Experiment set26S518 for Burkholderia phytofirmans PsJN

Compare to:

Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS08150 +1.7 1.8 membrane protein compare
BPHYT_RS26435 +1.5 1.5 hypothetical protein compare
BPHYT_RS27060 +1.4 3.1 photosystem reaction center subunit H compare
BPHYT_RS33150 +1.4 1.6 beta-lactamase compare
BPHYT_RS11040 +1.4 1.6 GntR family transcriptional regulator compare
BPHYT_RS10470 +1.3 3.3 hypothetical protein compare
BPHYT_RS05650 +1.3 1.6 hypothetical protein compare
BPHYT_RS26025 +1.3 1.2 hypothetical protein compare
BPHYT_RS21485 +1.3 1.3 hypothetical protein compare
BPHYT_RS05705 +1.2 1.5 hypothetical protein compare
BPHYT_RS23460 +1.2 1.4 AraC family transcriptional regulator compare
BPHYT_RS11930 +1.2 2.1 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS28575 +1.2 1.2 transcriptional regulator compare
BPHYT_RS01435 +1.1 9.6 LysR family transcriptional regulator compare
BPHYT_RS29395 +1.1 1.9 hydroxypyruvate isomerase compare
BPHYT_RS08135 +1.1 1.8 hypothetical protein compare
BPHYT_RS23895 +1.1 2.0 hypothetical protein compare
BPHYT_RS11245 +1.1 3.0 ATPase compare
BPHYT_RS29825 +1.1 1.8 glycosyl transferase family 1 compare
BPHYT_RS13565 +1.0 2.1 bacterioferritin compare
BPHYT_RS22860 +1.0 1.2 chemotaxis protein CheY compare
BPHYT_RS11310 +1.0 1.2 LysR family transcriptional regulator compare
BPHYT_RS29520 +1.0 1.3 hypothetical protein compare
BPHYT_RS22815 +1.0 1.4 TonB-denpendent receptor compare
BPHYT_RS18590 +1.0 0.9 hypothetical protein compare
BPHYT_RS03455 +1.0 2.2 paraquat-inducible protein A compare
BPHYT_RS26570 +1.0 1.3 5'-nucleotidase compare
BPHYT_RS07635 +1.0 2.0 alkanesulfonate monooxygenase compare
BPHYT_RS28075 +1.0 1.0 cytochrome B561 compare
BPHYT_RS10040 +1.0 1.1 hypothetical protein compare
BPHYT_RS15320 +1.0 2.3 hypothetical protein compare
BPHYT_RS07415 +1.0 2.1 hypothetical protein compare
BPHYT_RS31225 +1.0 3.0 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS29800 +1.0 2.6 hypothetical protein compare
BPHYT_RS29855 +1.0 1.0 protein-tyrosine-phosphatase compare
BPHYT_RS10950 +0.9 2.2 transcriptional regulator compare
BPHYT_RS12590 +0.9 1.7 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS04060 +0.9 2.4 glycosyl transferase compare
BPHYT_RS15810 +0.9 1.2 citrate synthase compare
BPHYT_RS19260 +0.9 1.3 hypothetical protein compare
BPHYT_RS23370 +0.9 2.5 glycosyl transferase family 1 compare
BPHYT_RS09205 +0.9 2.7 cytochrome P450 compare
BPHYT_RS28790 +0.9 1.9 membrane protein compare
BPHYT_RS08410 +0.9 1.0 dehydrogenase compare
BPHYT_RS02480 +0.9 0.8 alkaline phosphatase compare
BPHYT_RS10690 +0.9 1.8 Rieske (2Fe-2S) protein compare
BPHYT_RS04710 +0.9 1.1 hypothetical protein compare
BPHYT_RS21625 +0.9 0.9 LysR family transcriptional regulator compare
BPHYT_RS16815 +0.9 1.9 ureidoglycolate hydrolase compare
BPHYT_RS02570 +0.9 7.0 phosphocarrier protein HPr compare
