Experiment set26S254 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Carnitine hydrochloride 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS28645 -3.8 -8.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS27940 -3.7 -12.0 L-carnitine dehydrogenase conserved
PFLU_RS03240 -3.6 -12.3 copper-translocating P-type ATPase compare
PFLU_RS27875 -3.3 -11.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS27945 -3.3 -9.6 4-hydroxybenzoyl-CoA thioesterase conserved
PFLU_RS27880 -3.3 -8.7 dimethylglycine demethylation protein DgcB compare
PFLU_RS27870 -3.1 -15.4 electron transfer flavoprotein subunit beta compare
PFLU_RS07765 -3.1 -5.9 cupredoxin family protein compare
PFLU_RS27885 -3.0 -14.0 dimethylglycine demethylation protein DgcA compare
PFLU_RS19015 -2.8 -8.5 anti-sigma factor compare
PFLU_RS27895 -2.8 -12.7 membrane dipeptidase compare
PFLU_RS27860 -2.7 -9.3 glycine-betaine demethylase subunit GbcB compare
PFLU_RS27890 -2.7 -11.4 hypothetical protein compare
PFLU_RS27975 -2.7 -5.2 choline ABC transporter ATP-binding protein compare
PFLU_RS27935 -2.6 -6.1 3-keto-5-aminohexanoate cleavage protein conserved
PFLU_RS03970 -2.5 -6.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS06055 -2.4 -3.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS27865 -2.4 -12.5 glycine-betaine demethylase subunit GbcA compare
PFLU_RS02205 -2.4 -10.0 potassium/proton antiporter compare
PFLU_RS27970 -2.4 -9.9 choline ABC transporter permease subunit compare
PFLU_RS27820 -2.3 -12.1 sarcosine oxidase subunit beta compare
PFLU_RS03235 -2.3 -6.9 Cu(I)-responsive transcriptional regulator compare
PFLU_RS02590 -2.2 -1.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS00275 -2.1 -5.0 carbonic anhydrase compare
PFLU_RS17265 -2.1 -3.3 hypothetical protein compare
PFLU_RS27925 -2.1 -7.1 GlxA family transcriptional regulator compare
PFLU_RS18395 -2.1 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS27930 -2.1 -9.0 choline ABC transporter substrate-binding protein conserved
PFLU_RS27955 -2.0 -9.3 GlxA family transcriptional regulator compare
PFLU_RS27810 -2.0 -14.1 sarcosine oxidase subunit alpha compare
PFLU_RS24025 -2.0 -5.7 quinolinate synthase NadA compare
PFLU_RS13010 -2.0 -3.4 Fe-S biogenesis protein NfuA compare
PFLU_RS29095 -2.0 -17.9 polyphosphate kinase 1 compare
PFLU_RS26250 -1.9 -8.9 ferredoxin--NADP reductase compare
PFLU_RS20285 -1.9 -4.1 MerR family transcriptional regulator compare
PFLU_RS03665 -1.8 -4.5 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS13485 -1.8 -8.2 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS10575 -1.8 -9.9 acetyl-CoA C-acetyltransferase compare
PFLU_RS29515 -1.8 -7.1 RidA family protein compare
PFLU_RS27825 -1.7 -10.4 serine hydroxymethyltransferase compare
PFLU_RS07225 -1.7 -10.8 L-aspartate oxidase compare
PFLU_RS25360 -1.7 -2.5 glutamate 5-kinase compare
PFLU_RS04150 -1.7 -1.6 DUF1043 family protein compare
PFLU_RS30345 -1.7 -2.6 DUF2559 family protein compare
PFLU_RS08660 -1.7 -1.1 heme exporter protein CcmD compare
PFLU_RS04465 -1.7 -2.0 ATP phosphoribosyltransferase compare
PFLU_RS22095 -1.7 -6.2 GTP diphosphokinase compare
PFLU_RS20575 -1.7 -1.1 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27965 -1.7 -10.3 choline ABC transporter substrate-binding protein compare
PFLU_RS23305 -1.7 -6.5 arginine N-succinyltransferase compare
PFLU_RS28390 -1.6 -1.1 methionine biosynthesis protein MetW compare
PFLU_RS27815 -1.6 -6.7 sarcosine oxidase subunit delta compare
PFLU_RS04470 -1.6 -1.6 histidinol dehydrogenase compare
PFLU_RS28385 -1.6 -1.1 homoserine O-acetyltransferase compare
PFLU_RS17060 -1.6 -2.8 monooxygenase compare
PFLU_RS20510 -1.6 -2.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS29480 -1.6 -1.1 exodeoxyribonuclease III compare
PFLU_RS08665 -1.6 -1.1 cytochrome c maturation protein CcmE compare
PFLU_RS23220 -1.6 -1.7 tRNA-Arg compare
PFLU_RS02275 -1.6 -6.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS23065 -1.5 -3.7 phosphate acyltransferase PlsX compare
PFLU_RS18530 -1.5 -1.8 DNA translocase FtsK compare
PFLU_RS29735 -1.5 -1.1 HlyC/CorC family transporter compare
PFLU_RS04660 -1.5 -5.7 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS20580 -1.5 -1.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27365 -1.5 -1.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01895 -1.5 -3.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28655 -1.5 -1.8 HAD family hydrolase compare
