Experiment set26S256 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glycocyamine 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS02275 -3.1 -8.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS26535 -2.6 -7.9 thiamine phosphate synthase compare
PFLU_RS31530 -2.5 -2.3 transposase compare
PFLU_RS23590 -2.5 -3.3 gluconokinase compare
PFLU_RS28645 -2.4 -11.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS03970 -2.4 -5.6 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS26530 -2.4 -13.7 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS28420 -2.3 -8.1 thiazole synthase compare
PFLU_RS01895 -2.2 -2.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS07255 -2.1 -3.4 sulfurtransferase TusA family protein compare
PFLU_RS02590 -2.1 -1.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS29065 -2.1 -1.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS03665 -2.1 -4.3 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS24025 -2.1 -5.1 quinolinate synthase NadA compare
PFLU_RS20285 -2.1 -3.6 MerR family transcriptional regulator compare
PFLU_RS27650 -2.0 -12.0 biotin synthase BioB compare
PFLU_RS00275 -1.9 -4.7 carbonic anhydrase compare
PFLU_RS02430 -1.7 -11.6 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS06055 -1.7 -1.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS29515 -1.7 -6.6 RidA family protein compare
PFLU_RS04150 -1.6 -1.6 DUF1043 family protein compare
PFLU_RS23065 -1.6 -3.1 phosphate acyltransferase PlsX compare
PFLU_RS30160 -1.6 -1.1 ParB/RepB/Spo0J family partition protein compare
PFLU_RS28390 -1.6 -1.1 methionine biosynthesis protein MetW compare
PFLU_RS04465 -1.6 -2.1 ATP phosphoribosyltransferase compare
PFLU_RS04470 -1.6 -1.1 histidinol dehydrogenase compare
PFLU_RS25360 -1.6 -2.5 glutamate 5-kinase compare
PFLU_RS20510 -1.6 -1.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS12260 -1.5 -1.8 hypothetical protein compare
PFLU_RS18530 -1.5 -1.5 DNA translocase FtsK compare
PFLU_RS28385 -1.5 -1.8 homoserine O-acetyltransferase compare
PFLU_RS07225 -1.5 -9.7 L-aspartate oxidase compare
PFLU_RS29480 -1.5 -1.8 exodeoxyribonuclease III compare
PFLU_RS20575 -1.5 -1.4 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01485 -1.5 -9.8 cellulase compare
PFLU_RS22095 -1.5 -6.6 GTP diphosphokinase compare
PFLU_RS22070 -1.5 -1.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS27365 -1.4 -1.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS23390 -1.4 -2.5 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS23305 -1.4 -5.8 arginine N-succinyltransferase compare
PFLU_RS00180 -1.4 -1.0 tryptophan synthase subunit beta compare
PFLU_RS29735 -1.4 -2.1 HlyC/CorC family transporter compare
PFLU_RS20580 -1.4 -2.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS08125 -1.4 -1.3 integration host factor subunit beta compare
PFLU_RS29880 -1.4 -8.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS18395 -1.4 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS23070 -1.4 -0.9 50S ribosomal protein L32 compare
PFLU_RS01285 -1.4 -0.9 HAMP domain-containing protein compare
PFLU_RS07230 -1.4 -4.4 RNA polymerase sigma factor RpoE compare
PFLU_RS24765 -1.3 -5.2 2-isopropylmalate synthase compare
PFLU_RS28165 -1.3 -1.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS24330 -1.3 -1.5 phosphogluconate dehydratase compare
PFLU_RS28535 -1.3 -2.0 dihydroxy-acid dehydratase compare
PFLU_RS06320 -1.3 -3.0 OmpH family outer membrane protein compare
PFLU_RS02490 -1.3 -2.4 phosphoserine phosphatase SerB compare
PFLU_RS26565 -1.3 -1.7 rRNA maturation RNase YbeY compare
PFLU_RS28695 -1.3 -1.4 phosphoglycerate dehydrogenase compare
PFLU_RS21995 -1.3 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS18420 -1.2 -2.4 hypothetical protein compare
PFLU_RS04660 -1.2 -4.9 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS13485 -1.2 -6.2 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS07245 -1.2 -2.6 DegQ family serine endoprotease compare
PFLU_RS06310 -1.2 -2.7 sigma E protease regulator RseP compare
PFLU_RS04445 -1.2 -3.7 ABC transporter substrate-binding protein compare
PFLU_RS28655 -1.2 -3.6 HAD family hydrolase compare
PFLU_RS27465 -1.2 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS29885 -1.2 -6.6 LysR family transcriptional regulator compare
PFLU_RS30165 -1.2 -4.4 ParA family protein compare
PFLU_RS01645 -1.2 -3.3 S41 family peptidase compare
PFLU_RS18885 -1.2 -2.4 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS08650 -1.1 -1.0 heme exporter protein CcmB compare
PFLU_RS30345 -1.1 -1.9 DUF2559 family protein compare
PFLU_RS03250 -1.1 -1.9 heavy-metal-associated domain-containing protein compare
PFLU_RS21740 -1.1 -4.5 Hpt domain-containing protein compare
PFLU_RS23585 -1.1 -4.7 GntP family permease compare
PFLU_RS27640 -1.1 -1.5 alpha/beta fold hydrolase compare
PFLU_RS04435 -1.1 -3.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS20660 -1.1 -6.9 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS29875 -1.1 -7.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS05890 -1.1 -1.0 recombination regulator RecX compare
PFLU_RS23725 -1.1 -4.6 glucose-6-phosphate dehydrogenase compare
PFLU_RS29780 -1.1 -2.3 acyl-CoA thioesterase compare
PFLU_RS19015 -1.1 -4.9 anti-sigma factor compare
PFLU_RS22600 -1.1 -1.6 RNA polymerase sigma factor SigX compare
PFLU_RS29360 -1.0 -1.4 cytochrome c5 family protein compare
PFLU_RS24160 -1.0 -3.2 HAMP domain-containing protein compare
PFLU_RS07665 -1.0 -0.9 type I DNA topoisomerase compare
PFLU_RS29275 -1.0 -5.0 DUF484 family protein compare
PFLU_RS27635 -1.0 -5.4 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS04440 -1.0 -4.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS08665 -1.0 -1.7 cytochrome c maturation protein CcmE compare
PFLU_RS02205 -1.0 -5.4 potassium/proton antiporter compare
PFLU_RS31290 -1.0 -1.6 EamA family transporter compare
PFLU_RS31635 -1.0 -1.9 IS21 family transposase compare
PFLU_RS30170 -1.0 -2.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
PFLU_RS26835 -1.0 -2.5 exodeoxyribonuclease VII small subunit compare
PFLU_RS28195 -1.0 -7.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS27630 -1.0 -3.7 dethiobiotin synthase compare
PFLU_RS04430 -0.9 -3.6 ATP-binding cassette domain-containing protein compare
PFLU_RS13010 -0.9 -2.3 Fe-S biogenesis protein NfuA compare
PFLU_RS09495 -0.9 -2.4 helix-turn-helix transcriptional regulator compare
PFLU_RS20290 -0.9 -0.9 integration host factor subunit alpha compare
PFLU_RS21575 -0.9 -2.0 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS15205 -0.9 -2.4 ribose ABC transporter permease compare
PFLU_RS24860 -0.9 -1.7 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS05780 -0.9 -5.8 helix-turn-helix transcriptional regulator compare
PFLU_RS24170 -0.9 -5.0 Nudix family hydrolase compare
PFLU_RS04455 -0.9 -2.4 BolA family transcriptional regulator compare
PFLU_RS02050 -0.9 -5.7 NAD(P)-binding protein compare
PFLU_RS17060 -0.9 -1.4 monooxygenase compare
PFLU_RS14300 -0.9 -1.3 response regulator transcription factor compare
PFLU_RS13580 -0.9 -2.9 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS20715 -0.9 -1.9 iron ABC transporter permease compare
PFLU_RS26595 -0.9 -0.6 lipoprotein compare
PFLU_RS27645 -0.9 -6.1 8-amino-7-oxononanoate synthase compare
PFLU_RS07785 -0.9 -4.5 VacJ family lipoprotein compare
PFLU_RS13895 -0.8 -1.4 helix-turn-helix transcriptional regulator compare
PFLU_RS14970 -0.8 -2.9 alpha/beta hydrolase compare
PFLU_RS21915 -0.8 -3.6 MarR family transcriptional regulator compare
PFLU_RS24255 -0.8 -4.2 pyruvate kinase compare
PFLU_RS13665 -0.8 -1.2 MarR family transcriptional regulator compare
PFLU_RS31780 -0.8 -2.2 hypothetical protein compare
PFLU_RS02970 -0.8 -3.0 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS24805 -0.8 -3.0 helix-turn-helix domain-containing protein compare
PFLU_RS22520 -0.8 -1.4 GntR family transcriptional regulator compare
PFLU_RS01660 -0.8 -0.9 rhodanese-like domain-containing protein compare
PFLU_RS04505 -0.8 -2.8 hypothetical protein compare
PFLU_RS22015 -0.8 -4.6 cobalamin biosynthesis protein compare
PFLU_RS07780 -0.8 -2.5 hypothetical protein compare
PFLU_RS14320 -0.8 -1.9 DUF2946 domain-containing protein compare
PFLU_RS22000 -0.8 -3.4 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS01095 -0.8 -2.0 ribbon-helix-helix protein, CopG family compare
PFLU_RS03570 -0.8 -2.0 hypothetical protein compare