BPHYT_RS33515 +0.9 6.8 porin compare
BPHYT_RS05895 +0.9 1.1 hypothetical protein compare
BPHYT_RS11265 +0.9 1.6 hypothetical protein compare
BPHYT_RS15775 +0.9 1.8 peptide ABC transporter permease compare
BPHYT_RS23930 +0.9 2.4 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS11010 +0.9 1.4 chromate transporter compare
BPHYT_RS09395 +0.8 1.1 ABC transporter permease compare
BPHYT_RS36090 +0.8 2.4 hypothetical protein compare
BPHYT_RS30515 +0.8 1.6 sorbose dehydrogenase compare
BPHYT_RS09755 +0.8 1.6 glycosyl transferase family 1 compare
BPHYT_RS09765 +0.8 1.3 G-D-S-L family lipolytic protein compare
BPHYT_RS17735 +0.8 2.9 ABC transporter ATP-binding protein compare
BPHYT_RS27920 +0.8 0.8 tricarballylate utilization protein B compare
BPHYT_RS16855 +0.8 4.3 16S rRNA methyltransferase compare
BPHYT_RS17725 +0.8 6.1 BolA family transcriptional regulator compare
BPHYT_RS14550 +0.8 0.8 tRNA-Asn compare
BPHYT_RS12280 +0.8 1.1 RNA helicase compare
BPHYT_RS11900 +0.8 2.2 LysR family transcriptional regulator compare
BPHYT_RS14370 +0.8 1.9 ribonuclease III compare
BPHYT_RS00750 +0.8 1.7 SpoVT/AbrB domain-containing protein compare
BPHYT_RS29245 +0.8 1.9 peptidase M23 compare
BPHYT_RS11955 +0.8 0.7 hemolysin D compare
BPHYT_RS22100 +0.8 2.8 ribonuclease BN compare
BPHYT_RS33705 +0.8 2.7 oxidoreductase compare
BPHYT_RS27545 +0.8 1.5 histidine kinase compare
BPHYT_RS33820 +0.8 5.6 histidine kinase compare
BPHYT_RS35945 +0.8 2.0 response regulator receiver compare
BPHYT_RS12160 +0.8 2.0 peptide deformylase compare
BPHYT_RS23955 +0.8 2.3 LysR family transcriptional regulator compare
BPHYT_RS24965 +0.8 1.2 hypothetical protein compare
BPHYT_RS25950 +0.8 2.3 sensor histidine kinase compare
BPHYT_RS07815 +0.8 2.6 phosphonate transporter compare
BPHYT_RS20025 +0.8 1.5 crotonase compare
BPHYT_RS15360 +0.7 2.5 hypothetical protein compare
BPHYT_RS31755 +0.7 2.4 amino acid ABC transporter ATPase compare
BPHYT_RS04595 +0.7 1.3 cytoplasmic protein compare
BPHYT_RS20775 +0.7 2.1 3-ketoacyl-ACP reductase compare
BPHYT_RS09525 +0.7 1.4 toxin HipA compare
BPHYT_RS05320 +0.7 0.8 beta-lactamase compare
BPHYT_RS00505 +0.7 3.5 glyoxalase compare
BPHYT_RS20630 +0.7 1.5 patatin compare
BPHYT_RS07190 +0.7 2.4 acetyltransferase compare
BPHYT_RS06435 +0.7 1.4 hypothetical protein compare
BPHYT_RS20805 +0.7 1.8 LacI family transcriptional regulator compare
BPHYT_RS30645 +0.7 1.3 hypothetical protein compare
BPHYT_RS20220 +0.7 0.8 antibiotic synthesis protein MbtH compare
BPHYT_RS25405 +0.7 1.7 CoA-transferase compare
BPHYT_RS07465 +0.7 1.6 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS33905 +0.7 0.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS23875 +0.7 0.6 sugar ABC transporter ATP-binding protein compare
BPHYT_RS33160 +0.7 1.7 hypothetical protein compare
BPHYT_RS29160 +0.7 3.0 transporter compare