PFLU_RS04315 -1.5 -1.0 rod shape-determining protein MreD compare
PFLU_RS02050 -1.5 -8.5 NAD(P)-binding protein compare
PFLU_RS24765 -1.5 -5.0 2-isopropylmalate synthase compare
PFLU_RS07665 -1.5 -1.0 type I DNA topoisomerase compare
PFLU_RS27640 -1.5 -2.0 alpha/beta fold hydrolase compare
PFLU_RS08650 -1.5 -0.9 heme exporter protein CcmB compare
PFLU_RS08670 -1.4 -1.0 heme lyase CcmF/NrfE family subunit compare
PFLU_RS00180 -1.4 -1.4 tryptophan synthase subunit beta compare
PFLU_RS19170 -1.4 -1.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS01585 -1.4 -5.7 oxidative damage protection protein compare
PFLU_RS23070 -1.4 -0.9 50S ribosomal protein L32 compare
PFLU_RS07255 -1.4 -3.1 sulfurtransferase TusA family protein compare
PFLU_RS28165 -1.4 -0.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS30170 -1.4 -3.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
PFLU_RS28535 -1.4 -1.6 dihydroxy-acid dehydratase compare
PFLU_RS27475 -1.3 -3.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS26565 -1.3 -1.7 rRNA maturation RNase YbeY compare
PFLU_RS01645 -1.3 -3.5 S41 family peptidase compare
PFLU_RS28325 -1.3 -5.7 energy transducer TonB compare
PFLU_RS27805 -1.3 -2.6 sarcosine oxidase subunit gamma family protein compare
PFLU_RS02280 -1.3 -8.3 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS15410 -1.3 -3.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS26485 -1.3 -3.9 hypothetical protein compare
PFLU_RS04455 -1.3 -2.9 BolA family transcriptional regulator compare
PFLU_RS10585 -1.3 -5.2 CoA transferase subunit A compare
PFLU_RS23920 -1.3 -1.1 septation protein A compare
PFLU_RS30160 -1.3 -1.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS03075 -1.3 -1.7 translation initiation factor Sui1 compare
PFLU_RS30590 -1.2 -1.7 hypothetical protein compare
PFLU_RS08655 -1.2 -1.1 heme ABC transporter permease compare
PFLU_RS26535 -1.2 -5.5 thiamine phosphate synthase compare
PFLU_RS08675 -1.2 -0.8 DsbE family thiol:disulfide interchange protein compare
PFLU_RS11525 -1.2 -2.8 GntR family transcriptional regulator compare
PFLU_RS04445 -1.2 -3.8 ABC transporter substrate-binding protein compare
PFLU_RS07245 -1.2 -2.8 DegQ family serine endoprotease compare
PFLU_RS26530 -1.2 -8.8 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS02045 -1.2 -9.7 glutamate synthase large subunit compare
PFLU_RS18615 -1.2 -1.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS24160 -1.2 -3.4 HAMP domain-containing protein compare
PFLU_RS06310 -1.2 -2.9 sigma E protease regulator RseP compare
PFLU_RS25815 -1.2 -1.7 transcription termination/antitermination protein NusA compare
PFLU_RS07230 -1.2 -4.6 RNA polymerase sigma factor RpoE compare
PFLU_RS22075 -1.2 -8.1 DUF3108 domain-containing protein compare
PFLU_RS01690 -1.2 -5.2 nitrogen regulation protein NR(II) compare
PFLU_RS04220 -1.1 -4.6 FadR family transcriptional regulator compare
PFLU_RS03645 -1.1 -3.1 tetratricopeptide repeat protein compare
PFLU_RS23100 -1.1 -3.2 ribonuclease E compare
PFLU_RS20660 -1.1 -7.2 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS21995 -1.1 -2.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS18700 -1.1 -2.3 hypothetical protein compare
PFLU_RS12725 -1.1 -2.2 GNAT family N-acetyltransferase compare
PFLU_RS10580 -1.1 -6.8 CoA transferase subunit B conserved
PFLU_RS27650 -1.1 -7.8 biotin synthase BioB compare
PFLU_RS04440 -1.1 -5.2 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS04430 -1.1 -4.0 ATP-binding cassette domain-containing protein compare
PFLU_RS29780 -1.1 -2.4 acyl-CoA thioesterase compare
PFLU_RS27465 -1.1 -1.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS18735 -1.1 -1.6 hypothetical protein compare
PFLU_RS22070 -1.1 -1.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS04140 -1.1 -2.8 response regulator transcription factor compare
PFLU_RS04945 -1.1 -2.3 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS01660 -1.0 -1.1 rhodanese-like domain-containing protein compare
PFLU_RS01005 -1.0 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS22835 -1.0 -4.7 amidotransferase compare
PFLU_RS13015 -1.0 -3.4 precorrin-4 C(11)-methyltransferase compare
