Experiment set27S397 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -4.5 -6.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02490 -4.5 -16.1 phosphoserine phosphatase SerB compare
PFLU_RS28695 -4.4 -10.3 phosphoglycerate dehydrogenase compare
PFLU_RS19550 -4.4 -1.5 ABC transporter ATP-binding protein compare
PFLU_RS27365 -4.3 -12.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS04465 -4.2 -11.1 ATP phosphoribosyltransferase compare
PFLU_RS28390 -4.2 -12.6 methionine biosynthesis protein MetW compare
PFLU_RS20540 -4.2 -10.4 phosphoribosylanthranilate isomerase compare
PFLU_RS20565 -4.2 -15.3 3-isopropylmalate dehydrogenase compare
PFLU_RS25640 -4.2 -14.3 ketol-acid reductoisomerase compare
PFLU_RS29515 -4.1 -14.1 RidA family protein compare
PFLU_RS24765 -4.1 -24.3 2-isopropylmalate synthase compare
PFLU_RS12975 -4.1 -4.8 DUF934 domain-containing protein compare
PFLU_RS27370 -4.1 -15.7 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -4.0 -16.6 homoserine O-acetyltransferase compare
PFLU_RS01605 -3.8 -7.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24025 -3.8 -14.0 quinolinate synthase NadA compare
PFLU_RS03970 -3.8 -13.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS28535 -3.7 -18.9 dihydroxy-acid dehydratase compare
PFLU_RS00180 -3.7 -8.2 tryptophan synthase subunit beta compare
PFLU_RS04470 -3.7 -11.9 histidinol dehydrogenase compare
PFLU_RS02590 -3.7 -11.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20510 -3.7 -15.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS23115 -3.7 -18.8 dicarboxylate/amino acid:cation symporter compare
PFLU_RS20580 -3.7 -14.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS23070 -3.6 -1.7 50S ribosomal protein L32 compare
PFLU_RS12980 -3.6 -7.9 nitrite/sulfite reductase compare
PFLU_RS23175 -3.6 -10.3 flagellar basal body rod protein FlgC compare
PFLU_RS28655 -3.6 -12.7 HAD family hydrolase compare
PFLU_RS21655 -3.4 -9.0 response regulator compare
PFLU_RS28165 -3.4 -14.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01900 -3.4 -7.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS23065 -3.4 -11.9 phosphate acyltransferase PlsX compare
PFLU_RS01610 -3.3 -11.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS26535 -3.3 -9.7 thiamine phosphate synthase compare
PFLU_RS21710 -3.3 -9.3 flagellar type III secretion system pore protein FliP compare
PFLU_RS00175 -3.3 -8.9 tryptophan synthase subunit alpha compare
PFLU_RS01895 -3.2 -8.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS03665 -3.2 -6.4 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS25360 -3.2 -10.1 glutamate 5-kinase compare
PFLU_RS21835 -3.2 -18.9 flagellar hook-associated protein FlgK compare
PFLU_RS21755 -3.2 -10.4 flagella biosynthesis chaperone FliJ compare
PFLU_RS21695 -3.1 -8.1 flagellar biosynthesis protein FlhB compare
PFLU_RS21820 -3.1 -12.9 flagellin compare
PFLU_RS21770 -3.1 -11.8 flagellar motor switch protein FliG compare
PFLU_RS22740 -3.1 -2.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS26530 -3.0 -16.6 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS25750 -3.0 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS03555 -3.0 -1.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS21830 -3.0 -21.0 flagellar hook-associated protein 3 compare
PFLU_RS01620 -3.0 -9.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS18505 -3.0 -8.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01400 -3.0 -14.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28420 -2.9 -10.7 thiazole synthase compare
PFLU_RS21810 -2.9 -20.2 flagellar filament capping protein FliD compare
PFLU_RS21845 -2.9 -9.2 flagellar basal body P-ring protein FlgI compare
PFLU_RS02430 -2.9 -16.3 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS08410 -2.9 -9.7 HTH-type transcriptional regulator CysB compare
PFLU_RS21760 -2.9 -13.7 flagellar protein export ATPase FliI compare
PFLU_RS23185 -2.9 -15.9 protein-glutamate O-methyltransferase CheR compare
PFLU_RS23180 -2.9 -9.8 flagellar basal body rod protein FlgB compare
PFLU_RS21735 -2.9 -10.2 flagellar hook-length control protein FliK compare
PFLU_RS23305 -2.8 -12.1 arginine N-succinyltransferase compare
PFLU_RS21850 -2.8 -14.5 flagellar basal body L-ring protein FlgH compare