PFLU_RS20330 -0.8 -1.6 cold-shock protein compare
PFLU_RS09670 -0.8 -1.8 integrating conjugative element protein compare
PFLU_RS02215 -0.8 -1.4 hypothetical protein compare
PFLU_RS03100 -0.8 -1.6 hypothetical protein compare
PFLU_RS23185 -0.8 -5.8 protein-glutamate O-methyltransferase CheR compare
PFLU_RS01005 -0.8 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS02280 -0.8 -5.2 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS10835 -0.8 -2.0 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS12450 -0.7 -4.9 cyclic peptide export ABC transporter compare
PFLU_RS28270 -0.7 -1.6 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS25115 -0.7 -2.6 cytochrome c family protein compare
PFLU_RS19275 -0.7 -2.4 copper homeostasis membrane protein CopD compare
PFLU_RS24560 -0.7 -3.9 site-specific tyrosine recombinase XerD compare
PFLU_RS31185 -0.7 -2.9 hypothetical protein compare
PFLU_RS04945 -0.7 -1.7 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS17195 -0.7 -2.3 acyl dehydratase compare
PFLU_RS03995 -0.7 -1.1 hypothetical protein compare
PFLU_RS24590 -0.7 -1.9 cytochrome c assembly protein compare
PFLU_RS01955 -0.7 -3.4 DUF971 domain-containing protein compare
PFLU_RS01875 -0.7 -0.7 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS07695 -0.7 -1.9 beta-N-acetylhexosaminidase compare
PFLU_RS11885 -0.7 -1.2 type II secretion system protein M compare
PFLU_RS20520 -0.7 -4.4 colicin V production protein CvpA compare
PFLU_RS18705 -0.7 -1.6 hypothetical protein compare
PFLU_RS20540 -0.7 -0.5 phosphoribosylanthranilate isomerase compare
PFLU_RS02045 -0.7 -5.6 glutamate synthase large subunit compare
PFLU_RS23235 -0.7 -1.6 Arc family DNA-binding protein compare
PFLU_RS25955 -0.7 -1.6 hypothetical protein compare
PFLU_RS03645 -0.7 -2.0 tetratricopeptide repeat protein compare
PFLU_RS26290 -0.7 -0.6 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS21655 -0.7 -3.6 response regulator compare
PFLU_RS06235 -0.7 -2.4 SufE family protein compare
PFLU_RS21645 -0.7 -4.5 chemotaxis protein CheA compare
PFLU_RS02990 -0.7 -2.1 precorrin-3B C(17)-methyltransferase compare
PFLU_RS31650 -0.7 -1.9 hypothetical protein compare
PFLU_RS25740 -0.6 -1.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS12915 -0.6 -1.3 methyltransferase domain-containing protein compare
PFLU_RS17750 -0.6 -1.4 pirin family protein compare
PFLU_RS02365 -0.6 -3.8 glycosyltransferase compare
PFLU_RS26570 -0.6 -2.1 HlyC/CorC family transporter compare
PFLU_RS15950 -0.6 -1.8 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
PFLU_RS22025 -0.6 -4.4 cobyrinate a,c-diamide synthase compare
PFLU_RS31490 -0.6 -0.9 hypothetical protein compare
PFLU_RS11060 -0.6 -2.3 DUF3592 domain-containing protein compare
PFLU_RS14820 -0.6 -2.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS19855 -0.6 -1.7 DUF4398 domain-containing protein compare
PFLU_RS24130 -0.6 -1.8 protein SlyX compare
PFLU_RS27370 -0.6 -0.4 anthranilate phosphoribosyltransferase compare
PFLU_RS28110 -0.6 -2.4 hypothetical protein compare
PFLU_RS25790 -0.6 -2.6 polyribonucleotide nucleotidyltransferase compare
PFLU_RS00070 -0.6 -1.6 tetratricopeptide repeat protein compare
PFLU_RS29280 -0.6 -3.0 tyrosine recombinase XerC compare
PFLU_RS17390 -0.6 -1.7 DUF4880 domain-containing protein compare
PFLU_RS05880 -0.6 -2.8 CinA family protein compare
PFLU_RS00695 -0.6 -1.0 DUF2789 domain-containing protein compare
PFLU_RS24335 -0.6 -4.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS25640 -0.6 -0.8 ketol-acid reductoisomerase compare
PFLU_RS01605 -0.6 -0.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS05600 -0.6 -4.1 GNAT family N-acetyltransferase compare
PFLU_RS00850 -0.6 -1.5 hypothetical protein compare
PFLU_RS05410 -0.6 -2.7 PadR family transcriptional regulator compare
PFLU_RS25335 -0.6 -3.5 sulfate transporter CysZ compare
PFLU_RS28965 -0.6 -2.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS06205 -0.6 -1.9 cold-shock protein compare
PFLU_RS14005 -0.6 -1.5 hypothetical protein compare
PFLU_RS15745 -0.6 -1.7 type II secretion system ATPase GspE compare
PFLU_RS15410 -0.6 -1.5 zinc-dependent alcohol dehydrogenase family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source Glycocyamine across organisms