PFLU_RS07785 -1.0 -5.1 VacJ family lipoprotein compare
PFLU_RS13050 -1.0 -3.5 VWA domain-containing protein compare
PFLU_RS13475 -1.0 -6.5 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
PFLU_RS24590 -1.0 -2.3 cytochrome c assembly protein compare
PFLU_RS02430 -1.0 -7.5 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS21740 -1.0 -4.2 Hpt domain-containing protein compare
PFLU_RS20765 -1.0 -2.2 hypothetical protein compare
PFLU_RS15795 -1.0 -1.9 hypothetical protein compare
PFLU_RS28420 -1.0 -4.9 thiazole synthase compare
PFLU_RS09305 -0.9 -7.5 hypothetical protein compare
PFLU_RS30165 -0.9 -4.0 ParA family protein compare
PFLU_RS05655 -0.9 -2.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS01685 -0.9 -3.0 nitrogen regulation protein NR(I) compare
PFLU_RS26660 -0.9 -1.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS25925 -0.9 -1.9 RnfH family protein compare
PFLU_RS00065 -0.9 -3.9 lysophospholipid acyltransferase compare
PFLU_RS08620 -0.9 -3.0 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS13350 -0.9 -1.5 ParD-like family protein compare
PFLU_RS26595 -0.9 -0.6 lipoprotein compare
PFLU_RS19665 -0.9 -1.5 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS30520 -0.9 -2.8 ketoacyl-ACP synthase III compare
PFLU_RS11215 -0.9 -2.6 ABC transporter ATP-binding protein compare
PFLU_RS04330 -0.9 -6.3 TIGR02099 family protein compare
PFLU_RS23390 -0.9 -1.7 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS17750 -0.9 -1.3 pirin family protein compare
PFLU_RS24825 -0.8 -1.8 Fe-S cluster assembly protein IscX compare
PFLU_RS20690 -0.8 -2.5 hypothetical protein compare
PFLU_RS12635 -0.8 -2.0 conjugal transfer protein TraR compare
PFLU_RS25220 -0.8 -3.9 ubiquinol oxidase subunit II compare
PFLU_RS08625 -0.8 -2.6 molybdenum cofactor biosynthesis protein B compare
PFLU_RS08490 -0.8 -1.4 DEAD/DEAH box helicase compare
PFLU_RS28965 -0.8 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS12395 -0.8 -2.2 zinc ribbon domain-containing protein compare
PFLU_RS06230 -0.8 -3.1 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
PFLU_RS29885 -0.8 -5.0 LysR family transcriptional regulator compare
PFLU_RS22600 -0.8 -1.3 RNA polymerase sigma factor SigX compare
PFLU_RS12450 -0.8 -5.5 cyclic peptide export ABC transporter compare
PFLU_RS00530 -0.8 -1.5 DUF2388 domain-containing protein compare
PFLU_RS29275 -0.8 -4.2 DUF484 family protein compare
PFLU_RS22520 -0.8 -1.4 GntR family transcriptional regulator compare
PFLU_RS18595 -0.8 -2.0 cupin domain-containing protein compare
PFLU_RS22015 -0.8 -4.6 cobalamin biosynthesis protein compare
PFLU_RS03025 -0.8 -4.0 tRNA dihydrouridine synthase DusB compare
PFLU_RS08180 -0.8 -2.3 ketoacyl-ACP synthase III compare
PFLU_RS26890 -0.8 -4.4 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS07645 -0.8 -2.2 hypothetical protein compare
PFLU_RS03100 -0.8 -2.0 hypothetical protein compare
PFLU_RS10955 -0.8 -2.9 peptide-methionine (S)-S-oxide reductase MsrA compare
PFLU_RS09495 -0.8 -2.5 helix-turn-helix transcriptional regulator compare
PFLU_RS00070 -0.7 -1.9 tetratricopeptide repeat protein compare
PFLU_RS29750 -0.7 -3.8 phosphate signaling complex protein PhoU compare
PFLU_RS05630 -0.7 -1.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS06320 -0.7 -1.9 OmpH family outer membrane protein compare
PFLU_RS29090 -0.7 -3.6 exopolyphosphatase compare
PFLU_RS13580 -0.7 -2.7 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS15065 -0.7 -2.2 IclR family transcriptional regulator compare
PFLU_RS08165 -0.7 -0.8 acyl carrier protein compare
PFLU_RS13845 -0.7 -1.8 hypothetical protein compare
PFLU_RS25025 -0.7 -1.6 hypothetical protein compare
PFLU_RS19160 -0.7 -3.8 endopeptidase La compare
PFLU_RS29255 -0.7 -1.5 iron donor protein CyaY compare
PFLU_RS14730 -0.7 -3.0 response regulator compare
PFLU_RS24805 -0.7 -2.7 helix-turn-helix domain-containing protein compare
PFLU_RS21360 -0.7 -1.0 MarR family transcriptional regulator compare
PFLU_RS20540 -0.7 -0.5 phosphoribosylanthranilate isomerase compare
PFLU_RS04505 -0.7 -2.6 hypothetical protein compare
PFLU_RS02365 -0.7 -4.2 glycosyltransferase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Carnitine hydrochloride in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Carnitine hydrochloride across organisms