PFLU_RS05630 -2.8 -2.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS21615 -2.7 -10.4 chemotaxis protein CheW compare
PFLU_RS07910 -2.7 -2.9 type 1 fimbrial protein compare
PFLU_RS23165 -2.7 -17.9 flagellar hook protein FlgE compare
PFLU_RS23310 -2.7 -9.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS20515 -2.7 -3.2 amidophosphoribosyltransferase compare
PFLU_RS21765 -2.7 -8.8 flagellar assembly protein FliH compare
PFLU_RS21675 -2.7 -15.0 flagellar biosynthesis protein FlhA compare
PFLU_RS21805 -2.7 -13.6 flagellar export chaperone FliS compare
PFLU_RS27635 -2.7 -11.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS21860 -2.6 -8.6 flagellar basal body rod protein FlgF compare
PFLU_RS21855 -2.6 -9.3 flagellar basal-body rod protein FlgG compare
PFLU_RS21700 -2.6 -7.8 flagellar type III secretion system protein FliR compare
PFLU_RS03770 -2.6 -13.7 sulfate adenylyltransferase subunit CysN compare
PFLU_RS21795 -2.6 -18.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23380 -2.6 -1.7 HAD-IB family hydrolase compare
PFLU_RS27650 -2.6 -16.2 biotin synthase BioB compare
PFLU_RS21645 -2.5 -8.6 chemotaxis protein CheA compare
PFLU_RS21725 -2.5 -9.8 flagellar motor switch protein FliM compare
PFLU_RS23205 -2.5 -10.3 flagellar protein FlgN compare
PFLU_RS07225 -2.5 -16.4 L-aspartate oxidase compare
PFLU_RS21660 -2.5 -11.7 RNA polymerase sigma factor FliA compare
PFLU_RS23195 -2.5 -13.1 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS28195 -2.5 -14.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS25645 -2.5 -2.9 acetolactate synthase small subunit compare
PFLU_RS18530 -2.4 -4.3 DNA translocase FtsK compare
PFLU_RS21640 -2.4 -7.9 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS04140 -2.4 -2.3 response regulator transcription factor compare
PFLU_RS01315 -2.4 -3.2 Hsp33 family molecular chaperone HslO compare
PFLU_RS21985 -2.4 -4.9 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS09055 -2.4 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01625 -2.3 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS21705 -2.3 -6.1 flagellar biosynthesis protein FliQ compare
PFLU_RS21780 -2.3 -5.9 flagellar hook-basal body complex protein FliE compare
PFLU_RS03765 -2.3 -12.1 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01320 -2.3 -10.0 phosphoenolpyruvate carboxykinase compare
PFLU_RS24090 -2.2 -3.0 Holliday junction branch migration protein RuvA compare
PFLU_RS05720 -2.2 -10.8 OmpA family protein compare
PFLU_RS01995 -2.2 -12.1 malate dehydrogenase compare
PFLU_RS07255 -2.2 -6.3 sulfurtransferase TusA family protein compare
PFLU_RS27645 -2.2 -13.0 8-amino-7-oxononanoate synthase compare
PFLU_RS00415 -2.1 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS21670 -2.1 -11.2 flagellar biosynthesis protein FlhF compare
PFLU_RS13050 -2.1 -6.9 VWA domain-containing protein compare
PFLU_RS20660 -2.1 -11.6 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS13765 -2.1 -2.3 hypothetical protein compare
PFLU_RS18675 -2.0 -3.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS15410 -2.0 -2.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS22070 -2.0 -3.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS21635 -2.0 -5.6 flagellar motor protein compare
PFLU_RS02860 -2.0 -3.2 urease subunit beta compare
PFLU_RS29095 -2.0 -15.9 polyphosphate kinase 1 compare
PFLU_RS23235 -2.0 -3.8 Arc family DNA-binding protein compare
PFLU_RS20290 -1.9 -2.0 integration host factor subunit alpha compare
PFLU_RS21240 -1.9 -2.2 hypothetical protein compare
PFLU_RS22105 -1.9 -3.6 cysteine synthase CysM compare
PFLU_RS22735 -1.9 -9.7 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS14715 -1.9 -8.1 protein-glutamate O-methyltransferase CheR compare
PFLU_RS13015 -1.9 -5.5 precorrin-4 C(11)-methyltransferase compare
PFLU_RS13540 -1.9 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS31840 -1.9 -1.7 hypothetical protein compare
PFLU_RS27630 -1.9 -7.1 dethiobiotin synthase compare
PFLU_RS04165 -1.9 -4.1 cell division protein ZapE compare
PFLU_RS21775 -1.8 -8.3 flagellar basal body M-ring protein FliF compare
PFLU_RS08675 -1.8 -4.6 DsbE family thiol:disulfide interchange protein compare
PFLU_RS13045 -1.8 -5.3 AAA domain-containing protein compare
PFLU_RS31830 -1.8 -1.3 hypothetical protein compare
PFLU_RS21990 -1.8 -7.6 alpha-ribazole phosphatase family protein compare
