Experiment set26S255 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Carnitine hydrochloride 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27935 -4.1 -4.8 3-keto-5-aminohexanoate cleavage protein conserved
PFLU_RS03240 -3.7 -10.7 copper-translocating P-type ATPase compare
PFLU_RS28645 -3.6 -7.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS07765 -3.3 -5.9 cupredoxin family protein compare
PFLU_RS27880 -3.2 -9.1 dimethylglycine demethylation protein DgcB compare
PFLU_RS27945 -3.2 -9.7 4-hydroxybenzoyl-CoA thioesterase conserved
PFLU_RS27940 -3.1 -11.8 L-carnitine dehydrogenase conserved
PFLU_RS27870 -3.1 -14.9 electron transfer flavoprotein subunit beta compare
PFLU_RS27875 -3.0 -11.2 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS27895 -3.0 -11.7 membrane dipeptidase compare
PFLU_RS27860 -2.9 -8.9 glycine-betaine demethylase subunit GbcB compare
PFLU_RS27925 -2.8 -7.3 GlxA family transcriptional regulator compare
PFLU_RS03970 -2.6 -5.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27885 -2.6 -13.0 dimethylglycine demethylation protein DgcA compare
PFLU_RS27865 -2.5 -12.4 glycine-betaine demethylase subunit GbcA compare
PFLU_RS27805 -2.5 -3.5 sarcosine oxidase subunit gamma family protein compare
PFLU_RS19015 -2.4 -7.7 anti-sigma factor compare
PFLU_RS27820 -2.3 -11.6 sarcosine oxidase subunit beta compare
PFLU_RS00275 -2.3 -4.3 carbonic anhydrase compare
PFLU_RS27810 -2.2 -14.8 sarcosine oxidase subunit alpha compare
PFLU_RS27890 -2.2 -10.2 hypothetical protein compare
PFLU_RS02590 -2.1 -1.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20285 -2.1 -3.6 MerR family transcriptional regulator compare
PFLU_RS27975 -2.1 -5.5 choline ABC transporter ATP-binding protein compare
PFLU_RS24025 -2.1 -5.2 quinolinate synthase NadA compare
PFLU_RS26250 -2.0 -8.6 ferredoxin--NADP reductase compare
PFLU_RS13010 -2.0 -3.1 Fe-S biogenesis protein NfuA compare
PFLU_RS29095 -2.0 -17.6 polyphosphate kinase 1 compare
PFLU_RS27930 -1.9 -8.3 choline ABC transporter substrate-binding protein conserved
PFLU_RS07225 -1.9 -11.3 L-aspartate oxidase compare
PFLU_RS15410 -1.9 -3.9 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS10575 -1.9 -9.8 acetyl-CoA C-acetyltransferase compare
PFLU_RS18395 -1.8 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS02205 -1.8 -8.1 potassium/proton antiporter compare
PFLU_RS27965 -1.8 -10.8 choline ABC transporter substrate-binding protein compare
PFLU_RS01895 -1.8 -3.4 phosphoribosyl-ATP diphosphatase compare
PFLU_RS07255 -1.8 -3.5 sulfurtransferase TusA family protein compare
PFLU_RS27955 -1.7 -8.5 GlxA family transcriptional regulator compare
PFLU_RS02050 -1.7 -9.1 NAD(P)-binding protein compare
PFLU_RS27825 -1.7 -10.4 serine hydroxymethyltransferase compare
PFLU_RS25360 -1.7 -2.0 glutamate 5-kinase compare
PFLU_RS27815 -1.7 -6.2 sarcosine oxidase subunit delta compare
PFLU_RS04150 -1.7 -1.2 DUF1043 family protein compare
PFLU_RS29515 -1.7 -6.8 RidA family protein compare
PFLU_RS08735 -1.7 -1.9 histidine phosphatase family protein compare
PFLU_RS04465 -1.6 -1.6 ATP phosphoribosyltransferase compare
PFLU_RS08660 -1.6 -1.1 heme exporter protein CcmD compare
