Experiment set26S519 for Burkholderia phytofirmans PsJN

Compare to:

Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50

200 most important genes:

  gene name fitness t score description  
BPHYT_RS28485 -4.4 -1.2 GntR family transcriptional regulator compare
BPHYT_RS25780 -4.3 -1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS01455 -4.2 -1.2 peptide deformylase compare
BPHYT_RS08960 -4.1 -2.0 threonine synthase compare
BPHYT_RS07325 -3.9 -1.1 GntR family transcriptional regulator compare
BPHYT_RS14845 -3.6 -3.6 cysteine synthase compare
BPHYT_RS16880 -3.6 -2.2 malic enzyme compare
BPHYT_RS26390 -3.3 -0.9 antibiotic resistance protein compare
BPHYT_RS12615 -3.2 -1.2 dihydrodipicolinate synthase compare
BPHYT_RS01625 -3.2 -3.5 chemotaxis protein CheY compare
BPHYT_RS13390 -3.1 -1.2 IclR family transcriptional regulator compare
BPHYT_RS08850 -2.9 -1.8 transcriptional regulator compare
BPHYT_RS02965 -2.8 -3.3 membrane protein compare
BPHYT_RS13080 -2.8 -1.5 hypothetical protein compare
BPHYT_RS17240 -2.8 -1.3 cell division protein FtsW compare
BPHYT_RS04890 -2.7 -1.8 cobalamin biosynthesis protein CobD compare
BPHYT_RS17640 -2.6 -3.3 2-alkenal reductase compare
BPHYT_RS06610 -2.4 -2.2 triosephosphate isomerase compare
BPHYT_RS02590 -2.4 -8.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS23455 -2.4 -1.1 phosphorylase compare
BPHYT_RS09515 -2.4 -4.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS34815 -2.3 -2.7 ABC transporter compare
BPHYT_RS16710 -2.3 -1.1 LysR family transcriptional regulator compare
BPHYT_RS04290 -2.2 -2.5 glycosyl transferase family 2 compare
BPHYT_RS31910 -2.2 -1.5 hypothetical protein compare
BPHYT_RS18590 -2.2 -0.8 hypothetical protein compare
BPHYT_RS17035 -2.2 -3.7 sugar kinase compare
BPHYT_RS16255 -2.2 -4.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS15285 -2.2 -2.8 transcription elongation factor GreB compare
BPHYT_RS16270 -2.2 -2.9 phosphoglycerate kinase compare
BPHYT_RS16835 -2.1 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS10260 -2.1 -1.5 hypothetical protein compare
BPHYT_RS06335 -2.1 -1.4 CopG family transcriptional regulator compare
BPHYT_RS14185 -2.1 -1.7 transcription elongation factor GreA compare
BPHYT_RS29320 -2.1 -1.5 histidine kinase compare
BPHYT_RS15015 -2.0 -1.4 ArsR family transcriptional regulator compare
BPHYT_RS27145 -2.0 -2.3 TetR family transcriptional regulator compare
BPHYT_RS16180 -1.9 -0.9 TetR family transcriptional regulator compare
BPHYT_RS16840 -1.9 -4.5 transketolase compare
BPHYT_RS23270 -1.9 -1.4 enoyl-CoA hydratase compare
BPHYT_RS08565 -1.8 -0.9 dihydroorotate dehydrogenase compare
BPHYT_RS30490 -1.7 -1.1 2-haloalkanoic acid dehalogenase compare
BPHYT_RS11125 -1.7 -1.3 alkylhydroperoxidase compare
BPHYT_RS11075 -1.7 -2.9 membrane protein compare
BPHYT_RS26730 -1.7 -3.4 membrane protein compare
BPHYT_RS32395 -1.7 -1.0 hypothetical protein compare
BPHYT_RS25540 -1.7 -2.5 phosphohydrolase compare
BPHYT_RS09825 -1.6 -1.4 Fe-S protein compare
BPHYT_RS09500 -1.6 -4.2 glucose-6-phosphate isomerase compare
BPHYT_RS15075 -1.6 -2.3 dihydrokaempferol 4-reductase compare
BPHYT_RS04285 -1.6 -2.1 rhamnosyltransferase compare
BPHYT_RS10285 -1.6 -1.4 hypothetical protein compare
BPHYT_RS30055 -1.6 -2.3 hypothetical protein compare
BPHYT_RS16340 -1.6 -6.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS01620 -1.6 -7.5 sensor histidine kinase compare
BPHYT_RS09905 -1.6 -1.1 hypothetical protein compare
BPHYT_RS03725 -1.6 -1.5 serine hydroxymethyltransferase compare
BPHYT_RS06550 -1.6 -3.4 acetolactate synthase compare
BPHYT_RS10945 -1.6 -1.5 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS33920 -1.5 -9.3 type II citrate synthase compare
BPHYT_RS26470 -1.5 -1.0 MFS transporter compare
BPHYT_RS05235 -1.5 -1.1 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS15620 -1.5 -3.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03640 -1.5 -2.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS19435 -1.5 -3.3 16S rRNA methyltransferase compare
