Experiment set26S512 for Burkholderia phytofirmans PsJN

Compare to:

LB_DAP agar plate, outgrowth in LB_gent

200 most important genes:

  gene name fitness t score description  
BPHYT_RS22940 -5.2 -2.3 pilus assembly protein TadE compare
BPHYT_RS29920 -4.8 -1.2 hypothetical protein compare
BPHYT_RS01625 -4.7 -3.1 chemotaxis protein CheY compare
BPHYT_RS16270 -4.5 -3.1 phosphoglycerate kinase compare
BPHYT_RS11685 -4.5 -1.1 phasin family protein compare
BPHYT_RS09315 -4.3 -1.1 chemotaxis protein CheY compare
BPHYT_RS17890 -4.3 -2.8 shikimate kinase compare
BPHYT_RS01455 -4.1 -1.0 peptide deformylase compare
BPHYT_RS20790 -4.1 -1.4 TetR family transcriptional regulator compare
BPHYT_RS08960 -4.0 -2.4 threonine synthase compare
BPHYT_RS08850 -3.7 -1.8 transcriptional regulator compare
BPHYT_RS02965 -3.7 -3.4 membrane protein compare
BPHYT_RS18590 -3.6 -0.9 hypothetical protein compare
BPHYT_RS09515 -3.6 -4.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS03725 -3.5 -1.5 serine hydroxymethyltransferase compare
BPHYT_RS14185 -3.3 -1.6 transcription elongation factor GreA compare
BPHYT_RS17035 -3.3 -3.9 sugar kinase compare
BPHYT_RS14845 -3.3 -2.3 cysteine synthase compare
BPHYT_RS16675 -3.1 -2.3 dihydroorotase compare
BPHYT_RS14195 -3.1 -2.4 carbamoyl phosphate synthase small subunit compare
BPHYT_RS13610 -2.9 -2.6 MerR family transcriptional regulator compare
BPHYT_RS17165 -2.9 -4.0 cell division protein ZapD compare
BPHYT_RS15075 -2.9 -2.1 dihydrokaempferol 4-reductase compare
BPHYT_RS16710 -2.9 -1.0 LysR family transcriptional regulator compare
BPHYT_RS16255 -2.8 -5.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS28485 -2.8 -1.0 GntR family transcriptional regulator compare
BPHYT_RS22265 -2.8 -1.9 hypothetical protein compare
BPHYT_RS11075 -2.8 -2.9 membrane protein compare
BPHYT_RS18255 -2.8 -2.2 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS11745 -2.8 -1.0 (2Fe-2S)-binding protein compare
BPHYT_RS01620 -2.8 -10.4 sensor histidine kinase compare
BPHYT_RS16835 -2.7 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17640 -2.7 -3.0 2-alkenal reductase compare
BPHYT_RS08235 -2.6 -0.9 nucleoprotein, Hfg, host factor I compare
BPHYT_RS23270 -2.6 -1.2 enoyl-CoA hydratase compare
BPHYT_RS06975 -2.6 -1.8 glutamate racemase compare
BPHYT_RS15710 -2.6 -1.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06410 -2.5 -3.0 transcriptional regulator compare
BPHYT_RS06530 -2.5 -2.5 membrane protein compare
BPHYT_RS14855 -2.5 -2.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS23455 -2.4 -1.0 phosphorylase compare
BPHYT_RS14190 -2.4 -6.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS06710 -2.4 -1.3 hypothetical protein compare
BPHYT_RS28300 -2.4 -1.2 histone nucleoid-structuring protein H-NS compare
BPHYT_RS29035 -2.3 -1.6 arsenic transporter compare
BPHYT_RS11170 -2.3 -1.3 hypothetical protein compare
BPHYT_RS20155 -2.2 -1.3 hypothetical protein compare
