Experiment set25S90 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium acetate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS02275 +2.7 7.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS21770 +2.5 13.1 flagellar motor switch protein FliG compare
PFLU_RS14715 +2.2 13.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS21775 +2.2 13.4 flagellar basal body M-ring protein FliF compare
PFLU_RS00935 +2.2 15.0 EAL domain-containing protein conserved
PFLU_RS29810 +1.9 12.8 LysR family transcriptional regulator compare
PFLU_RS00460 +1.9 13.8 glutamate/aspartate:proton symporter GltP compare
PFLU_RS02265 +1.9 14.8 EAL domain-containing protein compare
PFLU_RS25865 +1.8 3.2 YhbY family RNA-binding protein compare
PFLU_RS29815 +1.8 6.5 aspartate ammonia-lyase compare
PFLU_RS21725 +1.7 8.0 flagellar motor switch protein FliM compare
PFLU_RS06055 +1.5 2.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS13795 +1.4 2.2 hypothetical protein compare
PFLU_RS13715 +1.4 1.5 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS02825 +1.3 3.1 phosphate starvation-inducible protein PsiF compare
PFLU_RS21780 +1.3 2.5 flagellar hook-basal body complex protein FliE compare
PFLU_RS13885 +1.3 2.5 hypothetical protein compare
PFLU_RS07540 +1.3 1.7 class II glutamine amidotransferase compare
PFLU_RS11415 +1.3 2.3 protein glxC compare
PFLU_RS29780 +1.3 6.5 acyl-CoA thioesterase compare
PFLU_RS29020 +1.2 7.4 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PFLU_RS01285 +1.2 1.5 HAMP domain-containing protein compare
PFLU_RS07630 +1.2 9.5 transglycosylase SLT domain-containing protein compare
PFLU_RS12385 +1.2 2.9 methyl-accepting chemotaxis protein compare
PFLU_RS22535 +1.1 8.8 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS15990 +1.1 1.7 SDR family oxidoreductase compare
PFLU_RS21730 +1.1 6.0 flagellar basal body-associated protein FliL compare
PFLU_RS20845 +1.1 2.0 hypothetical protein compare
PFLU_RS20335 +1.1 2.2 hypothetical protein compare
PFLU_RS29340 +1.1 5.5 bifunctional diguanylate cyclase/phosphodiesterase compare
PFLU_RS19550 +1.1 1.1 ABC transporter ATP-binding protein compare
PFLU_RS00190 +1.1 1.6 DUF883 domain-containing protein compare
PFLU_RS15785 +1.0 2.8 type II secretion system protein GspH compare
PFLU_RS28820 +1.0 2.9 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS12210 +1.0 1.8 hypothetical protein compare
PFLU_RS15225 +1.0 3.0 AMP-binding protein compare
PFLU_RS15790 +1.0 2.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS15220 +1.0 3.7 hypothetical protein compare
PFLU_RS17125 +1.0 5.2 VWA domain-containing protein compare
PFLU_RS26955 +1.0 7.4 sugar nucleotide-binding protein compare
PFLU_RS17110 +1.0 3.1 DUF58 domain-containing protein compare
PFLU_RS06630 +1.0 2.6 ABC transporter ATP-binding protein compare
PFLU_RS02700 +1.0 3.1 ammonia-dependent NAD(+) synthetase compare
PFLU_RS21240 +1.0 2.3 hypothetical protein compare
PFLU_RS14875 +1.0 3.2 hypothetical protein compare
PFLU_RS00445 +1.0 2.6 hypothetical protein compare
PFLU_RS27805 +1.0 2.6 sarcosine oxidase subunit gamma family protein compare
PFLU_RS09500 +1.0 0.7 hypothetical protein compare
PFLU_RS14690 +1.0 2.7 hypothetical protein compare
PFLU_RS08575 +1.0 2.3 hypothetical protein compare
PFLU_RS00435 +1.0 7.5 PAS domain-containing protein compare
PFLU_RS17130 +1.0 2.5 protein BatD compare
PFLU_RS18885 +1.0 2.3 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS07525 +1.0 1.6 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS22390 +1.0 3.1 hypothetical protein compare
PFLU_RS21645 +1.0 5.6 chemotaxis protein CheA compare
PFLU_RS25190 +1.0 2.6 hypothetical protein compare
PFLU_RS17115 +0.9 4.8 DUF4381 domain-containing protein compare
PFLU_RS09720 +0.9 1.9 single-stranded DNA-binding protein compare
PFLU_RS02775 +0.9 1.9 urease accessory protein UreF compare
PFLU_RS00155 +0.9 5.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS06530 +0.9 2.3 collagen-like triple helix repeat-containing protein compare
PFLU_RS02705 +0.9 4.2 nicotinate phosphoribosyltransferase compare
PFLU_RS29165 +0.9 3.5 TIGR02444 family protein compare
PFLU_RS21625 +0.9 6.5 ParA family protein compare
PFLU_RS23210 +0.9 5.9 pilus assembly protein PilZ compare
PFLU_RS21570 +0.9 2.0 exonuclease compare
