Experiment set27S393 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS04465 -5.0 -6.0 ATP phosphoribosyltransferase compare
PFLU_RS28695 -4.9 -8.8 phosphoglycerate dehydrogenase compare
PFLU_RS27365 -4.7 -11.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS02490 -4.5 -14.5 phosphoserine phosphatase SerB compare
PFLU_RS23115 -4.5 -16.6 dicarboxylate/amino acid:cation symporter compare
PFLU_RS25640 -4.4 -12.2 ketol-acid reductoisomerase compare
PFLU_RS28535 -4.4 -16.1 dihydroxy-acid dehydratase compare
PFLU_RS27370 -4.3 -14.6 anthranilate phosphoribosyltransferase compare
PFLU_RS25360 -4.3 -8.2 glutamate 5-kinase compare
PFLU_RS20565 -4.2 -13.0 3-isopropylmalate dehydrogenase compare
PFLU_RS03970 -4.2 -12.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS20510 -4.1 -12.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01400 -4.1 -15.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24765 -4.1 -23.8 2-isopropylmalate synthase compare
PFLU_RS20540 -4.0 -10.4 phosphoribosylanthranilate isomerase compare
PFLU_RS29515 -4.0 -14.2 RidA family protein compare
PFLU_RS28385 -4.0 -15.6 homoserine O-acetyltransferase compare
PFLU_RS01895 -4.0 -7.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS02590 -3.9 -10.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20580 -3.9 -12.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28390 -3.9 -12.5 methionine biosynthesis protein MetW compare
PFLU_RS01620 -3.9 -7.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS12975 -3.9 -5.3 DUF934 domain-containing protein compare
PFLU_RS28165 -3.9 -11.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS00180 -3.9 -6.5 tryptophan synthase subunit beta compare
PFLU_RS01605 -3.8 -7.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24025 -3.8 -13.3 quinolinate synthase NadA compare
PFLU_RS04470 -3.7 -10.7 histidinol dehydrogenase compare
PFLU_RS01610 -3.6 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28655 -3.6 -11.4 HAD family hydrolase compare
PFLU_RS00175 -3.5 -7.1 tryptophan synthase subunit alpha compare
PFLU_RS13085 -3.5 -4.0 DUF1315 family protein compare
PFLU_RS01900 -3.4 -6.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS12980 -3.4 -7.5 nitrite/sulfite reductase compare
PFLU_RS20575 -3.3 -7.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS22740 -3.0 -2.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS01995 -2.9 -10.5 malate dehydrogenase compare
PFLU_RS23310 -2.9 -8.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS18530 -2.9 -6.2 DNA translocase FtsK compare
PFLU_RS07255 -2.9 -5.6 sulfurtransferase TusA family protein compare
PFLU_RS08665 -2.9 -6.0 cytochrome c maturation protein CcmE compare
PFLU_RS18505 -2.9 -7.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS28420 -2.9 -10.8 thiazole synthase compare
PFLU_RS02825 -2.8 -1.9 phosphate starvation-inducible protein PsiF compare
PFLU_RS22075 -2.8 -13.3 DUF3108 domain-containing protein compare
PFLU_RS20515 -2.8 -3.3 amidophosphoribosyltransferase compare
PFLU_RS03240 -2.8 -15.5 copper-translocating P-type ATPase compare
PFLU_RS23305 -2.8 -11.6 arginine N-succinyltransferase compare
PFLU_RS08655 -2.8 -4.8 heme ABC transporter permease compare
PFLU_RS21615 -2.7 -11.2 chemotaxis protein CheW compare
PFLU_RS08650 -2.7 -3.1 heme exporter protein CcmB compare
PFLU_RS23220 -2.7 -4.2 tRNA-Arg compare
PFLU_RS22735 -2.7 -10.9 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS23065 -2.6 -11.5 phosphate acyltransferase PlsX compare
PFLU_RS07665 -2.6 -2.5 type I DNA topoisomerase compare
PFLU_RS07225 -2.6 -16.5 L-aspartate oxidase compare
PFLU_RS23185 -2.6 -12.9 protein-glutamate O-methyltransferase CheR compare
PFLU_RS26530 -2.6 -14.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS01320 -2.6 -10.6 phosphoenolpyruvate carboxykinase compare
PFLU_RS00245 -2.6 -9.1 YheV family putative metal-binding protein compare
PFLU_RS03765 -2.5 -12.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS22835 -2.5 -9.7 amidotransferase compare
PFLU_RS08675 -2.5 -5.3 DsbE family thiol:disulfide interchange protein compare
PFLU_RS27650 -2.5 -15.7 biotin synthase BioB compare
PFLU_RS08670 -2.5 -8.5 heme lyase CcmF/NrfE family subunit compare
PFLU_RS26535 -2.4 -8.4 thiamine phosphate synthase compare
