Experiment set26S516 for Burkholderia phytofirmans PsJN

Compare to:

Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS27370 +1.8 2.6 CoA transferase compare
BPHYT_RS28535 +1.7 1.4 response regulator receiver compare
BPHYT_RS23650 +1.7 1.5 hypothetical protein compare
BPHYT_RS27270 +1.6 1.8 photosystem reaction center subunit H compare
BPHYT_RS21495 +1.5 1.6 ABC transporter compare
BPHYT_RS13320 +1.5 1.2 allantoate amidohydrolase compare
BPHYT_RS06510 +1.4 2.4 DeoR faimly transcriptional regulator compare
BPHYT_RS23600 +1.4 1.9 hypothetical protein compare
BPHYT_RS12590 +1.4 2.0 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS04595 +1.3 1.5 cytoplasmic protein compare
BPHYT_RS08130 +1.3 1.7 transposase compare
BPHYT_RS23525 +1.3 1.7 hypothetical protein compare
BPHYT_RS28830 +1.3 1.2 LysR family transcriptional regulator compare
BPHYT_RS35275 +1.3 2.3 acetyltransferase compare
BPHYT_RS11635 +1.3 0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS22230 +1.3 1.7 LuxR family transcriptional regulator compare
BPHYT_RS01435 +1.2 11.2 LysR family transcriptional regulator compare
BPHYT_RS34765 +1.2 2.1 chemotaxis protein compare
BPHYT_RS27680 +1.2 1.6 arginine deiminase compare
BPHYT_RS22815 +1.2 1.4 TonB-denpendent receptor compare
BPHYT_RS11500 +1.2 2.0 ABC transporter permease compare
BPHYT_RS32815 +1.2 2.2 sugar ABC transporter compare
BPHYT_RS30415 +1.2 2.2 AraC family transcriptional regulator compare
BPHYT_RS20120 +1.2 1.2 porin compare
BPHYT_RS25405 +1.2 1.5 CoA-transferase compare
BPHYT_RS28025 +1.2 0.9 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS13565 +1.2 2.0 bacterioferritin compare
BPHYT_RS08765 +1.1 0.9 ABC transporter ATP-binding protein compare
BPHYT_RS11900 +1.1 1.3 LysR family transcriptional regulator compare
BPHYT_RS23225 +1.1 1.9 hypothetical protein compare
BPHYT_RS33610 +1.1 1.2 DNA polymerase I compare
BPHYT_RS25645 +1.1 2.3 dehydrogenase compare
BPHYT_RS30635 +1.1 2.5 D-aminopeptidase compare
BPHYT_RS23395 +1.1 1.0 glycosyl transferase compare
BPHYT_RS09755 +1.1 1.4 glycosyl transferase family 1 compare
BPHYT_RS07095 +1.1 1.9 LysR family transcriptional regulator compare
BPHYT_RS05585 +1.1 2.2 hypothetical protein compare
BPHYT_RS33385 +1.1 1.7 major facilitator superfamily protein compare
BPHYT_RS28575 +1.0 0.8 transcriptional regulator compare
BPHYT_RS08405 +1.0 1.1 hypothetical protein compare
BPHYT_RS30860 +1.0 1.4 sugar ABC transporter permease compare
BPHYT_RS25005 +1.0 0.9 FMN reductase compare
BPHYT_RS28370 +1.0 1.1 peroxidase compare
BPHYT_RS11745 +1.0 0.9 (2Fe-2S)-binding protein compare
BPHYT_RS31890 +1.0 1.3 transposase compare
BPHYT_RS05285 +1.0 1.3 hypothetical protein compare
BPHYT_RS08905 +1.0 1.5 peroxiredoxin compare
BPHYT_RS34775 +1.0 3.5 diguanylate cyclase compare
BPHYT_RS01950 +1.0 4.5 phosphoheptose isomerase compare
