Experiment set27S391 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27365 -5.2 -8.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28390 -4.9 -9.4 methionine biosynthesis protein MetW compare
PFLU_RS23115 -4.9 -13.8 dicarboxylate/amino acid:cation symporter compare
PFLU_RS01400 -4.9 -12.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28535 -4.8 -13.5 dihydroxy-acid dehydratase compare
PFLU_RS02490 -4.6 -14.5 phosphoserine phosphatase SerB compare
PFLU_RS27370 -4.5 -13.7 anthranilate phosphoribosyltransferase compare
PFLU_RS20565 -4.4 -12.1 3-isopropylmalate dehydrogenase compare
PFLU_RS04465 -4.4 -9.8 ATP phosphoribosyltransferase compare
PFLU_RS03970 -4.4 -11.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25640 -4.3 -11.9 ketol-acid reductoisomerase compare
PFLU_RS00180 -4.3 -5.1 tryptophan synthase subunit beta compare
PFLU_RS28385 -4.2 -14.5 homoserine O-acetyltransferase compare
PFLU_RS29515 -4.2 -13.6 RidA family protein compare
PFLU_RS01605 -4.2 -6.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24765 -4.1 -23.1 2-isopropylmalate synthase compare
PFLU_RS20510 -4.1 -13.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28165 -4.0 -10.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04470 -4.0 -9.4 histidinol dehydrogenase compare
PFLU_RS20575 -4.0 -6.6 3-isopropylmalate dehydratase small subunit compare
PFLU_RS26290 -4.0 -1.6 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS01620 -3.9 -7.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS02590 -3.9 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20580 -3.9 -12.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS25360 -3.8 -8.9 glutamate 5-kinase compare
PFLU_RS20540 -3.8 -10.4 phosphoribosylanthranilate isomerase compare
PFLU_RS08650 -3.8 -2.6 heme exporter protein CcmB compare
PFLU_RS28695 -3.8 -9.2 phosphoglycerate dehydrogenase compare
PFLU_RS01900 -3.8 -6.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS24025 -3.6 -13.4 quinolinate synthase NadA compare
PFLU_RS28655 -3.6 -11.1 HAD family hydrolase compare
PFLU_RS13085 -3.6 -4.2 DUF1315 family protein compare
PFLU_RS01610 -3.6 -9.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS03665 -3.6 -5.9 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS23070 -3.5 -2.0 50S ribosomal protein L32 compare
PFLU_RS00175 -3.5 -6.7 tryptophan synthase subunit alpha compare
PFLU_RS12975 -3.5 -5.7 DUF934 domain-containing protein compare
PFLU_RS12980 -3.3 -8.3 nitrite/sulfite reductase compare
PFLU_RS18505 -3.3 -5.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01895 -3.2 -7.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS08665 -3.1 -5.9 cytochrome c maturation protein CcmE compare
PFLU_RS26535 -3.1 -9.1 thiamine phosphate synthase compare
PFLU_RS01995 -3.1 -10.1 malate dehydrogenase compare
PFLU_RS23310 -3.0 -9.0 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS07255 -3.0 -6.3 sulfurtransferase TusA family protein compare
PFLU_RS08655 -3.0 -4.5 heme ABC transporter permease compare
PFLU_RS20515 -3.0 -2.0 amidophosphoribosyltransferase compare
PFLU_RS07225 -2.9 -17.6 L-aspartate oxidase compare
PFLU_RS08670 -2.8 -8.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS08165 -2.7 -3.6 acyl carrier protein compare
PFLU_RS08675 -2.7 -5.3 DsbE family thiol:disulfide interchange protein compare
PFLU_RS07665 -2.6 -2.5 type I DNA topoisomerase compare
PFLU_RS23065 -2.6 -11.2 phosphate acyltransferase PlsX compare
PFLU_RS26565 -2.6 -2.1 rRNA maturation RNase YbeY compare
PFLU_RS22075 -2.6 -13.2 DUF3108 domain-containing protein compare
PFLU_RS23305 -2.6 -11.1 arginine N-succinyltransferase compare
PFLU_RS22740 -2.6 -3.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS04075 -2.6 -1.4 hypothetical protein compare
PFLU_RS06055 -2.5 -3.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS28420 -2.5 -10.0 thiazole synthase compare
PFLU_RS22735 -2.5 -11.4 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS03240 -2.4 -13.6 copper-translocating P-type ATPase compare
PFLU_RS26530 -2.4 -14.5 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS05020 -2.4 -2.6 DUF1120 domain-containing protein compare
PFLU_RS22835 -2.3 -9.5 amidotransferase compare
PFLU_RS27650 -2.3 -14.8 biotin synthase BioB compare