PFLU_RS25750 -2.4 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS07495 -2.3 -3.6 DUF2892 domain-containing protein compare
PFLU_RS12635 -2.3 -2.6 conjugal transfer protein TraR compare
PFLU_RS09055 -2.3 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS18675 -2.3 -2.2 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS22105 -2.3 -3.0 cysteine synthase CysM compare
PFLU_RS02430 -2.2 -14.2 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS25645 -2.2 -3.0 acetolactate synthase small subunit compare
PFLU_RS03770 -2.2 -12.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS02455 -2.2 -2.1 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS08860 -2.2 -3.2 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS03665 -2.1 -6.2 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS01625 -2.1 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS05210 -2.1 -2.7 HU family DNA-binding protein compare
PFLU_RS08410 -2.1 -7.5 HTH-type transcriptional regulator CysB compare
PFLU_RS04165 -2.1 -2.4 cell division protein ZapE compare
PFLU_RS21655 -2.0 -6.3 response regulator compare
PFLU_RS02990 -2.0 -5.4 precorrin-3B C(17)-methyltransferase compare
PFLU_RS14810 -2.0 -2.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS20290 -1.9 -2.0 integration host factor subunit alpha compare
PFLU_RS13035 -1.9 -3.1 cobalamin biosynthesis protein CobW compare
PFLU_RS25715 -1.9 -9.9 RNA polymerase-binding protein DksA compare
PFLU_RS21645 -1.9 -8.8 chemotaxis protein CheA compare
PFLU_RS13540 -1.9 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS22070 -1.8 -2.9 phosphoribosylglycinamide formyltransferase compare
PFLU_RS08735 -1.8 -1.9 histidine phosphatase family protein compare
PFLU_RS02670 -1.8 -4.7 hypothetical protein compare
PFLU_RS26145 -1.8 -1.7 hypothetical protein compare
PFLU_RS31440 -1.8 -2.4 hypothetical protein compare
PFLU_RS04140 -1.8 -2.4 response regulator transcription factor compare
PFLU_RS28965 -1.8 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS08185 -1.8 -8.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS02970 -1.8 -5.9 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS02975 -1.8 -7.8 precorrin-3B synthase compare
PFLU_RS31830 -1.8 -1.5 hypothetical protein compare
PFLU_RS25225 -1.7 -6.7 disulfide bond formation protein B compare
PFLU_RS00065 -1.7 -7.8 lysophospholipid acyltransferase compare
PFLU_RS24590 -1.7 -2.3 cytochrome c assembly protein compare
PFLU_RS27640 -1.7 -1.9 alpha/beta fold hydrolase compare
PFLU_RS27465 -1.7 -4.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS26635 -1.7 -4.7 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS01665 -1.7 -2.8 glutaredoxin 3 compare
PFLU_RS19170 -1.6 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS26905 -1.6 -7.5 transcriptional regulator NrdR compare
PFLU_RS22470 -1.6 -1.8 hypothetical protein compare
PFLU_RS24090 -1.6 -3.7 Holliday junction branch migration protein RuvA compare
PFLU_RS01585 -1.6 -5.8 oxidative damage protection protein compare
PFLU_RS22600 -1.6 -1.8 RNA polymerase sigma factor SigX compare
PFLU_RS02275 -1.6 -1.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS27645 -1.6 -9.4 8-amino-7-oxononanoate synthase compare
PFLU_RS23730 -1.6 -9.8 MurR/RpiR family transcriptional regulator compare
PFLU_RS28195 -1.6 -10.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS17920 -1.5 -2.0 acyltransferase compare
PFLU_RS18395 -1.5 -1.0 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS16580 -1.5 -2.3 hypothetical protein compare
PFLU_RS08160 -1.5 -6.7 sugar transferase compare
PFLU_RS30165 -1.5 -7.5 ParA family protein compare
PFLU_RS27635 -1.5 -6.7 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS27380 -1.5 -7.7 anthranilate synthase component I compare
PFLU_RS15910 -1.5 -1.7 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS26640 -1.5 -7.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS08660 -1.5 -3.3 heme exporter protein CcmD compare
PFLU_RS21640 -1.5 -5.5 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS26505 -1.5 -3.3 DUF2788 domain-containing protein compare
PFLU_RS03075 -1.5 -1.7 translation initiation factor Sui1 compare
PFLU_RS27630 -1.4 -4.5 dethiobiotin synthase compare
PFLU_RS17750 -1.4 -2.7 pirin family protein compare