BPHYT_RS10995 -2.2 -1.3 GntR family transcriptional regulator compare
BPHYT_RS21495 -2.2 -0.9 ABC transporter compare
BPHYT_RS29620 -2.2 -0.8 hypothetical protein compare
BPHYT_RS29320 -2.1 -1.3 histidine kinase compare
BPHYT_RS11705 -2.1 -1.3 hypothetical protein compare
BPHYT_RS25780 -2.0 -0.9 DeoR faimly transcriptional regulator compare
BPHYT_RS12925 -2.0 -0.9 exodeoxyribonuclease III compare
BPHYT_RS27890 -2.0 -1.1 hypothetical protein compare
BPHYT_RS06610 -2.0 -2.0 triosephosphate isomerase compare
BPHYT_RS14865 -2.0 -4.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS08135 -2.0 -1.2 hypothetical protein compare
BPHYT_RS03400 -2.0 -1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS33920 -2.0 -9.5 type II citrate synthase compare
BPHYT_RS12785 -2.0 -3.0 Rrf2 family transcriptional regulator compare
BPHYT_RS20245 -2.0 -5.0 iron ABC transporter substrate-binding protein compare
BPHYT_RS29945 -1.9 -1.8 histidine kinase compare
BPHYT_RS09115 -1.9 -3.1 RNA polymerase sigma factor RpoS compare
BPHYT_RS10135 -1.9 -0.7 hypothetical protein compare
BPHYT_RS09650 -1.9 -1.7 hypothetical protein compare
BPHYT_RS34655 -1.9 -1.5 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS04285 -1.9 -1.8 rhamnosyltransferase compare
BPHYT_RS28680 -1.9 -1.9 porin compare
BPHYT_RS33060 -1.9 -1.8 hypothetical protein compare
BPHYT_RS31050 -1.9 -0.8 epimerase compare
BPHYT_RS02930 -1.8 -1.7 KpsF/GutQ family protein compare
BPHYT_RS16345 -1.8 -3.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS24315 -1.8 -1.7 phosphoribosyltransferase compare
BPHYT_RS28065 -1.8 -1.4 hypothetical protein compare
BPHYT_RS12990 -1.8 -3.1 iron transporter compare
BPHYT_RS16340 -1.7 -4.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS32360 -1.7 -1.1 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS18660 -1.7 -2.0 hypothetical protein compare
BPHYT_RS34810 -1.7 -2.4 RND transporter compare
BPHYT_RS20235 -1.7 -5.3 iron ABC transporter compare
BPHYT_RS15285 -1.7 -2.5 transcription elongation factor GreB compare
BPHYT_RS04455 -1.7 -1.4 glycosyl transferase compare
BPHYT_RS01425 -1.7 -3.4 3-phosphoglycerate dehydrogenase compare
BPHYT_RS02865 -1.7 -2.3 hypothetical protein compare
BPHYT_RS35955 -1.7 -1.4 hypothetical protein compare
BPHYT_RS17445 -1.6 -4.5 GTP-binding protein YchF compare
BPHYT_RS17100 -1.6 -4.0 RNA pyrophosphohydrolase compare
BPHYT_RS10750 -1.6 -0.9 LysR family transcriptional regulator compare
BPHYT_RS02760 -1.6 -2.3 cytochrome BD oxidase subunit II compare
BPHYT_RS28955 -1.6 -1.6 hypothetical protein compare
BPHYT_RS11535 -1.6 -2.1 membrane protein compare
BPHYT_RS02590 -1.6 -3.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS32525 -1.6 -1.2 hypothetical protein compare
BPHYT_RS07325 -1.6 -0.7 GntR family transcriptional regulator compare
BPHYT_RS18710 -1.6 -1.8 membrane protein compare
BPHYT_RS10720 -1.6 -1.2 hypothetical protein compare
BPHYT_RS09620 -1.5 -1.8 aminodeoxychorismate lyase compare