BPHYT_RS30085 +1.0 1.1 hypothetical protein compare
BPHYT_RS01120 +1.0 2.0 plasmid partitioning protein ParB compare
BPHYT_RS02480 +1.0 1.3 alkaline phosphatase compare
BPHYT_RS34280 +1.0 1.3 hypothetical protein compare
BPHYT_RS25870 +1.0 0.7 type III secretion system ATPase compare
BPHYT_RS33905 +1.0 1.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS13410 +1.0 1.8 FAD-dependent oxidoreductase compare
BPHYT_RS00790 +1.0 1.2 conjugal transfer protein TraF compare
BPHYT_RS09355 +1.0 1.6 LysR family transcriptional regulator compare
BPHYT_RS29920 +1.0 1.0 hypothetical protein compare
BPHYT_RS26705 +1.0 1.4 hypothetical protein compare
BPHYT_RS10900 +1.0 1.7 histidine kinase compare
BPHYT_RS32400 +1.0 1.7 TetR family transcriptional regulator compare
BPHYT_RS21905 +0.9 1.0 IclR family transcriptional regulator compare
BPHYT_RS10250 +0.9 2.5 inosine-5-monophosphate dehydrogenase compare
BPHYT_RS26540 +0.9 1.0 hypothetical protein compare
BPHYT_RS29475 +0.9 1.2 carbon-phosphorus lyase complex subunit PhnJ compare
BPHYT_RS32110 +0.9 2.2 transcriptional regulator compare
BPHYT_RS09810 +0.9 1.4 hypothetical protein compare
BPHYT_RS27405 +0.9 2.7 aldehyde dehydrogenase compare
BPHYT_RS21130 +0.9 2.3 F420-dependent oxidoreductase compare
BPHYT_RS26325 +0.9 2.7 ATPase compare
BPHYT_RS06765 +0.9 2.1 glutathione S-transferase compare
BPHYT_RS01170 +0.9 1.6 hypothetical protein compare
BPHYT_RS19565 +0.9 7.2 gamma-glutamyl:cysteine ligase compare
BPHYT_RS03755 +0.9 1.4 pilus assembly protein PilE compare
BPHYT_RS04905 +0.9 2.8 quinol oxidase compare
BPHYT_RS16855 +0.9 7.1 16S rRNA methyltransferase compare
BPHYT_RS00340 +0.9 2.3 hypothetical protein compare
BPHYT_RS07290 +0.9 1.7 hypothetical protein compare
BPHYT_RS09870 +0.9 1.5 membrane protein compare
BPHYT_RS31400 +0.9 0.9 methyl-accepting chemotaxis protein compare
BPHYT_RS33990 +0.9 0.9 ATPase compare
BPHYT_RS24975 +0.9 1.8 RNA polymerase sigma24 factor compare
BPHYT_RS04060 +0.8 1.7 glycosyl transferase compare
BPHYT_RS07220 +0.8 1.5 GCN5 family acetyltransferase compare
BPHYT_RS09730 +0.8 2.3 exopolysaccharide biosynthesis protein compare
BPHYT_RS01660 +0.8 2.6 hypothetical protein compare
BPHYT_RS26465 +0.8 0.8 metallophosphoesterase compare
BPHYT_RS28545 +0.8 1.3 acetamidase compare
BPHYT_RS14135 +0.8 1.0 phosphate transporter permease subunit PtsA compare
BPHYT_RS31460 +0.8 1.2 hypothetical protein compare
BPHYT_RS33515 +0.8 6.6 porin compare
BPHYT_RS03030 +0.8 2.4 cytochrome C compare
BPHYT_RS22540 +0.8 0.8 metal ABC transporter permease compare
BPHYT_RS28715 +0.8 1.1 cupin compare
BPHYT_RS17725 +0.8 3.6 BolA family transcriptional regulator compare
BPHYT_RS27375 +0.8 2.5 shikimate 5-dehydrogenase compare
BPHYT_RS27895 +0.8 1.5 enoyl-CoA hydratase compare
BPHYT_RS34100 +0.8 1.6 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS29160 +0.8 2.4 transporter compare