PFLU_RS21425 -1.4 -3.4 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS02565 -1.4 -3.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS24095 -1.4 -1.8 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS07520 -1.4 -1.4 hypothetical protein compare
PFLU_RS12660 -1.4 -5.1 hypothetical protein compare
PFLU_RS24670 -1.4 -1.7 HigA family addiction module antidote protein compare
PFLU_RS03575 -1.4 -1.5 hypothetical protein compare
PFLU_RS01315 -1.3 -2.8 Hsp33 family molecular chaperone HslO compare
PFLU_RS31755 -1.3 -1.3 hypothetical protein compare
PFLU_RS08485 -1.3 -2.5 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS07275 -1.3 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS23895 -1.3 -1.6 DUF1289 domain-containing protein compare
PFLU_RS24205 -1.3 -1.5 DNA binding protein compare
PFLU_RS23070 -1.3 -1.0 50S ribosomal protein L32 compare
PFLU_RS23235 -1.3 -1.6 Arc family DNA-binding protein compare
PFLU_RS11980 -1.3 -4.6 precorrin-6A synthase (deacetylating) compare
PFLU_RS11325 -1.3 -4.8 helix-turn-helix domain-containing protein compare
PFLU_RS22095 -1.3 -9.2 GTP diphosphokinase compare
PFLU_RS25800 -1.3 -5.6 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS01095 -1.3 -3.3 ribbon-helix-helix protein, CopG family compare
PFLU_RS24085 -1.3 -3.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS29900 -1.3 -7.2 DNA helicase II compare
PFLU_RS08125 -1.3 -2.2 integration host factor subunit beta compare
PFLU_RS02985 -1.3 -7.3 precorrin-2 C(20)-methyltransferase compare
PFLU_RS18625 -1.2 -4.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS31840 -1.2 -1.3 hypothetical protein compare
PFLU_RS21805 -1.2 -7.4 flagellar export chaperone FliS compare
PFLU_RS14320 -1.2 -2.2 DUF2946 domain-containing protein compare
PFLU_RS13050 -1.2 -4.1 VWA domain-containing protein compare
PFLU_RS31775 -1.2 -3.3 hypothetical protein compare
PFLU_RS18450 -1.2 -3.5 DNA-3-methyladenine glycosylase I compare
PFLU_RS15410 -1.2 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS18665 -1.2 -2.9 NADH-quinone oxidoreductase subunit L compare
PFLU_RS29550 -1.2 -5.4 ATP-dependent DNA helicase RecG compare
PFLU_RS13825 -1.2 -1.4 hypothetical protein compare
PFLU_RS18740 -1.2 -3.5 Dyp-type peroxidase compare
PFLU_RS22725 -1.2 -2.5 transcriptional regulator compare
PFLU_RS23100 -1.2 -3.5 ribonuclease E compare
PFLU_RS11525 -1.2 -2.9 GntR family transcriptional regulator compare
PFLU_RS09670 -1.2 -1.9 integrating conjugative element protein compare
PFLU_RS30730 -1.1 -2.4 helix-turn-helix domain-containing protein compare
PFLU_RS25755 -1.1 -1.3 pantoate--beta-alanine ligase compare
PFLU_RS16960 -1.1 -1.8 LysR family transcriptional regulator compare
PFLU_RS11380 -1.1 -1.3 sarcosine oxidase subunit delta compare
PFLU_RS27375 -1.1 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS01615 -1.1 -2.6 DUF2164 domain-containing protein compare
PFLU_RS15610 -1.1 -3.4 helix-turn-helix transcriptional regulator compare
PFLU_RS23590 -1.1 -1.8 gluconokinase compare
PFLU_RS10340 -1.1 -1.7 hypothetical protein compare
PFLU_RS02965 -1.1 -6.8 cobalt-precorrin-6A reductase compare
PFLU_RS20660 -1.1 -6.8 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS21725 -1.1 -5.2 flagellar motor switch protein FliM compare
PFLU_RS22000 -1.1 -4.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS08875 -1.1 -1.5 heme-binding protein compare
PFLU_RS06815 -1.1 -4.8 TetR family transcriptional regulator compare
PFLU_RS13045 -1.1 -3.5 AAA domain-containing protein compare
PFLU_RS06055 -1.1 -1.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS09575 -1.1 -2.5 FadR family transcriptional regulator compare
PFLU_RS04070 -1.1 -0.7 peptide chain release factor 3 compare
PFLU_RS18700 -1.1 -1.3 hypothetical protein compare
PFLU_RS21985 -1.1 -2.7 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS01650 -1.1 -6.1 murein hydrolase activator EnvC compare
PFLU_RS22395 -1.1 -3.2 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS21670 -1.1 -6.4 flagellar biosynthesis protein FlhF compare
PFLU_RS01965 -1.1 -1.0 ATP-dependent protease subunit HslV compare
PFLU_RS03870 -1.0 -4.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
PFLU_RS21660 -1.0 -6.3 RNA polymerase sigma factor FliA compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms