Experiment set27S396 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS24695 -4.9 -1.9 PTS glucose transporter subunit IIB compare
PFLU_RS25120 -4.3 -3.0 response regulator compare
PFLU_RS21710 -4.2 -5.7 flagellar type III secretion system pore protein FliP compare
PFLU_RS26535 -4.1 -4.0 thiamine phosphate synthase compare
PFLU_RS23180 -4.1 -5.6 flagellar basal body rod protein FlgB compare
PFLU_RS28695 -4.1 -4.0 phosphoglycerate dehydrogenase compare
PFLU_RS21695 -4.0 -6.2 flagellar biosynthesis protein FlhB compare
PFLU_RS02490 -4.0 -4.8 phosphoserine phosphatase SerB compare
PFLU_RS21765 -3.9 -6.0 flagellar assembly protein FliH compare
PFLU_RS29515 -3.8 -5.9 RidA family protein compare
PFLU_RS03970 -3.8 -5.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS28385 -3.8 -6.3 homoserine O-acetyltransferase compare
PFLU_RS28420 -3.8 -6.3 thiazole synthase compare
PFLU_RS21780 -3.8 -2.6 flagellar hook-basal body complex protein FliE compare
PFLU_RS21705 -3.7 -6.2 flagellar biosynthesis protein FliQ compare
PFLU_RS27365 -3.7 -5.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS24765 -3.7 -10.6 2-isopropylmalate synthase compare
PFLU_RS24025 -3.7 -4.3 quinolinate synthase NadA compare
PFLU_RS25360 -3.6 -2.5 glutamate 5-kinase compare
PFLU_RS02590 -3.6 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS06055 -3.6 -2.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS21850 -3.6 -10.4 flagellar basal body L-ring protein FlgH compare
PFLU_RS04465 -3.6 -4.9 ATP phosphoribosyltransferase compare
PFLU_RS21860 -3.6 -5.4 flagellar basal body rod protein FlgF compare
PFLU_RS21725 -3.6 -6.8 flagellar motor switch protein FliM compare
PFLU_RS21755 -3.6 -6.8 flagella biosynthesis chaperone FliJ compare
PFLU_RS27370 -3.6 -6.8 anthranilate phosphoribosyltransferase compare
PFLU_RS28535 -3.6 -7.9 dihydroxy-acid dehydratase compare
PFLU_RS21775 -3.5 -7.6 flagellar basal body M-ring protein FliF compare
PFLU_RS28390 -3.5 -5.8 methionine biosynthesis protein MetW compare
PFLU_RS20510 -3.5 -4.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01895 -3.5 -3.4 phosphoribosyl-ATP diphosphatase compare
PFLU_RS21675 -3.5 -13.7 flagellar biosynthesis protein FlhA compare
PFLU_RS27630 -3.5 -4.1 dethiobiotin synthase compare
PFLU_RS23195 -3.5 -12.8 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS04530 -3.5 -2.4 hypothetical protein compare
PFLU_RS23115 -3.5 -9.7 dicarboxylate/amino acid:cation symporter compare
PFLU_RS02790 -3.5 -2.2 TetR family transcriptional regulator compare
PFLU_RS28250 -3.5 -3.3 malonate decarboxylase holo-ACP synthase compare
PFLU_RS25640 -3.5 -6.2 ketol-acid reductoisomerase compare
PFLU_RS20580 -3.4 -4.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS23165 -3.4 -15.7 flagellar hook protein FlgE compare
PFLU_RS21615 -3.4 -5.1 chemotaxis protein CheW compare
PFLU_RS21845 -3.3 -7.4 flagellar basal body P-ring protein FlgI compare
PFLU_RS20575 -3.3 -3.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS21835 -3.3 -11.9 flagellar hook-associated protein FlgK compare
PFLU_RS08410 -3.3 -8.7 HTH-type transcriptional regulator CysB compare
PFLU_RS20565 -3.2 -6.9 3-isopropylmalate dehydrogenase compare
PFLU_RS20540 -3.2 -3.8 phosphoribosylanthranilate isomerase compare
PFLU_RS23175 -3.2 -6.5 flagellar basal body rod protein FlgC compare
PFLU_RS21760 -3.2 -10.4 flagellar protein export ATPase FliI compare
PFLU_RS12975 -3.2 -2.2 DUF934 domain-containing protein compare
PFLU_RS21855 -3.2 -7.4 flagellar basal-body rod protein FlgG compare
PFLU_RS01400 -3.1 -8.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23185 -3.1 -9.9 protein-glutamate O-methyltransferase CheR compare
PFLU_RS25955 -3.1 -2.5 hypothetical protein compare
PFLU_RS21660 -3.1 -9.8 RNA polymerase sigma factor FliA compare
PFLU_RS23065 -3.1 -4.7 phosphate acyltransferase PlsX compare
PFLU_RS21770 -3.0 -7.5 flagellar motor switch protein FliG compare
PFLU_RS26530 -3.0 -8.8 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS01605 -3.0 -2.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS07255 -3.0 -2.9 sulfurtransferase TusA family protein compare
PFLU_RS27650 -3.0 -10.6 biotin synthase BioB compare
PFLU_RS04470 -3.0 -4.5 histidinol dehydrogenase compare
PFLU_RS00180 -2.9 -3.5 tryptophan synthase subunit beta compare