PFLU_RS09055 -2.3 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS02670 -2.3 -5.2 hypothetical protein compare
PFLU_RS21615 -2.3 -9.0 chemotaxis protein CheW compare
PFLU_RS25750 -2.3 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS23185 -2.2 -12.6 protein-glutamate O-methyltransferase CheR compare
PFLU_RS08160 -2.2 -7.7 sugar transferase compare
PFLU_RS18530 -2.2 -4.2 DNA translocase FtsK compare
PFLU_RS22070 -2.2 -2.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS25645 -2.2 -2.9 acetolactate synthase small subunit compare
PFLU_RS01625 -2.1 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS08185 -2.1 -10.9 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS21645 -2.1 -9.9 chemotaxis protein CheA compare
PFLU_RS03765 -2.1 -11.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS03770 -2.1 -12.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS00415 -2.1 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS02430 -2.1 -13.6 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS19580 -2.0 -2.8 helix-turn-helix transcriptional regulator compare
PFLU_RS04165 -2.0 -3.2 cell division protein ZapE compare
PFLU_RS20730 -1.9 -2.6 hypothetical protein compare
PFLU_RS15795 -1.9 -2.7 hypothetical protein compare
PFLU_RS30165 -1.9 -8.1 ParA family protein compare
PFLU_RS22105 -1.9 -3.5 cysteine synthase CysM compare
PFLU_RS17060 -1.8 -2.0 monooxygenase compare
PFLU_RS21425 -1.8 -4.0 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS01320 -1.8 -8.3 phosphoenolpyruvate carboxykinase compare
PFLU_RS01965 -1.7 -1.2 ATP-dependent protease subunit HslV compare
PFLU_RS21655 -1.7 -4.5 response regulator compare
PFLU_RS26635 -1.7 -5.1 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS23220 -1.7 -3.8 tRNA-Arg compare
PFLU_RS24790 -1.7 -5.0 tetratricopeptide repeat protein compare
PFLU_RS14805 -1.7 -2.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS08410 -1.7 -6.2 HTH-type transcriptional regulator CysB compare
PFLU_RS26905 -1.7 -8.3 transcriptional regulator NrdR compare
PFLU_RS25715 -1.7 -8.7 RNA polymerase-binding protein DksA compare
PFLU_RS01615 -1.7 -4.2 DUF2164 domain-containing protein compare
PFLU_RS21770 -1.7 -6.8 flagellar motor switch protein FliG compare
PFLU_RS13715 -1.7 -1.1 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS02565 -1.6 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS22095 -1.6 -11.2 GTP diphosphokinase compare
PFLU_RS00245 -1.6 -6.3 YheV family putative metal-binding protein compare
PFLU_RS01585 -1.6 -5.6 oxidative damage protection protein compare
PFLU_RS04220 -1.6 -7.0 FadR family transcriptional regulator compare
PFLU_RS02275 -1.6 -1.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS07695 -1.6 -2.3 beta-N-acetylhexosaminidase compare
PFLU_RS24090 -1.6 -3.0 Holliday junction branch migration protein RuvA compare
PFLU_RS28965 -1.6 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS18675 -1.6 -2.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS21740 -1.5 -5.8 Hpt domain-containing protein compare
PFLU_RS12660 -1.5 -5.5 hypothetical protein compare
PFLU_RS21670 -1.5 -8.6 flagellar biosynthesis protein FlhF compare
PFLU_RS08660 -1.5 -3.3 heme exporter protein CcmD compare
PFLU_RS24095 -1.5 -1.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS12800 -1.5 -1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24205 -1.5 -1.9 DNA binding protein compare
PFLU_RS27380 -1.5 -7.5 anthranilate synthase component I compare
PFLU_RS07645 -1.5 -4.0 hypothetical protein compare
PFLU_RS18670 -1.5 -1.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS18625 -1.5 -4.5 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS23730 -1.5 -9.5 MurR/RpiR family transcriptional regulator compare
PFLU_RS11760 -1.5 -3.0 GlxA family transcriptional regulator compare
PFLU_RS13035 -1.5 -2.9 cobalamin biosynthesis protein CobW compare
PFLU_RS15610 -1.4 -4.2 helix-turn-helix transcriptional regulator compare
PFLU_RS14810 -1.4 -1.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS02975 -1.4 -5.8 precorrin-3B synthase compare
PFLU_RS25800 -1.4 -5.8 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS07245 -1.4 -6.8 DegQ family serine endoprotease compare
PFLU_RS30730 -1.4 -2.7 helix-turn-helix domain-containing protein compare
PFLU_RS09705 -1.4 -4.5 hypothetical protein compare
PFLU_RS21860 -1.4 -3.8 flagellar basal body rod protein FlgF compare
PFLU_RS21735 -1.4 -7.9 flagellar hook-length control protein FliK compare
PFLU_RS27645 -1.4 -9.6 8-amino-7-oxononanoate synthase compare
PFLU_RS28650 -1.4 -5.0 RNA pyrophosphohydrolase compare
PFLU_RS29310 -1.3 -1.0 accessory factor UbiK family protein compare
PFLU_RS19170 -1.3 -3.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS01315 -1.3 -2.7 Hsp33 family molecular chaperone HslO compare
PFLU_RS24085 -1.3 -2.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS28195 -1.3 -9.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS21570 -1.3 -2.5 exonuclease compare
PFLU_RS12635 -1.3 -1.4 conjugal transfer protein TraR compare
PFLU_RS27635 -1.3 -7.9 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS00065 -1.3 -6.6 lysophospholipid acyltransferase compare
PFLU_RS07275 -1.3 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS28325 -1.3 -4.6 energy transducer TonB compare
PFLU_RS25735 -1.3 -2.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS21820 -1.3 -7.9 flagellin compare
PFLU_RS23205 -1.3 -6.3 flagellar protein FlgN compare
PFLU_RS18665 -1.3 -2.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS04140 -1.3 -2.0 response regulator transcription factor compare
PFLU_RS14550 -1.3 -4.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25925 -1.3 -2.3 RnfH family protein compare
PFLU_RS23175 -1.3 -4.6 flagellar basal body rod protein FlgC compare
PFLU_RS21675 -1.2 -8.8 flagellar biosynthesis protein FlhA compare
PFLU_RS20625 -1.2 -1.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS21625 -1.2 -6.7 ParA family protein compare
PFLU_RS23180 -1.2 -6.0 flagellar basal body rod protein FlgB compare
PFLU_RS21660 -1.2 -7.1 RNA polymerase sigma factor FliA compare
PFLU_RS27630 -1.2 -4.9 dethiobiotin synthase compare
PFLU_RS17545 -1.2 -1.0 DUF465 domain-containing protein compare
PFLU_RS21780 -1.2 -3.0 flagellar hook-basal body complex protein FliE compare
PFLU_RS22600 -1.2 -1.8 RNA polymerase sigma factor SigX compare
PFLU_RS21725 -1.2 -4.8 flagellar motor switch protein FliM compare
PFLU_RS21805 -1.2 -7.8 flagellar export chaperone FliS compare
PFLU_RS04435 -1.2 -4.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS29900 -1.2 -7.2 DNA helicase II compare
PFLU_RS19175 -1.2 -5.1 trigger factor compare
PFLU_RS15310 -1.2 -2.0 YgdI/YgdR family lipoprotein compare
PFLU_RS19665 -1.2 -1.4 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS02625 -1.2 -7.9 ribonuclease R compare
PFLU_RS02370 -1.1 -4.7 glycosyltransferase compare
PFLU_RS19555 -1.1 -1.1 histidine phosphatase family protein compare
PFLU_RS07685 -1.1 -3.7 transcriptional repressor LexA compare
PFLU_RS28270 -1.1 -1.0 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS29550 -1.1 -4.9 ATP-dependent DNA helicase RecG compare
PFLU_RS21710 -1.1 -6.0 flagellar type III secretion system pore protein FliP compare
PFLU_RS25955 -1.1 -1.7 hypothetical protein compare
PFLU_RS25225 -1.1 -5.1 disulfide bond formation protein B compare
PFLU_RS21845 -1.1 -4.7 flagellar basal body P-ring protein FlgI compare
PFLU_RS13365 -1.1 -1.9 hypothetical protein compare
PFLU_RS15410 -1.1 -1.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS08490 -1.1 -1.8 DEAD/DEAH box helicase compare
PFLU_RS17080 -1.1 -2.0 FadR family transcriptional regulator compare
PFLU_RS21835 -1.1 -7.9 flagellar hook-associated protein FlgK compare
PFLU_RS03995 -1.1 -1.5 hypothetical protein compare
PFLU_RS06815 -1.1 -6.0 TetR family transcriptional regulator compare
PFLU_RS21775 -1.1 -5.7 flagellar basal body M-ring protein FliF compare
PFLU_RS21985 -1.1 -2.5 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS17450 -1.1 -4.4 carboxynorspermidine decarboxylase compare
PFLU_RS04195 -1.1 -3.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS07765 -1.1 -5.2 cupredoxin family protein compare
PFLU_RS08860 -1.1 -2.3 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS23165 -1.1 -8.4 flagellar hook protein FlgE compare
PFLU_RS04430 -1.1 -4.6 ATP-binding cassette domain-containing protein compare
PFLU_RS21830 -1.1 -8.3 flagellar hook-associated protein 3 compare
PFLU_RS30160 -1.1 -2.3 ParB/RepB/Spo0J family partition protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium succinate dibasic hexahydrate across organisms