BPHYT_RS22755 +0.8 1.5 LacI family transcription regulator compare
BPHYT_RS27175 +0.8 0.6 DNA-binding protein compare
BPHYT_RS31205 +0.8 1.4 peptide ABC transporter ATP-binding protein compare
BPHYT_RS30225 +0.8 1.4 AsnC family transcriptional regulator compare
BPHYT_RS25135 +0.8 0.9 hypothetical protein compare
BPHYT_RS23465 +0.8 2.3 aliphatic nitrilase compare
BPHYT_RS27200 +0.8 2.4 pyridoxal 4-dehydrogenase compare
BPHYT_RS30650 +0.8 2.2 hypothetical protein compare
BPHYT_RS29500 +0.8 1.3 hypothetical protein compare
BPHYT_RS22145 +0.8 1.4 phosphoesterase compare
BPHYT_RS25950 +0.8 2.2 sensor histidine kinase compare
BPHYT_RS29675 +0.8 1.6 flagellar motor protein MotB compare
BPHYT_RS05245 +0.8 1.6 hypothetical protein compare
BPHYT_RS19985 +0.8 0.6 CoA-transferase compare
BPHYT_RS08415 +0.8 0.8 hypothetical protein compare
BPHYT_RS29080 +0.8 2.5 transporter compare
BPHYT_RS22285 +0.8 1.7 hypothetical protein compare
BPHYT_RS24810 +0.8 1.7 hypothetical protein compare
BPHYT_RS20355 +0.8 1.0 ABC transporter substrate-binding protein compare
BPHYT_RS20885 +0.8 1.4 nuclear protein SET compare
BPHYT_RS24185 +0.8 1.4 C4-dicarboxylate ABC transporter permease compare
BPHYT_RS02365 +0.7 1.0 hypothetical protein compare
BPHYT_RS12230 +0.7 0.9 hypothetical protein compare
BPHYT_RS11890 +0.7 1.8 hypothetical protein compare
BPHYT_RS30995 +0.7 0.6 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS30515 +0.7 1.2 sorbose dehydrogenase compare
BPHYT_RS36275 +0.7 1.4 hypothetical protein compare
BPHYT_RS20305 +0.7 2.1 hypothetical protein compare
BPHYT_RS31470 +0.7 1.1 NAD(P)H dehydrogenase (quinone) compare
BPHYT_RS11310 +0.7 0.7 LysR family transcriptional regulator compare
BPHYT_RS10135 +0.7 0.5 hypothetical protein compare
BPHYT_RS18965 +0.7 1.4 chemotaxis protein CheY compare
BPHYT_RS23860 +0.7 0.8 malonic semialdehyde reductase compare
BPHYT_RS10040 +0.7 0.6 hypothetical protein compare
BPHYT_RS15775 +0.7 1.7 peptide ABC transporter permease compare
BPHYT_RS00955 +0.7 1.6 DNA polymerase compare
BPHYT_RS05830 +0.7 2.6 hypothetical protein compare
BPHYT_RS33820 +0.7 5.3 histidine kinase compare
BPHYT_RS19570 +0.7 6.1 sodium/hydrogen exchanger compare
BPHYT_RS24740 +0.7 1.3 RNA polymerase subunit sigma-24 compare
BPHYT_RS17805 +0.7 0.9 hypothetical protein compare
BPHYT_RS28255 +0.7 0.6 hypothetical protein compare
BPHYT_RS23930 +0.7 2.2 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS10410 +0.7 2.1 monooxygenase compare
BPHYT_RS32540 +0.7 1.2 hypothetical protein compare
BPHYT_RS24540 +0.7 1.3 DMSO reductase compare
BPHYT_RS02135 +0.7 1.1 glyoxylate reductase compare
BPHYT_RS26955 +0.7 0.8 succinylglutamate desuccinylase compare
BPHYT_RS30100 +0.7 1.5 copper oxidase compare
BPHYT_RS33535 +0.7 5.7 RNA polymerase sigma factor RpoD compare