PFLU_RS21830 -2.9 -13.1 flagellar hook-associated protein 3 compare
PFLU_RS21700 -2.9 -6.7 flagellar type III secretion system protein FliR compare
PFLU_RS05720 -2.9 -8.7 OmpA family protein compare
PFLU_RS01900 -2.9 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS26145 -2.9 -1.5 hypothetical protein compare
PFLU_RS02430 -2.9 -11.6 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS27635 -2.9 -7.2 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS28655 -2.9 -2.0 HAD family hydrolase compare
PFLU_RS01615 -2.9 -4.8 DUF2164 domain-containing protein compare
PFLU_RS05965 -2.9 -1.5 hypothetical protein compare
PFLU_RS27640 -2.8 -2.3 alpha/beta fold hydrolase compare
PFLU_RS21820 -2.8 -5.4 flagellin compare
PFLU_RS01610 -2.8 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS21795 -2.8 -16.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS21735 -2.8 -9.8 flagellar hook-length control protein FliK compare
PFLU_RS21810 -2.8 -10.5 flagellar filament capping protein FliD compare
PFLU_RS20660 -2.8 -9.3 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS30630 -2.8 -1.5 hypothetical protein compare
PFLU_RS28165 -2.7 -5.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS27645 -2.7 -10.5 8-amino-7-oxononanoate synthase compare
PFLU_RS23070 -2.7 -1.4 50S ribosomal protein L32 compare
PFLU_RS20765 -2.7 -2.4 hypothetical protein compare
PFLU_RS05630 -2.7 -1.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01620 -2.7 -3.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS31185 -2.7 -5.9 hypothetical protein compare
PFLU_RS12980 -2.6 -3.1 nitrite/sulfite reductase compare
PFLU_RS31010 -2.6 -1.6 transposase compare
PFLU_RS23205 -2.6 -7.9 flagellar protein FlgN compare
PFLU_RS07225 -2.6 -11.1 L-aspartate oxidase compare
PFLU_RS03665 -2.6 -3.0 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS03765 -2.5 -7.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS23305 -2.5 -5.7 arginine N-succinyltransferase compare
PFLU_RS08650 -2.5 -1.7 heme exporter protein CcmB compare
PFLU_RS12175 -2.5 -1.3 methyl-accepting chemotaxis protein compare
PFLU_RS14550 -2.5 -4.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS03770 -2.5 -8.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS28195 -2.5 -10.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS13050 -2.5 -4.4 VWA domain-containing protein compare
PFLU_RS22735 -2.5 -6.8 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS21670 -2.4 -7.0 flagellar biosynthesis protein FlhF compare
PFLU_RS00175 -2.4 -2.4 tryptophan synthase subunit alpha compare
PFLU_RS01320 -2.4 -4.6 phosphoenolpyruvate carboxykinase compare
PFLU_RS02970 -2.4 -4.5 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS18505 -2.3 -2.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS13035 -2.3 -2.2 cobalamin biosynthesis protein CobW compare
PFLU_RS21805 -2.3 -5.4 flagellar export chaperone FliS compare
PFLU_RS17895 -2.3 -5.0 glycosyltransferase family 2 protein compare
PFLU_RS21645 -2.3 -6.6 chemotaxis protein CheA compare
PFLU_RS17920 -2.3 -2.2 acyltransferase compare
PFLU_RS19875 -2.3 -3.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS18530 -2.3 -1.6 DNA translocase FtsK compare
PFLU_RS28965 -2.3 -6.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS08665 -2.3 -3.1 cytochrome c maturation protein CcmE compare
PFLU_RS07520 -2.3 -1.2 hypothetical protein compare
PFLU_RS31830 -2.3 -1.2 hypothetical protein compare
PFLU_RS17060 -2.2 -1.5 monooxygenase compare
PFLU_RS27690 -2.2 -1.8 response regulator compare
PFLU_RS23310 -2.2 -4.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS21655 -2.1 -4.7 response regulator compare
PFLU_RS21985 -2.1 -2.5 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS21640 -2.1 -5.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS31635 -2.1 -2.0 IS21 family transposase compare
PFLU_RS22725 -2.0 -1.9 transcriptional regulator compare
PFLU_RS12635 -2.0 -2.0 conjugal transfer protein TraR compare
PFLU_RS21600 -2.0 -2.7 response regulator transcription factor compare
PFLU_RS01685 -2.0 -3.5 nitrogen regulation protein NR(I) compare
PFLU_RS02975 -2.0 -5.5 precorrin-3B synthase compare
PFLU_RS08165 -2.0 -1.9 acyl carrier protein compare
PFLU_RS15830 -2.0 -2.3 His-Xaa-Ser system protein HxsD compare
PFLU_RS28310 -2.0 -1.3 response regulator compare