BPHYT_RS06390 -1.5 -3.0 ribosome-associated protein IOJAP compare
BPHYT_RS22500 -1.5 -1.6 transcriptional regulator compare
BPHYT_RS30145 -1.5 -2.9 aconitate hydratase compare
BPHYT_RS35885 -1.5 -2.0 hypothetical protein compare
BPHYT_RS04370 -1.5 -1.5 glycosyl transferase compare
BPHYT_RS17240 -1.5 -0.9 cell division protein FtsW compare
BPHYT_RS25210 -1.5 -1.0 drug:proton antiporter compare
BPHYT_RS09435 -1.5 -2.7 MarR family transcriptional regulator compare
BPHYT_RS17885 -1.4 -4.3 3-dehydroquinate synthase compare
BPHYT_RS15015 -1.4 -1.1 ArsR family transcriptional regulator compare
BPHYT_RS16245 -1.4 -3.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS15620 -1.4 -4.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17030 -1.4 -1.2 lipid hydroperoxide peroxidase compare
BPHYT_RS04965 -1.4 -4.1 ATP-binding protein compare
BPHYT_RS19435 -1.4 -2.7 16S rRNA methyltransferase compare
BPHYT_RS17525 -1.4 -2.3 glutaredoxin compare
BPHYT_RS06325 -1.4 -3.2 ATPase compare
BPHYT_RS16090 -1.4 -0.9 hypothetical protein compare
BPHYT_RS23570 -1.4 -3.5 chemotaxis protein CheY compare
BPHYT_RS03410 -1.4 -1.6 queuine tRNA-ribosyltransferase compare
BPHYT_RS08565 -1.4 -0.8 dihydroorotate dehydrogenase compare
BPHYT_RS26570 -1.4 -0.8 5'-nucleotidase compare
BPHYT_RS06190 -1.4 -3.1 heptosyltransferase compare
BPHYT_RS35230 -1.3 -1.0 type 11 methyltransferase compare
BPHYT_RS24065 -1.3 -2.7 glucose-methanol-choline oxidoreductase compare
BPHYT_RS17520 -1.3 -4.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS21790 -1.3 -2.1 hypothetical protein compare
BPHYT_RS19335 -1.3 -1.8 hypothetical protein compare
BPHYT_RS36130 -1.3 -1.4 hypothetical protein compare
BPHYT_RS16880 -1.3 -1.3 malic enzyme compare
BPHYT_RS27655 -1.3 -1.1 potassium transporter compare
BPHYT_RS12615 -1.3 -0.8 dihydrodipicolinate synthase compare
BPHYT_RS26185 -1.3 -0.8 thioesterase compare
BPHYT_RS03635 -1.3 -2.9 ABC transporter permease compare
BPHYT_RS16180 -1.3 -0.6 TetR family transcriptional regulator compare
BPHYT_RS09480 -1.3 -0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12840 -1.3 -2.2 pyruvate dehydrogenase compare
BPHYT_RS14390 -1.3 -2.7 peptidase compare
BPHYT_RS09085 -1.3 -2.7 mannosyltransferase compare
BPHYT_RS14505 -1.3 -1.1 membrane protein compare
BPHYT_RS15800 -1.3 -2.7 GntR family transcriptional regulator compare
BPHYT_RS02975 -1.3 -2.1 membrane protein compare
BPHYT_RS02610 -1.3 -2.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS12845 -1.3 -8.0 ATPase compare
BPHYT_RS25270 -1.3 -1.7 multidrug MFS transporter compare
BPHYT_RS06075 -1.3 -6.1 hypothetical protein compare
BPHYT_RS09330 -1.2 -7.9 phytoene synthase compare
BPHYT_RS33135 -1.2 -1.4 LysR family transcriptional regulator compare
BPHYT_RS20905 -1.2 -1.1 hypothetical protein compare
BPHYT_RS28040 -1.2 -2.4 acyl-CoA dehydrogenase compare
BPHYT_RS25065 -1.2 -0.9 glycine/betaine ABC transporter ATPase compare
BPHYT_RS28920 -1.2 -0.9 cellulose synthase compare
BPHYT_RS26525 -1.2 -0.8 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS36525 -1.2 -3.3 hypothetical protein compare
BPHYT_RS02130 -1.2 -1.9 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS06990 -1.2 -1.2 membrane protein compare
BPHYT_RS06175 -1.2 -2.8 LPS biosynthesis compare
BPHYT_RS30140 -1.2 -0.9 3-methylitaconate isomerase compare
BPHYT_RS30230 -1.2 -2.0 LysR family transcriptional regulator compare
BPHYT_RS10850 -1.2 -0.7 LysR family transcriptional regulator compare
BPHYT_RS03640 -1.1 -1.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03170 -1.1 -1.3 membrane protein compare
BPHYT_RS21385 -1.1 -1.3 short-chain dehydrogenase compare
BPHYT_RS23410 -1.1 -1.3 hypothetical protein compare
BPHYT_RS09095 -1.1 -2.5 NADPH:quinone oxidoreductase compare
BPHYT_RS09265 -1.1 -1.6 chemotaxis protein CheY compare
BPHYT_RS05905 -1.1 -1.0 hypothetical protein compare
BPHYT_RS20440 -1.1 -1.0 IclR family transcriptional regulator compare
BPHYT_RS10355 -1.1 -1.5 nitrate reductase compare
BPHYT_RS20065 -1.1 -1.9 hypothetical protein compare
BPHYT_RS08420 -1.1 -1.5 histidine kinase compare
BPHYT_RS30465 -1.1 -0.8 short-chain dehydrogenase compare
BPHYT_RS18340 -1.1 -1.4 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS30995 -1.1 -0.6 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS12725 -1.1 -8.0 regulator compare
BPHYT_RS02880 -1.1 -1.0 ATP-dependent protease compare
BPHYT_RS32310 -1.1 -1.9 porin compare
BPHYT_RS14345 -1.1 -1.9 beta-hexosaminidase compare
BPHYT_RS10670 -1.1 -0.9 catechol 1,2-dioxygenase compare
BPHYT_RS20240 -1.1 -2.3 iron reductase compare
BPHYT_RS12465 -1.1 -1.7 inositol monophosphatase compare
BPHYT_RS34860 -1.1 -1.9 chemotaxis protein compare
BPHYT_RS27030 -1.1 -0.9 transcriptional regulator compare
BPHYT_RS25955 -1.1 -1.3 transcriptional regulator compare
BPHYT_RS23740 -1.1 -3.4 AraC family transcriptional regulator compare
BPHYT_RS06155 -1.1 -2.8 DEAD/DEAH box helicase compare
BPHYT_RS13760 -1.1 -2.6 hypothetical protein compare
BPHYT_RS36435 -1.1 -1.7 hypothetical protein compare
BPHYT_RS33580 -1.1 -3.3 geranyltranstransferase compare
BPHYT_RS26080 -1.1 -0.7 ABC transporter ATPase compare
BPHYT_RS19735 -1.1 -1.9 hypothetical protein compare
BPHYT_RS10645 -1.1 -0.7 cyanate hydratase compare
BPHYT_RS17095 -1.0 -2.7 proline--tRNA ligase compare
BPHYT_RS13430 -1.0 -2.0 radical SAM protein compare
BPHYT_RS11155 -1.0 -0.7 hypothetical protein compare
BPHYT_RS28860 -1.0 -0.6 haloacid dehalogenase compare
BPHYT_RS14380 -1.0 -2.9 elongation factor 4 compare
BPHYT_RS06255 -1.0 -1.5 spore coat protein U compare
BPHYT_RS26030 -1.0 -1.3 cysteine hydrolase compare
BPHYT_RS02415 -1.0 -2.8 cytochrome C550 compare
BPHYT_RS08020 -1.0 -2.2 hypothetical protein compare
BPHYT_RS20695 -1.0 -1.4 ribokinase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in lb_dap plate control and outgrow on gent experiments