BPHYT_RS13160 -1.5 -1.2 membrane protein compare
BPHYT_RS09650 -1.5 -1.1 hypothetical protein compare
BPHYT_RS17165 -1.4 -2.1 cell division protein ZapD compare
BPHYT_RS03410 -1.4 -1.9 queuine tRNA-ribosyltransferase compare
BPHYT_RS08235 -1.4 -0.8 nucleoprotein, Hfg, host factor I compare
BPHYT_RS26855 -1.4 -2.0 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS20865 -1.4 -2.2 2-hydroxyacid dehydrogenase compare
BPHYT_RS31700 -1.4 -2.8 porin compare
BPHYT_RS23990 -1.4 -1.3 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS07480 -1.4 -1.0 FAD-dependent oxidoreductase compare
BPHYT_RS15710 -1.4 -1.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS22940 -1.4 -1.5 pilus assembly protein TadE compare
BPHYT_RS12985 -1.4 -1.2 amino acid acetyltransferase compare
BPHYT_RS11425 -1.4 -1.9 chemotaxis protein compare
BPHYT_RS29750 -1.4 -3.2 phosphoenolpyruvate phosphomutase compare
BPHYT_RS20845 -1.4 -1.2 peroxidase compare
BPHYT_RS22885 -1.4 -2.1 hypothetical protein compare
BPHYT_RS32880 -1.4 -1.2 alanine acetyltransferase compare
BPHYT_RS25875 -1.4 -0.9 type III secretion protein compare
BPHYT_RS24315 -1.3 -1.6 phosphoribosyltransferase compare
BPHYT_RS11565 -1.3 -2.2 nitrate reductase compare
BPHYT_RS34745 -1.3 -1.1 hypothetical protein compare
BPHYT_RS10040 -1.3 -0.8 hypothetical protein compare
BPHYT_RS10215 -1.3 -1.0 sulfate transporter compare
BPHYT_RS04730 -1.3 -3.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS14190 -1.3 -5.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS02860 -1.3 -0.9 membrane protein compare
BPHYT_RS19545 -1.3 -3.1 nuclear protein SET compare
BPHYT_RS16345 -1.3 -3.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS04965 -1.3 -6.5 ATP-binding protein compare
BPHYT_RS34025 -1.3 -1.8 hypothetical protein compare
BPHYT_RS08715 -1.3 -1.9 adenylyl-sulfate kinase compare
BPHYT_RS06375 -1.2 -4.4 ribonuclease compare
BPHYT_RS17075 -1.2 -1.5 ABC transporter permease compare
BPHYT_RS33580 -1.2 -5.1 geranyltranstransferase compare
BPHYT_RS06685 -1.2 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS26080 -1.2 -0.9 ABC transporter ATPase compare
BPHYT_RS10680 -1.2 -2.0 LysR family transcriptional regulator compare
BPHYT_RS02975 -1.2 -2.9 membrane protein compare
BPHYT_RS34810 -1.2 -4.1 RND transporter compare
BPHYT_RS12550 -1.2 -0.8 GTP-binding protein HflX compare
BPHYT_RS25980 -1.2 -0.6 urea carboxylase compare
BPHYT_RS02865 -1.2 -2.0 hypothetical protein compare
BPHYT_RS28575 -1.2 -0.6 transcriptional regulator compare
BPHYT_RS20665 -1.2 -1.1 LysR family transcriptional regulator compare
BPHYT_RS34080 -1.2 -2.0 flagellar motor protein MotB compare
BPHYT_RS21335 -1.2 -2.0 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS27160 -1.2 -1.1 hypothetical protein compare
BPHYT_RS11285 -1.2 -1.3 LacI family transcription regulator compare
BPHYT_RS31415 -1.2 -1.3 amino acid ABC transporter permease compare
BPHYT_RS14895 -1.1 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS20235 -1.1 -3.9 iron ABC transporter compare
BPHYT_RS33215 -1.1 -3.7 glycosyltransferase compare
BPHYT_RS06975 -1.1 -1.1 glutamate racemase compare
BPHYT_RS10165 -1.1 -0.6 transcriptional regulator compare
BPHYT_RS14195 -1.1 -1.8 carbamoyl phosphate synthase small subunit compare
BPHYT_RS12055 -1.1 -7.6 phosphoenolpyruvate synthase compare
BPHYT_RS31060 -1.1 -0.9 capsular polysaccharide biosynthesis protein compare
BPHYT_RS13835 -1.1 -1.0 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS09280 -1.1 -0.8 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS26570 -1.1 -0.8 5'-nucleotidase compare
BPHYT_RS33990 -1.1 -0.8 ATPase compare
BPHYT_RS07290 -1.1 -2.3 hypothetical protein compare
BPHYT_RS33965 -1.1 -1.4 methylcitrate synthase compare
BPHYT_RS12990 -1.1 -1.3 iron transporter compare
BPHYT_RS22930 -1.1 -1.2 type II secretion system protein compare
BPHYT_RS08385 -1.1 -1.0 secretion protein compare
BPHYT_RS07050 -1.0 -1.2 membrane protein compare
BPHYT_RS36525 -1.0 -4.3 hypothetical protein compare
