 -1.4 -1.5 hypothetical protein compare
PFLU_RS26835 -1.3 -2.6 exodeoxyribonuclease VII small subunit compare
PFLU_RS25755 -1.3 -0.9 pantoate--beta-alanine ligase compare
PFLU_RS21425 -1.3 -3.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS07910 -1.3 -2.1 type 1 fimbrial protein compare
PFLU_RS21625 -1.3 -7.0 ParA family protein compare
PFLU_RS21315 -1.3 -4.2 GTP cyclohydrolase I FolE compare
PFLU_RS23170 -1.3 -4.7 flagellar hook assembly protein FlgD compare
PFLU_RS15910 -1.3 -1.6 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS07685 -1.3 -3.5 transcriptional repressor LexA compare
PFLU_RS04165 -1.3 -3.5 cell division protein ZapE compare
PFLU_RS18625 -1.3 -4.5 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS08160 -1.3 -6.1 sugar transferase compare
PFLU_RS22600 -1.3 -1.8 RNA polymerase sigma factor SigX compare
PFLU_RS04430 -1.3 -5.5 ATP-binding cassette domain-containing protein compare
PFLU_RS22000 -1.3 -5.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS28665 -1.3 -8.9 threonine ammonia-lyase, biosynthetic compare
PFLU_RS02365 -1.3 -7.0 glycosyltransferase compare
PFLU_RS30555 -1.3 -2.3 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Malic acid disodium salt monohydrate across organisms