PFLU_RS02990 -1.8 -5.1 precorrin-3B C(17)-methyltransferase compare
PFLU_RS22395 -1.8 -5.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS22095 -1.8 -12.7 GTP diphosphokinase compare
PFLU_RS08670 -1.8 -6.7 heme lyase CcmF/NrfE family subunit compare
PFLU_RS13085 -1.8 -3.7 DUF1315 family protein compare
PFLU_RS22075 -1.8 -8.6 DUF3108 domain-containing protein compare
PFLU_RS27640 -1.7 -1.6 alpha/beta fold hydrolase compare
PFLU_RS02970 -1.7 -5.7 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS03610 -1.7 -4.0 redox-regulated ATPase YchF compare
PFLU_RS19170 -1.7 -4.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS14300 -1.7 -1.4 response regulator transcription factor compare
PFLU_RS02985 -1.7 -9.0 precorrin-2 C(20)-methyltransferase compare
PFLU_RS02565 -1.7 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS13035 -1.7 -2.5 cobalamin biosynthesis protein CobW compare
PFLU_RS11475 -1.7 -1.2 histidine kinase compare
PFLU_RS02975 -1.7 -6.6 precorrin-3B synthase compare
PFLU_RS20730 -1.7 -2.1 hypothetical protein compare
PFLU_RS13040 -1.7 -10.5 cobaltochelatase subunit CobN compare
PFLU_RS27440 -1.7 -5.2 nucleotidyltransferase family protein compare
PFLU_RS14550 -1.6 -6.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS22000 -1.6 -6.7 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS22725 -1.6 -2.9 transcriptional regulator compare
PFLU_RS18515 -1.6 -1.9 fluoride efflux transporter CrcB compare
PFLU_RS06320 -1.6 -2.3 OmpH family outer membrane protein compare
PFLU_RS18655 -1.6 -1.8 NADH-quinone oxidoreductase subunit J compare
PFLU_RS08160 -1.6 -6.9 sugar transferase compare
PFLU_RS04475 -1.6 -8.5 histidinol-phosphate transaminase compare
PFLU_RS21665 -1.6 -4.9 MinD/ParA family protein compare
PFLU_RS21630 -1.6 -8.2 flagellar motor protein MotD compare
PFLU_RS31530 -1.6 -1.1 transposase compare
PFLU_RS27380 -1.5 -8.1 anthranilate synthase component I compare
PFLU_RS28965 -1.5 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS24170 -1.5 -7.2 Nudix family hydrolase compare
PFLU_RS22025 -1.5 -9.8 cobyrinate a,c-diamide synthase compare
PFLU_RS02365 -1.5 -8.0 glycosyltransferase compare
PFLU_RS31635 -1.5 -3.1 IS21 family transposase compare
PFLU_RS25715 -1.5 -7.5 RNA polymerase-binding protein DksA compare
PFLU_RS26640 -1.5 -7.4 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS19495 -1.5 -3.1 SDR family oxidoreductase compare
PFLU_RS21995 -1.5 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS22010 -1.5 -4.7 threonine-phosphate decarboxylase compare
PFLU_RS21625 -1.5 -6.9 ParA family protein compare
PFLU_RS24125 -1.4 -2.1 cold-shock protein compare
PFLU_RS01405 -1.4 -6.4 sensor histidine kinase compare
PFLU_RS02965 -1.4 -7.9 cobalt-precorrin-6A reductase compare
PFLU_RS12655 -1.4 -2.9 hypothetical protein compare
PFLU_RS25800 -1.4 -6.1 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS22005 -1.4 -8.0 cobyric acid synthase compare
PFLU_RS09720 -1.4 -1.8 single-stranded DNA-binding protein compare
PFLU_RS12220 -1.4 -2.8 AraC family transcriptional regulator compare
PFLU_RS26835 -1.4 -3.0 exodeoxyribonuclease VII small subunit compare
PFLU_RS24695 -1.4 -1.7 PTS glucose transporter subunit IIB compare
PFLU_RS08065 -1.4 -5.9 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS29900 -1.4 -7.8 DNA helicase II compare
PFLU_RS06055 -1.4 -1.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS08735 -1.4 -1.2 histidine phosphatase family protein compare
PFLU_RS24790 -1.4 -3.6 tetratricopeptide repeat protein compare
PFLU_RS13000 -1.4 -8.8 methionine synthase compare
PFLU_RS24095 -1.4 -2.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS25735 -1.3 -2.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00065 -1.3 -6.9 lysophospholipid acyltransferase compare
PFLU_RS25755 -1.3 -0.9 pantoate--beta-alanine ligase compare
PFLU_RS17895 -1.3 -3.3 glycosyltransferase family 2 protein compare
PFLU_RS01615 -1.3 -2.9 DUF2164 domain-containing protein compare
PFLU_RS27910 -1.3 -1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS04835 -1.3 -1.3 hypothetical protein compare
PFLU_RS22600 -1.3 -1.8 RNA polymerase sigma factor SigX compare
PFLU_RS07685 -1.3 -2.7 transcriptional repressor LexA compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Malic acid disodium salt monohydrate across organisms