PFLU_RS18735 -2.0 -1.3 hypothetical protein compare
PFLU_RS02990 -2.0 -4.1 precorrin-3B C(17)-methyltransferase compare
PFLU_RS08655 -2.0 -2.6 heme ABC transporter permease compare
PFLU_RS27380 -1.9 -10.0 anthranilate synthase component I compare
PFLU_RS14300 -1.9 -1.8 response regulator transcription factor compare
PFLU_RS14810 -1.9 -1.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS00695 -1.9 -1.0 DUF2789 domain-containing protein compare
PFLU_RS08065 -1.9 -4.1 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS31440 -1.9 -1.8 hypothetical protein compare
PFLU_RS13895 -1.9 -1.3 helix-turn-helix transcriptional regulator compare
PFLU_RS07495 -1.9 -1.7 DUF2892 domain-containing protein compare
PFLU_RS12220 -1.9 -2.5 AraC family transcriptional regulator compare
PFLU_RS19955 -1.9 -2.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS25645 -1.9 -1.3 acetolactate synthase small subunit compare
PFLU_RS13040 -1.9 -6.9 cobaltochelatase subunit CobN compare
PFLU_RS02765 -1.9 -1.7 HupE/UreJ family protein compare
PFLU_RS16510 -1.9 -2.5 thiol-disulfide oxidoreductase DCC family protein compare
PFLU_RS22740 -1.9 -1.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS01995 -1.8 -5.5 malate dehydrogenase compare
PFLU_RS28370 -1.8 -5.3 YggS family pyridoxal phosphate-dependent enzyme compare
PFLU_RS08735 -1.8 -1.3 histidine phosphatase family protein compare
PFLU_RS14050 -1.8 -1.4 hypothetical protein compare
PFLU_RS07695 -1.8 -2.4 beta-N-acetylhexosaminidase compare
PFLU_RS22000 -1.8 -4.8 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS30590 -1.8 -1.2 hypothetical protein compare
PFLU_RS30645 -1.8 -1.3 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS28690 -1.8 -9.3 FAD-binding oxidoreductase compare
PFLU_RS09575 -1.8 -2.7 FadR family transcriptional regulator compare
PFLU_RS11285 -1.8 -2.4 hypothetical protein compare
PFLU_RS25190 -1.8 -1.3 hypothetical protein compare
PFLU_RS21630 -1.8 -7.9 flagellar motor protein MotD compare
PFLU_RS22025 -1.8 -7.2 cobyrinate a,c-diamide synthase compare
PFLU_RS21990 -1.8 -4.8 alpha-ribazole phosphatase family protein compare
PFLU_RS04475 -1.8 -7.5 histidinol-phosphate transaminase compare
PFLU_RS30345 -1.8 -2.4 DUF2559 family protein compare
PFLU_RS31590 -1.8 -1.6 hypothetical protein compare
PFLU_RS23235 -1.7 -2.0 Arc family DNA-binding protein compare
PFLU_RS02980 -1.7 -1.2 precorrin-8X methylmutase compare
PFLU_RS21635 -1.7 -4.6 flagellar motor protein compare
PFLU_RS02985 -1.7 -6.8 precorrin-2 C(20)-methyltransferase compare
PFLU_RS30170 -1.7 -4.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
PFLU_RS14715 -1.7 -5.5 protein-glutamate O-methyltransferase CheR compare
PFLU_RS16390 -1.7 -1.1 DUF411 domain-containing protein compare
PFLU_RS30670 -1.7 -2.8 DUF4102 domain-containing protein compare
PFLU_RS13715 -1.7 -1.0 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS20625 -1.7 -2.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS19910 -1.7 -1.4 hypothetical protein compare
PFLU_RS11885 -1.7 -1.0 type II secretion system protein M compare
PFLU_RS13945 -1.7 -1.7 hypothetical protein compare
PFLU_RS13085 -1.7 -2.3 DUF1315 family protein compare
PFLU_RS00530 -1.7 -1.2 DUF2388 domain-containing protein compare
PFLU_RS13045 -1.7 -3.3 AAA domain-containing protein compare
PFLU_RS08485 -1.7 -1.8 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS19855 -1.7 -1.3 DUF4398 domain-containing protein compare
PFLU_RS04445 -1.7 -2.7 ABC transporter substrate-binding protein compare
PFLU_RS24475 -1.6 -12.2 AmpG family muropeptide MFS transporter compare
PFLU_RS22015 -1.6 -5.4 cobalamin biosynthesis protein compare
PFLU_RS24170 -1.6 -5.4 Nudix family hydrolase compare
PFLU_RS31490 -1.6 -1.2 hypothetical protein compare
PFLU_RS24535 -1.6 -2.1 DUF3509 domain-containing protein compare
PFLU_RS30730 -1.6 -1.9 helix-turn-helix domain-containing protein compare
PFLU_RS00870 -1.6 -1.1 hypothetical protein compare
PFLU_RS02000 -1.6 -11.9 penicillin-binding protein 1A compare
PFLU_RS13000 -1.6 -7.4 methionine synthase compare
PFLU_RS08670 -1.6 -4.5 heme lyase CcmF/NrfE family subunit compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D,L-Malic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source D,L-Malic Acid across organisms