BPHYT_RS03015 +0.7 0.6 aldolase compare
BPHYT_RS26975 +0.7 1.0 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS20630 +0.7 1.1 patatin compare
BPHYT_RS35215 +0.7 0.9 dehydrogenase compare
BPHYT_RS22415 +0.7 2.7 nitrite reductase compare
BPHYT_RS04065 +0.7 1.2 hypothetical protein compare
BPHYT_RS05835 +0.7 2.0 hypothetical protein compare
BPHYT_RS11235 +0.7 0.6 hypothetical protein compare
BPHYT_RS26515 +0.7 1.3 HAD family hydrolase compare
BPHYT_RS27865 +0.7 0.8 ATPase compare
BPHYT_RS08545 +0.7 1.1 oxidoreductase compare
BPHYT_RS32150 +0.7 0.9 hypothetical protein compare
BPHYT_RS26010 +0.7 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS08615 +0.7 1.0 hypothetical protein compare
BPHYT_RS36220 +0.7 1.0 hypothetical protein compare
BPHYT_RS29905 +0.7 1.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS33110 +0.7 1.6 chloroperoxidase compare
BPHYT_RS03875 +0.7 1.0 dehydrogenase compare
BPHYT_RS13250 +0.7 1.6 hypothetical protein compare
BPHYT_RS26570 +0.7 0.6 5'-nucleotidase compare
BPHYT_RS27385 +0.7 2.6 DeoR family transcriptional regulator compare
BPHYT_RS15480 +0.7 2.2 hypothetical protein compare
BPHYT_RS16495 +0.7 3.8 glycerol kinase compare
BPHYT_RS05570 +0.7 1.7 hypothetical protein compare
BPHYT_RS30475 +0.7 2.4 pyruvate-binding protein compare
BPHYT_RS26310 +0.7 0.7 ribonuclease R compare
BPHYT_RS04985 +0.7 1.3 hypothetical protein compare
BPHYT_RS24290 +0.7 3.0 hypothetical protein compare
BPHYT_RS09765 +0.7 1.1 G-D-S-L family lipolytic protein compare
BPHYT_RS19885 +0.7 1.5 hypothetical protein compare
BPHYT_RS31825 +0.7 1.3 integrase compare
BPHYT_RS14370 +0.6 1.3 ribonuclease III compare
BPHYT_RS21445 +0.6 1.3 sugar ABC transporter ATP-binding protein compare
BPHYT_RS27455 +0.6 0.9 rod shape-determining protein MreB compare
BPHYT_RS21675 +0.6 2.8 FAD-dependent oxidoreductase compare
BPHYT_RS09780 +0.6 1.5 polysaccharide biosynthesis protein compare
BPHYT_RS12550 +0.6 0.6 GTP-binding protein HflX compare
BPHYT_RS09410 +0.6 2.3 LysR family transcriptional regulator compare
BPHYT_RS06070 +0.6 2.5 cytochrome C compare
BPHYT_RS22190 +0.6 1.3 nucleoid-structuring protein H-NS compare
BPHYT_RS24915 +0.6 2.5 ubiquinol oxidase subunit II compare
BPHYT_RS27490 +0.6 0.9 porin compare
BPHYT_RS16815 +0.6 1.2 ureidoglycolate hydrolase compare
BPHYT_RS23030 +0.6 0.7 gluconate 2-dehydrogenase compare
BPHYT_RS04095 +0.6 0.6 SAM-dependent methyltransferase PhcB compare
BPHYT_RS04625 +0.6 1.7 urea ABC transporter ATP-binding protein compare
BPHYT_RS33785 +0.6 1.6 glycogen debranching protein compare
BPHYT_RS13420 +0.6 2.3 hypothetical protein compare
BPHYT_RS17735 +0.6 1.9 ABC transporter ATP-binding protein compare
BPHYT_RS18975 +0.6 1.5 chemotaxis protein CheD compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in replicable vector efficiency experiments