Experiment set27S394 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D,L-Malic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS29310 +1.9 2.6 accessory factor UbiK family protein compare
PFLU_RS25040 +1.5 5.2 DUF3077 domain-containing protein compare
PFLU_RS12915 +1.4 2.4 methyltransferase domain-containing protein compare
PFLU_RS18725 +1.3 1.7 alpha/beta hydrolase compare
PFLU_RS13105 +1.3 4.1 nuclear transport factor 2 family protein compare
PFLU_RS24305 +1.2 4.3 antibiotic biosynthesis monooxygenase compare
PFLU_RS18000 +1.2 1.8 AhpC/TSA family protein compare
PFLU_RS01875 +1.2 1.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS19910 +1.2 2.5 hypothetical protein compare
PFLU_RS11470 +1.1 3.6 hypothetical protein compare
PFLU_RS13665 +1.1 1.4 MarR family transcriptional regulator compare
PFLU_RS17060 +1.1 2.2 monooxygenase compare
PFLU_RS13765 +1.1 2.1 hypothetical protein compare
PFLU_RS11415 +1.1 2.9 protein glxC compare
PFLU_RS13845 +1.1 2.5 hypothetical protein compare
PFLU_RS21360 +1.0 2.1 MarR family transcriptional regulator compare
PFLU_RS05750 +1.0 1.6 methionine--tRNA ligase compare
PFLU_RS13215 +1.0 2.2 LysR family transcriptional regulator compare
PFLU_RS11505 +1.0 2.4 ABC transporter substrate-binding protein compare
PFLU_RS02515 +1.0 2.9 flagellar motor protein MotB compare
PFLU_RS15785 +0.9 2.9 type II secretion system protein GspH compare
PFLU_RS31840 +0.9 1.3 hypothetical protein compare
PFLU_RS03400 +0.9 2.2 hypothetical protein compare
PFLU_RS26145 +0.9 1.6 hypothetical protein compare
PFLU_RS02510 +0.9 7.1 flagellar motor stator protein MotA compare
PFLU_RS09535 +0.9 1.4 TIGR03750 family conjugal transfer protein compare
PFLU_RS21215 +0.9 2.0 YheU family protein compare
PFLU_RS19240 +0.9 2.4 Zn-dependent hydrolase compare
PFLU_RS31830 +0.9 1.2 hypothetical protein compare
PFLU_RS16025 +0.8 2.5 flavin-dependent monooxygenase compare
PFLU_RS03585 +0.8 1.7 hypothetical protein compare
PFLU_RS19610 +0.8 1.7 hypothetical protein compare
PFLU_RS29815 +0.8 2.4 aspartate ammonia-lyase compare
PFLU_RS11215 +0.8 3.1 ABC transporter ATP-binding protein compare
PFLU_RS29580 +0.8 1.9 ABC transporter ATP-binding protein compare
PFLU_RS31475 +0.8 1.8 hypothetical protein compare
PFLU_RS14430 +0.8 2.0 arsenate reductase ArsC compare
PFLU_RS31535 +0.8 0.7 hypothetical protein compare
PFLU_RS18585 +0.8 1.1 high frequency lysogenization protein HflD compare
PFLU_RS02825 +0.7 0.7 phosphate starvation-inducible protein PsiF compare
PFLU_RS12260 +0.7 0.9 hypothetical protein compare
PFLU_RS21290 +0.7 1.8 hypothetical protein compare
PFLU_RS23675 +0.7 2.2 hypothetical protein compare
PFLU_RS08350 +0.7 1.6 ABC transporter ATP-binding protein compare
PFLU_RS23390 +0.7 1.0 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS14130 +0.7 2.1 hypothetical protein compare
PFLU_RS15990 +0.7 0.9 SDR family oxidoreductase compare
PFLU_RS13200 +0.7 1.8 Ldh family oxidoreductase compare
PFLU_RS11225 +0.7 2.8 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare
PFLU_RS05340 +0.7 2.1 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS13895 +0.7 1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS01665 +0.7 2.1 glutaredoxin 3 compare
PFLU_RS31290 +0.7 0.7 EamA family transporter compare
PFLU_RS17855 +0.7 1.9 YjbF family lipoprotein compare
PFLU_RS00445 +0.7 1.6 hypothetical protein compare
PFLU_RS23475 +0.7 2.7 peptidase M4 compare
PFLU_RS09550 +0.7 1.5 hypothetical protein compare
PFLU_RS11845 +0.7 2.2 DUF4880 domain-containing protein compare
PFLU_RS31215 +0.7 1.6 hypothetical protein compare
PFLU_RS17355 +0.7 2.2 creatininase family protein compare
PFLU_RS13670 +0.7 2.0 (2Fe-2S)-binding protein compare
PFLU_RS19480 +0.7 3.0 amidase compare
PFLU_RS03055 +0.7 1.8 methyl-accepting chemotaxis protein compare
PFLU_RS17130 +0.7 2.7 protein BatD compare
PFLU_RS23445 +0.6 1.3 DUF1003 domain-containing protein compare
PFLU_RS01130 +0.6 2.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS29810 +0.6 4.0 LysR family transcriptional regulator compare
PFLU_RS25025 +0.6 1.6 hypothetical protein compare
PFLU_RS30555 +0.6 1.0 hypothetical protein compare
PFLU_RS30485 +0.6 1.7 hypothetical protein compare
PFLU_RS12230 +0.6 2.3 carboxymuconolactone decarboxylase family protein compare
PFLU_RS26440 +0.6 1.7 acyl carrier protein compare
PFLU_RS05410 +0.6 2.4 PadR family transcriptional regulator compare
PFLU_RS15280 +0.6 2.5 hypothetical protein compare
PFLU_RS14370 +0.6 1.7 hypothetical protein compare
PFLU_RS24420 +0.6 3.1 class I SAM-dependent methyltransferase compare
PFLU_RS14875 +0.6 1.9 hypothetical protein compare
PFLU_RS12210 +0.6 1.6 hypothetical protein compare
PFLU_RS04080 +0.6 2.4 hypothetical protein compare
PFLU_RS31510 +0.6 0.9 transcriptional regulator compare
PFLU_RS16360 +0.6 2.2 hypothetical protein compare
PFLU_RS20970 +0.6 0.6 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS22535 +0.6 4.3 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS00460 +0.6 3.6 glutamate/aspartate:proton symporter GltP compare
PFLU_RS19475 +0.6 1.8 Zn-dependent hydrolase compare
PFLU_RS29560 +0.6 0.5 hypothetical protein compare
PFLU_RS18225 +0.6 2.0 helix-turn-helix transcriptional regulator compare
PFLU_RS08600 +0.6 2.3 glutaredoxin family protein compare
PFLU_RS02840 +0.6 2.7 DnaJ domain-containing protein compare
PFLU_RS21110 +0.6 0.9 AAA family ATPase compare
PFLU_RS18115 +0.6 1.8 thioesterase compare
PFLU_RS17495 +0.6 1.3 hypothetical protein compare
PFLU_RS23660 +0.5 2.3 peptide deformylase compare
PFLU_RS15000 +0.5 1.5 HAMP domain-containing histidine kinase compare
PFLU_RS19090 +0.5 1.9 pyridoxal-phosphate dependent enzyme compare
PFLU_RS18820 +0.5 0.9 acyl-CoA dehydrogenase compare
PFLU_RS24590 +0.5 2.2 cytochrome c assembly protein compare
PFLU_RS21930 +0.5 2.0 DUF454 domain-containing protein compare
PFLU_RS20260 +0.5 1.0 terminase compare
PFLU_RS15025 +0.5 1.5 2-keto-4-pentenoate hydratase compare
PFLU_RS29390 +0.5 1.7 YkgJ family cysteine cluster protein compare
PFLU_RS06765 +0.5 2.6 4-carboxymuconolactone decarboxylase compare
PFLU_RS16245 +0.5 2.3 SDR family oxidoreductase compare
PFLU_RS17665 +0.5 3.1 SCO family protein compare
PFLU_RS30650 +0.5 1.9 DNA-binding protein compare
PFLU_RS12520 +0.5 2.0 carboxymuconolactone decarboxylase family protein compare
PFLU_RS27840 +0.5 1.1 hypothetical protein compare
PFLU_RS31590 +0.5 0.9 hypothetical protein compare
PFLU_RS31765 +0.5 1.5 hypothetical protein compare
PFLU_RS31145 +0.5 2.6 hypothetical protein compare
PFLU_RS14690 +0.5 1.5 hypothetical protein compare
PFLU_RS22610 +0.5 1.5 hypothetical protein compare
PFLU_RS11560 +0.5 1.3 aldolase compare
PFLU_RS12060 +0.5 2.3 DMT family transporter compare
PFLU_RS18135 +0.5 1.5 ABC transporter substrate-binding protein compare
PFLU_RS14335 +0.5 1.3 ABC transporter permease compare
PFLU_RS25205 +0.5 2.1 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS31440 +0.5 1.1 hypothetical protein compare
PFLU_RS23590 +0.5 1.0 gluconokinase compare
PFLU_RS00060 +0.5 1.5 DNA-3-methyladenine glycosylase I compare
PFLU_RS20755 +0.5 2.5 hypothetical protein compare
PFLU_RS04415 +0.5 1.1 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS18930 +0.5 2.2 exodeoxyribonuclease III compare
PFLU_RS22215 +0.5 1.9 3-phosphoglycerate kinase compare
PFLU_RS06680 +0.5 1.7 hypothetical protein compare
PFLU_RS30740 +0.5 2.0 IS3 family transposase compare
PFLU_RS30985 +0.5 1.2 hypothetical protein compare
PFLU_RS04740 +0.5 1.4 hypothetical protein compare
PFLU_RS29755 +0.5 3.3 phosphate ABC transporter ATP-binding protein compare
PFLU_RS08620 +0.5 1.5 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS04840 +0.5 1.2 SDR family oxidoreductase compare
PFLU_RS15590 +0.5 1.8 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
PFLU_RS18095 +0.5 1.4 GlxA family transcriptional regulator compare
PFLU_RS18295 +0.5 1.9 helix-turn-helix domain-containing protein compare
PFLU_RS19505 +0.5 2.0 erythritol/L-threitol dehydrogenase compare
PFLU_RS00550 +0.5 2.2 NAD(P) transhydrogenase subunit alpha compare
PFLU_RS05300 +0.5 2.5 lysoplasmalogenase compare
PFLU_RS15600 +0.5 1.6 ketoacyl-ACP synthase III compare
PFLU_RS18055 +0.5 0.8 hydrolase compare
PFLU_RS16470 +0.5 2.8 histone deacetylase family protein compare
PFLU_RS15830 +0.5 1.0 His-Xaa-Ser system protein HxsD compare
PFLU_RS26690 +0.5 1.5 hypothetical protein compare
PFLU_RS17735 +0.5 2.3 NAD(P)/FAD-dependent oxidoreductase compare
PFLU_RS15760 +0.5 1.4 general secretion pathway protein GspL compare
PFLU_RS22645 +0.5 3.5 EamA family transporter compare
PFLU_RS20245 +0.5 2.3 DUF2313 domain-containing protein compare
PFLU_RS14440 +0.5 0.6 hypothetical protein compare
PFLU_RS17335 +0.5 1.6 diaminopimelate epimerase compare
PFLU_RS14235 +0.5 1.5 iron transporter compare
PFLU_RS13760 +0.5 0.9 hypothetical protein compare
PFLU_RS31150 +0.5 1.8 hypothetical protein compare
PFLU_RS31570 +0.5 2.1 potassium transporter TrkH compare
PFLU_RS13775 +0.5 2.0 hypothetical protein compare
PFLU_RS13950 +0.5 1.0 hypothetical protein compare
PFLU_RS18985 +0.4 2.2 helix-turn-helix domain-containing protein compare
PFLU_RS04490 +0.4 1.5 hypoxanthine-guanine phosphoribosyltransferase compare
PFLU_RS10415 +0.4 1.8 6-carboxytetrahydropterin synthase QueD compare
PFLU_RS17615 +0.4 1.0 DeoR/GlpR transcriptional regulator compare
PFLU_RS24360 +0.4 1.8 DUF454 domain-containing protein compare
PFLU_RS01795 +0.4 1.9 glycine betaine/L-proline ABC transporter ATP-binding protein compare
PFLU_RS23345 +0.4 3.2 ABC transporter permease compare
PFLU_RS17525 +0.4 1.1 NUDIX domain-containing protein compare
PFLU_RS25570 +0.4 1.2 OmpA family protein compare
PFLU_RS14225 +0.4 1.9 deferrochelatase/peroxidase EfeB compare
PFLU_RS10560 +0.4 1.7 porphobilinogen synthase compare
PFLU_RS13720 +0.4 2.4 LysR family transcriptional regulator compare
PFLU_RS21570 +0.4 1.2 exonuclease compare
PFLU_RS07775 +0.4 1.7 DUF4404 family protein compare
PFLU_RS15380 +0.4 1.1 DUF1652 domain-containing protein compare
PFLU_RS17195 +0.4 1.1 acyl dehydratase compare
PFLU_RS17250 +0.4 2.1 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS11930 +0.4 0.8 biopolymer transporter ExbD compare
PFLU_RS23550 +0.4 1.6 YciI family protein compare
PFLU_RS05395 +0.4 1.8 DUF2132 domain-containing protein compare
PFLU_RS16445 +0.4 0.9 PIG-L family deacetylase compare
PFLU_RS12145 +0.4 0.8 nuclear transport factor 2 family protein compare
PFLU_RS29640 +0.4 1.9 type VI secretion system tube protein Hcp compare
PFLU_RS18075 +0.4 1.0 LysR family transcriptional regulator compare
PFLU_RS12705 +0.4 1.7 LysR family transcriptional regulator compare
PFLU_RS30645 +0.4 1.0 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS17795 +0.4 2.1 M20/M25/M40 family metallo-hydrolase compare
PFLU_RS22575 +0.4 1.7 ANTAR domain-containing protein compare
PFLU_RS15245 +0.4 1.7 response regulator compare
PFLU_RS22040 +0.4 2.1 NlpC/P60 family protein compare
PFLU_RS20210 +0.4 1.5 hypothetical protein compare
PFLU_RS07065 +0.4 1.3 hypothetical protein compare
PFLU_RS07045 +0.4 1.1 addiction module toxin, HicA family compare
PFLU_RS05620 +0.4 1.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS08625 +0.4 1.0 molybdenum cofactor biosynthesis protein B compare
PFLU_RS19830 +0.4 1.2 type VI secretion system tube protein Hcp compare
PFLU_RS26835 +0.4 1.3 exodeoxyribonuclease VII small subunit compare
PFLU_RS31225 +0.4 1.6 membrane protein insertion efficiency factor YidD compare
PFLU_RS20395 +0.4 2.7 deoxyribonuclease compare
PFLU_RS23015 +0.4 2.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS07850 +0.4 1.6 hypothetical protein compare
PFLU_RS10860 +0.4 1.6 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS09410 +0.4 1.8 hypothetical protein compare
PFLU_RS02760 +0.4 2.2 N-acylglucosamine 2-epimerase compare
PFLU_RS24430 +0.4 1.9 response regulator transcription factor compare
PFLU_RS17490 +0.4 1.5 glutaminase B compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D,L-Malic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source D,L-Malic Acid across organisms