PFLU_RS20575 -1.6 -1.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS18530 -1.6 -1.5 DNA translocase FtsK compare
PFLU_RS20510 -1.6 -1.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS27970 -1.6 -7.7 choline ABC transporter permease subunit compare
PFLU_RS23305 -1.6 -6.2 arginine N-succinyltransferase compare
PFLU_RS03235 -1.6 -5.8 Cu(I)-responsive transcriptional regulator compare
PFLU_RS04470 -1.6 -1.5 histidinol dehydrogenase compare
PFLU_RS28390 -1.5 -1.5 methionine biosynthesis protein MetW compare
PFLU_RS04660 -1.5 -5.2 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS29480 -1.5 -1.0 exodeoxyribonuclease III compare
PFLU_RS28385 -1.5 -1.0 homoserine O-acetyltransferase compare
PFLU_RS08665 -1.5 -1.0 cytochrome c maturation protein CcmE compare
PFLU_RS19170 -1.5 -1.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS24590 -1.5 -2.5 cytochrome c assembly protein compare
PFLU_RS22095 -1.5 -6.7 GTP diphosphokinase compare
PFLU_RS03665 -1.5 -4.1 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS13485 -1.5 -6.8 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS27365 -1.5 -1.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20580 -1.4 -1.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS23065 -1.4 -3.7 phosphate acyltransferase PlsX compare
PFLU_RS00180 -1.4 -1.0 tryptophan synthase subunit beta compare
PFLU_RS07665 -1.4 -1.0 type I DNA topoisomerase compare
PFLU_RS06055 -1.4 -1.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS29735 -1.4 -1.7 HlyC/CorC family transporter compare
PFLU_RS21740 -1.4 -5.5 Hpt domain-containing protein compare
PFLU_RS17950 -1.4 -1.8 hypothetical protein compare
PFLU_RS24765 -1.4 -5.0 2-isopropylmalate synthase compare
PFLU_RS17060 -1.4 -1.9 monooxygenase compare
PFLU_RS08650 -1.4 -0.9 heme exporter protein CcmB compare
PFLU_RS01285 -1.4 -0.9 HAMP domain-containing protein compare
PFLU_RS23070 -1.4 -0.9 50S ribosomal protein L32 compare
PFLU_RS04455 -1.4 -3.0 BolA family transcriptional regulator compare
PFLU_RS28655 -1.4 -2.3 HAD family hydrolase compare
PFLU_RS08670 -1.4 -0.9 heme lyase CcmF/NrfE family subunit compare
PFLU_RS02980 -1.4 -1.7 precorrin-8X methylmutase compare
PFLU_RS01645 -1.4 -2.9 S41 family peptidase compare
PFLU_RS26530 -1.3 -8.9 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS06310 -1.3 -2.9 sigma E protease regulator RseP compare
PFLU_RS20290 -1.3 -1.2 integration host factor subunit alpha compare
PFLU_RS07245 -1.3 -2.5 DegQ family serine endoprotease compare
PFLU_RS28695 -1.3 -1.2 phosphoglycerate dehydrogenase compare
PFLU_RS02280 -1.3 -8.1 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS28165 -1.3 -0.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS23920 -1.3 -1.1 septation protein A compare
PFLU_RS27650 -1.3 -8.9 biotin synthase BioB compare
PFLU_RS00310 -1.3 -1.6 twin transmembrane helix small protein compare
PFLU_RS27475 -1.3 -2.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS13950 -1.3 -2.2 hypothetical protein compare
PFLU_RS04440 -1.3 -5.4 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS03645 -1.3 -3.4 tetratricopeptide repeat protein compare
PFLU_RS10585 -1.3 -4.4 CoA transferase subunit A compare
PFLU_RS02045 -1.3 -9.9 glutamate synthase large subunit compare