BPHYT_RS34220 +0.7 1.5 L-fucono-1,5-lactonase (from data) compare
BPHYT_RS10710 +0.7 1.2 sensor histidine kinase compare
BPHYT_RS07050 +0.7 1.1 membrane protein compare
BPHYT_RS12550 +0.7 0.8 GTP-binding protein HflX compare
BPHYT_RS10340 +0.7 1.8 sensor protein Chase2 compare
BPHYT_RS29100 +0.7 1.0 ketosteroid isomerase compare
BPHYT_RS18965 +0.7 1.6 chemotaxis protein CheY compare
BPHYT_RS22055 +0.7 1.7 DNA-binding protein compare
BPHYT_RS35730 +0.7 3.8 hypothetical protein compare
BPHYT_RS24135 +0.7 2.5 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS24760 +0.7 1.9 cytochrome B561 compare
BPHYT_RS16495 +0.7 5.7 glycerol kinase compare
BPHYT_RS11960 +0.7 0.8 MarR family transcriptional regulator compare
BPHYT_RS24655 +0.7 1.4 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS22520 +0.7 1.4 RND transporter compare
BPHYT_RS19570 +0.7 6.3 sodium/hydrogen exchanger compare
BPHYT_RS26300 +0.7 0.9 ATP-dependent DNA ligase compare
BPHYT_RS05795 +0.7 2.2 hypothetical protein compare
BPHYT_RS22190 +0.7 1.4 nucleoid-structuring protein H-NS compare
BPHYT_RS36275 +0.7 2.1 hypothetical protein compare
BPHYT_RS33170 +0.7 1.7 acetyltransferase compare
BPHYT_RS23315 +0.7 1.0 hypothetical protein compare
BPHYT_RS02100 +0.7 1.6 AsnC family transcriptional regulator compare
BPHYT_RS25000 +0.7 1.4 MFS transporter compare
BPHYT_RS27370 +0.7 1.1 CoA transferase compare
BPHYT_RS03520 +0.7 1.5 ATP--cobalamin adenosyltransferase compare
BPHYT_RS35750 +0.7 1.0 hypothetical protein compare
BPHYT_RS31460 +0.7 1.8 hypothetical protein compare
BPHYT_RS24975 +0.7 1.7 RNA polymerase sigma24 factor compare
BPHYT_RS28535 +0.7 0.5 response regulator receiver compare
BPHYT_RS03755 +0.7 1.1 pilus assembly protein PilE compare
BPHYT_RS11555 +0.7 0.8 allantoinase compare
BPHYT_RS19565 +0.7 5.1 gamma-glutamyl:cysteine ligase compare
BPHYT_RS00350 +0.7 0.8 hypothetical protein compare
BPHYT_RS07600 +0.7 2.3 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS05190 +0.7 2.6 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS28680 +0.7 1.5 porin compare
BPHYT_RS01170 +0.7 1.6 hypothetical protein compare
BPHYT_RS02575 +0.7 5.1 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS24745 +0.7 2.0 transcriptional regulator compare
BPHYT_RS35175 +0.7 1.4 nitroreductase compare
BPHYT_RS05040 +0.7 1.8 sugar ABC transporter ATPase compare
BPHYT_RS27200 +0.7 1.7 pyridoxal 4-dehydrogenase compare
BPHYT_RS19760 +0.7 1.2 AraC family transcriptional regulator compare
BPHYT_RS29975 +0.6 2.0 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS07255 +0.6 1.3 4-oxalocrotonate decarboxylase compare
BPHYT_RS15035 +0.6 1.8 hypothetical protein compare
BPHYT_RS35310 +0.6 1.0 GCN5 family N-acetyltransferase compare
BPHYT_RS00770 +0.6 0.9 conjugal transfer protein TraC compare
BPHYT_RS30365 +0.6 0.8 beta-lactamase compare
BPHYT_RS28065 +0.6 0.9 hypothetical protein compare