BPHYT_RS02155 -1.0 -2.7 dithiobiotin synthetase compare
BPHYT_RS34655 -1.0 -1.1 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS07350 -1.0 -1.3 ABC transporter ATP-binding protein compare
BPHYT_RS20935 -1.0 -1.3 dehydrogenase compare
BPHYT_RS02150 -1.0 -2.4 biotin synthase compare
BPHYT_RS34635 -1.0 -1.8 50S ribosomal protein L21 compare
BPHYT_RS31050 -1.0 -0.6 epimerase compare
BPHYT_RS28625 -1.0 -2.0 major facilitator transporter compare
BPHYT_RS30750 -1.0 -0.9 GntR family transcriptional regulator compare
BPHYT_RS15465 -1.0 -1.7 tRNA-Gly compare
BPHYT_RS16195 -1.0 -2.4 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS33125 -1.0 -1.5 hypothetical protein compare
BPHYT_RS24095 -1.0 -2.7 membrane protein compare
BPHYT_RS27030 -1.0 -1.0 transcriptional regulator compare
BPHYT_RS06325 -1.0 -2.5 ATPase compare
BPHYT_RS09330 -1.0 -6.6 phytoene synthase compare
BPHYT_RS23275 -1.0 -2.3 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS10345 -1.0 -0.7 flagellar motor protein MotB compare
BPHYT_RS06405 -1.0 -5.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS20750 -1.0 -1.4 LacI family transcriptional regulator compare
BPHYT_RS23350 -1.0 -1.5 NAD-dependent epimerase/dehydratase compare
BPHYT_RS05825 -0.9 -1.3 hypothetical protein compare
BPHYT_RS20520 -0.9 -1.0 transcriptional regulator compare
BPHYT_RS03900 -0.9 -0.8 phospholipid-binding protein compare
BPHYT_RS23445 -0.9 -1.2 hexuronate transporter compare
BPHYT_RS23100 -0.9 -1.5 sugar ABC transporter substrate-binding protein compare
BPHYT_RS14855 -0.9 -1.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS12840 -0.9 -1.9 pyruvate dehydrogenase compare
BPHYT_RS04615 -0.9 -3.3 urease accessory protein UreD compare
BPHYT_RS20690 -0.9 -1.8 ABC transporter permease compare
BPHYT_RS11310 -0.9 -0.6 LysR family transcriptional regulator compare
BPHYT_RS36385 -0.9 -1.0 TetR family transcriptional regulator compare
BPHYT_RS30140 -0.9 -0.8 3-methylitaconate isomerase compare
BPHYT_RS16085 -0.9 -2.8 DeoR faimly transcriptional regulator compare
BPHYT_RS05405 -0.9 -2.0 GCN5 family acetyltransferase compare
BPHYT_RS18820 -0.9 -1.4 flagellar biosynthesis protein FliO compare
BPHYT_RS11480 -0.9 -2.1 heme ABC transporter ATP-binding protein compare
BPHYT_RS31470 -0.9 -1.2 NAD(P)H dehydrogenase (quinone) compare
BPHYT_RS26375 -0.9 -1.7 ATPase AAA compare
BPHYT_RS09480 -0.9 -0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS35650 -0.9 -1.8 DSBA oxidoreductase compare
BPHYT_RS06530 -0.9 -1.7 membrane protein compare
BPHYT_RS31715 -0.9 -2.4 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS34805 -0.9 -3.6 ABC transporter compare
BPHYT_RS20180 -0.9 -2.1 sugar ABC transporter substrate-binding protein compare
BPHYT_RS02130 -0.9 -2.4 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS03785 -0.9 -1.9 IclR family transcriptional regulator compare
BPHYT_RS07515 -0.9 -1.6 photosystem reaction center subunit H compare
BPHYT_RS20060 -0.9 -0.9 hypothetical protein compare
BPHYT_RS25080 -0.9 -1.1 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS18340 -0.9 -1.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS17100 -0.9 -3.1 RNA pyrophosphohydrolase compare
BPHYT_RS33375 -0.9 -1.7 membrane protein compare
BPHYT_RS06175 -0.9 -2.5 LPS biosynthesis compare
BPHYT_RS18525 -0.9 -2.3 hypothetical protein compare
BPHYT_RS16210 -0.9 -1.6 peptidase compare
BPHYT_RS27985 -0.9 -2.4 LacI family transcriptional regulator compare
BPHYT_RS09195 -0.9 -1.3 hypothetical protein compare
BPHYT_RS26035 -0.9 -2.2 ABC transporter ATP-binding protein compare
BPHYT_RS04725 -0.9 -4.3 sulfite reductase compare
BPHYT_RS35460 -0.9 -3.0 acyl-CoA dehydrogenase compare
BPHYT_RS28415 -0.9 -1.9 hypothetical protein compare
BPHYT_RS06390 -0.9 -1.7 ribosome-associated protein IOJAP compare
BPHYT_RS06190 -0.9 -2.0 heptosyltransferase compare
BPHYT_RS14920 -0.9 -2.8 hypothetical protein compare
BPHYT_RS07130 -0.9 -0.9 biopolymer transporter ExbD compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in tn7 efficiency experiments