PFLU_RS08655 -1.3 -0.8 heme ABC transporter permease compare
PFLU_RS22520 -1.3 -1.7 GntR family transcriptional regulator compare
PFLU_RS21360 -1.3 -2.3 MarR family transcriptional regulator compare
PFLU_RS28535 -1.2 -1.9 dihydroxy-acid dehydratase compare
PFLU_RS05655 -1.2 -3.0 DeoR/GlpR family transcriptional regulator compare
PFLU_RS10580 -1.2 -7.1 CoA transferase subunit B conserved
PFLU_RS07230 -1.2 -4.5 RNA polymerase sigma factor RpoE compare
PFLU_RS24160 -1.2 -3.3 HAMP domain-containing protein compare
PFLU_RS08675 -1.2 -0.8 DsbE family thiol:disulfide interchange protein compare
PFLU_RS00695 -1.2 -1.8 DUF2789 domain-containing protein compare
PFLU_RS01585 -1.2 -4.6 oxidative damage protection protein compare
PFLU_RS28420 -1.2 -5.2 thiazole synthase compare
PFLU_RS28325 -1.1 -4.9 energy transducer TonB compare
PFLU_RS02275 -1.1 -5.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS18615 -1.1 -1.2 NADH-quinone oxidoreductase subunit A compare
PFLU_RS27465 -1.1 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS30165 -1.1 -4.3 ParA family protein compare
PFLU_RS24015 -1.1 -1.9 cold-shock protein compare
PFLU_RS01660 -1.1 -1.0 rhodanese-like domain-containing protein compare
PFLU_RS22835 -1.1 -4.9 amidotransferase compare
PFLU_RS29780 -1.1 -2.3 acyl-CoA thioesterase compare
PFLU_RS07645 -1.1 -2.7 hypothetical protein compare
PFLU_RS20660 -1.1 -6.5 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS14440 -1.1 -1.3 hypothetical protein compare
PFLU_RS25790 -1.1 -4.2 polyribonucleotide nucleotidyltransferase compare
PFLU_RS07785 -1.1 -5.2 VacJ family lipoprotein compare
PFLU_RS05630 -1.1 -1.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS05880 -1.1 -4.4 CinA family protein compare
PFLU_RS04430 -1.0 -3.8 ATP-binding cassette domain-containing protein compare
PFLU_RS13045 -1.0 -3.6 AAA domain-containing protein compare
PFLU_RS30345 -1.0 -1.8 DUF2559 family protein compare
PFLU_RS02970 -1.0 -3.5 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS18350 -1.0 -2.5 GIY-YIG nuclease family protein compare
PFLU_RS08620 -1.0 -3.7 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS26565 -1.0 -1.2 rRNA maturation RNase YbeY compare
PFLU_RS01690 -1.0 -5.2 nitrogen regulation protein NR(II) compare
PFLU_RS06320 -1.0 -2.6 OmpH family outer membrane protein compare
PFLU_RS31650 -1.0 -1.9 hypothetical protein compare
PFLU_RS08875 -1.0 -2.7 heme-binding protein compare
PFLU_RS21995 -1.0 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS22075 -1.0 -6.7 DUF3108 domain-containing protein compare
PFLU_RS02860 -1.0 -2.2 urease subunit beta compare
PFLU_RS02430 -1.0 -7.3 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS18735 -1.0 -1.4 hypothetical protein compare
PFLU_RS01685 -1.0 -3.4 nitrogen regulation protein NR(I) compare
PFLU_RS26535 -0.9 -4.3 thiamine phosphate synthase compare
PFLU_RS31530 -0.9 -1.3 transposase compare
PFLU_RS12395 -0.9 -2.4 zinc ribbon domain-containing protein compare
PFLU_RS29885 -0.9 -5.5 LysR family transcriptional regulator compare
PFLU_RS24695 -0.9 -1.7 PTS glucose transporter subunit IIB compare
PFLU_RS00040 -0.9 -6.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS00065 -0.9 -3.8 lysophospholipid acyltransferase compare