BPHYT_RS00380 +0.6 2.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS29545 +0.6 0.9 osmotically inducible protein C compare
BPHYT_RS30490 +0.6 0.8 2-haloalkanoic acid dehalogenase compare
BPHYT_RS28860 +0.6 0.6 haloacid dehalogenase compare
BPHYT_RS33535 +0.6 5.6 RNA polymerase sigma factor RpoD compare
BPHYT_RS21630 +0.6 2.0 NmrA family transcriptional regulator compare
BPHYT_RS31900 +0.6 1.7 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS27790 +0.6 2.0 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS25160 +0.6 1.3 NAD/NADP-dependent betaine aldehyde dehydrogenase compare
BPHYT_RS25465 +0.6 2.0 1,2-oxophytodienoate reductase compare
BPHYT_RS24540 +0.6 1.2 DMSO reductase compare
BPHYT_RS04050 +0.6 2.7 group 1 glycosyl transferase compare
BPHYT_RS04035 +0.6 1.3 transferase compare
BPHYT_RS28280 +0.6 0.6 hypothetical protein compare
BPHYT_RS28740 +0.6 2.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS36240 +0.6 2.3 hypothetical protein compare
BPHYT_RS00960 +0.6 0.8 recombinase RecA compare
BPHYT_RS28255 +0.6 0.6 hypothetical protein compare
BPHYT_RS15470 +0.6 2.8 tRNA (guanine-N(7)-)-methyltransferase compare
BPHYT_RS29620 +0.6 0.5 hypothetical protein compare
BPHYT_RS35160 +0.6 1.9 PKHD-type hydroxylase compare
BPHYT_RS29080 +0.6 2.6 transporter compare
BPHYT_RS24915 +0.6 3.7 ubiquinol oxidase subunit II compare
BPHYT_RS35100 +0.6 1.5 ABC transporter substrate-binding protein compare
BPHYT_RS34155 +0.6 1.1 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS05245 +0.6 2.0 hypothetical protein compare
BPHYT_RS32540 +0.6 1.3 hypothetical protein compare
BPHYT_RS12985 +0.6 1.0 amino acid acetyltransferase compare
BPHYT_RS30635 +0.6 1.1 D-aminopeptidase compare
BPHYT_RS09660 +0.6 3.2 trehalose-6-phosphate synthase compare
BPHYT_RS07230 +0.6 1.2 LysR family transcriptional regulator compare
BPHYT_RS19985 +0.6 0.5 CoA-transferase compare
BPHYT_RS24685 +0.6 1.8 LysR family transcriptional regulator compare
BPHYT_RS27950 +0.6 1.2 dihydroxyacetone kinase compare
BPHYT_RS20670 +0.6 1.6 carbon-nitrogen hydrolase compare
BPHYT_RS04335 +0.6 0.8 membrane protein compare
BPHYT_RS09370 +0.6 2.1 FAD-dependent oxidoreductase compare
BPHYT_RS01825 +0.6 1.6 sugar ABC transporter substrate-binding protein compare
BPHYT_RS22425 +0.6 1.8 GntR family transcriptional regulator compare
BPHYT_RS26705 +0.6 1.2 hypothetical protein compare
BPHYT_RS27270 +0.6 1.3 photosystem reaction center subunit H compare
BPHYT_RS27240 +0.6 1.7 N-ethylmaleimide reductase compare
BPHYT_RS32145 +0.6 2.6 type IV secretory pathway protein VirD4 compare
BPHYT_RS03185 +0.6 2.5 thiopurine S-methyltransferase compare
BPHYT_RS26820 +0.6 0.5 LysR family transcriptional regulator compare
BPHYT_RS07095 +0.6 1.1 LysR family transcriptional regulator compare
BPHYT_RS13765 +0.6 1.8 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in tn7 efficiency experiments