PFLU_RS23220 -0.9 -1.5 tRNA-Arg compare
PFLU_RS02310 -0.9 -3.2 LPS kinase compare
PFLU_RS11475 -0.9 -1.3 histidine kinase compare
PFLU_RS13350 -0.9 -1.6 ParD-like family protein compare
PFLU_RS23235 -0.9 -1.9 Arc family DNA-binding protein compare
PFLU_RS10835 -0.9 -2.3 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS29905 -0.9 -2.6 Tim44 domain-containing protein compare
PFLU_RS27640 -0.9 -1.7 alpha/beta fold hydrolase compare
PFLU_RS09305 -0.9 -6.9 hypothetical protein compare
PFLU_RS21575 -0.9 -1.8 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS13015 -0.9 -3.0 precorrin-4 C(11)-methyltransferase compare
PFLU_RS28965 -0.9 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS16580 -0.9 -2.2 hypothetical protein compare
PFLU_RS15005 -0.9 -1.6 hypothetical protein compare
PFLU_RS04445 -0.9 -3.1 ABC transporter substrate-binding protein compare
PFLU_RS05210 -0.8 -1.9 HU family DNA-binding protein compare
PFLU_RS25815 -0.8 -1.3 transcription termination/antitermination protein NusA compare
PFLU_RS21395 -0.8 -3.9 allantoicase compare
PFLU_RS26595 -0.8 -0.5 lipoprotein compare
PFLU_RS18940 -0.8 -4.6 acyl-CoA dehydrogenase compare
PFLU_RS04220 -0.8 -3.5 FadR family transcriptional regulator compare
PFLU_RS04945 -0.8 -1.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS14305 -0.8 -2.0 sensor histidine kinase compare
PFLU_RS15205 -0.8 -1.9 ribose ABC transporter permease compare
PFLU_RS07755 -0.8 -4.6 heavy metal sensor histidine kinase compare
PFLU_RS01890 -0.8 -3.1 twin-arginine translocase TatA/TatE family subunit compare
PFLU_RS29560 -0.8 -0.8 hypothetical protein compare
PFLU_RS25335 -0.8 -4.4 sulfate transporter CysZ compare
PFLU_RS06170 -0.8 -3.1 ribosomal RNA small subunit methyltransferase J compare
PFLU_RS21425 -0.8 -1.7 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS30170 -0.8 -2.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
PFLU_RS20690 -0.7 -2.4 hypothetical protein compare
PFLU_RS02690 -0.7 -1.5 hypothetical protein compare
PFLU_RS11105 -0.7 -2.9 hypothetical protein compare
PFLU_RS03395 -0.7 -2.4 ribosomal-protein-alanine N-acetyltransferase compare
PFLU_RS09480 -0.7 -1.3 hypothetical protein compare
PFLU_RS10765 -0.7 -3.8 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS12580 -0.7 -4.1 MurR/RpiR family transcriptional regulator compare
PFLU_RS29255 -0.7 -1.6 iron donor protein CyaY compare
PFLU_RS15065 -0.7 -2.2 IclR family transcriptional regulator compare
PFLU_RS27375 -0.7 -3.1 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS11820 -0.7 -3.6 hypothetical protein compare
PFLU_RS02150 -0.7 -2.4 acyl carrier protein compare
PFLU_RS01955 -0.7 -3.6 DUF971 domain-containing protein compare
PFLU_RS25210 -0.7 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS12450 -0.7 -4.8 cyclic peptide export ABC transporter compare
PFLU_RS28120 -0.7 -2.2 DUF1090 domain-containing protein compare
PFLU_RS12730 -0.7 -3.4 hypothetical protein compare
PFLU_RS18820 -0.7 -2.0 acyl-CoA dehydrogenase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Carnitine hydrochloride in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Carnitine hydrochloride across organisms