PFLU_RS31275 +0.9 1.1 hypothetical protein compare
PFLU_RS15200 +0.9 1.4 ABC transporter substrate-binding protein compare
PFLU_RS17895 +0.9 3.0 glycosyltransferase family 2 protein compare
PFLU_RS05890 +0.9 1.0 recombination regulator RecX compare
PFLU_RS14125 +0.9 2.0 lysozyme compare
PFLU_RS13250 +0.8 2.9 sugar kinase compare
PFLU_RS04660 +0.8 4.7 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS24175 +0.8 4.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS05660 +0.8 6.0 glycerol kinase GlpK compare
PFLU_RS22185 +0.8 2.5 hypothetical protein compare
PFLU_RS11685 +0.8 2.1 AraC family transcriptional regulator compare
PFLU_RS15380 +0.8 2.6 DUF1652 domain-containing protein compare
PFLU_RS24690 +0.8 5.6 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS30520 +0.8 3.4 ketoacyl-ACP synthase III compare
PFLU_RS17120 +0.8 3.9 VWA domain-containing protein compare
PFLU_RS30525 +0.8 5.6 SDR family oxidoreductase compare
PFLU_RS21925 +0.8 2.9 YecA family protein compare
PFLU_RS21640 +0.8 4.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS31825 +0.8 2.4 hypothetical protein compare
PFLU_RS28270 +0.8 2.1 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS03555 +0.8 0.8 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS21910 +0.8 6.5 BamA/TamA family outer membrane protein compare
PFLU_RS14505 +0.8 3.0 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada compare
PFLU_RS21670 +0.8 4.1 flagellar biosynthesis protein FlhF compare
PFLU_RS31710 +0.8 1.2 hypothetical protein compare
PFLU_RS15515 +0.8 2.4 hypothetical protein compare
PFLU_RS08185 +0.8 4.2 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS01875 +0.8 1.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS16315 +0.8 2.4 hypothetical protein compare
PFLU_RS08180 +0.8 2.7 ketoacyl-ACP synthase III compare
PFLU_RS17675 +0.7 2.3 hypothetical protein compare
PFLU_RS14440 +0.7 0.8 hypothetical protein compare
PFLU_RS25955 +0.7 0.9 hypothetical protein compare
PFLU_RS30470 +0.7 0.9 addiction module antidote protein compare
PFLU_RS02455 +0.7 1.2 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS12840 +0.7 1.6 3-hydroxybutyrate dehydrogenase compare
PFLU_RS28310 +0.7 1.1 response regulator compare
PFLU_RS18725 +0.7 0.7 alpha/beta hydrolase compare
PFLU_RS25040 +0.7 2.0 DUF3077 domain-containing protein compare
PFLU_RS08600 +0.7 2.3 glutaredoxin family protein compare
PFLU_RS12955 +0.7 3.5 NAD(P)H-dependent oxidoreductase compare
PFLU_RS21610 +0.7 3.1 DUF2802 domain-containing protein compare
PFLU_RS29480 +0.7 5.1 exodeoxyribonuclease III compare
PFLU_RS16445 +0.7 1.4 PIG-L family deacetylase compare
PFLU_RS12175 +0.7 0.7 methyl-accepting chemotaxis protein compare
PFLU_RS21960 +0.7 4.2 hypothetical protein compare
PFLU_RS12915 +0.7 1.3 methyltransferase domain-containing protein compare
PFLU_RS23895 +0.7 2.2 DUF1289 domain-containing protein compare
PFLU_RS16190 +0.7 2.2 AraC family transcriptional regulator compare
PFLU_RS28395 +0.7 4.1 DUF4426 domain-containing protein compare
PFLU_RS28340 +0.7 2.2 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
PFLU_RS01660 +0.7 1.2 rhodanese-like domain-containing protein compare
PFLU_RS10180 +0.7 2.5 vanillate O-demethylase oxidoreductase VanB compare
PFLU_RS30070 +0.7 1.7 hypothetical protein compare
PFLU_RS11030 +0.7 2.2 response regulator transcription factor compare
PFLU_RS04785 +0.7 3.5 ABC transporter substrate-binding protein compare
PFLU_RS31100 +0.7 1.9 preprotein translocase subunit SecG compare
PFLU_RS26490 +0.7 2.0 cation diffusion facilitator family transporter compare
PFLU_RS01910 +0.7 1.2 sterol-binding protein compare
PFLU_RS03535 +0.7 1.2 YscO family type III secretion system apparatus protein compare
PFLU_RS15315 +0.7 4.2 lipase compare
PFLU_RS14195 +0.7 0.9 hypothetical protein compare
PFLU_RS00440 +0.7 4.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS13945 +0.7 1.1 hypothetical protein compare
PFLU_RS31075 +0.6 3.1 hypothetical protein compare
PFLU_RS20895 +0.6 3.3 OPT family oligopeptide transporter compare
PFLU_RS22645 +0.6 4.6 EamA family transporter compare
PFLU_RS06645 +0.6 4.8 branched-chain amino acid ABC transporter substrate-binding protein compare
PFLU_RS17915 +0.6 2.4 glycosyltransferase family 4 protein compare
PFLU_RS15130 +0.6 2.6 cupin compare
PFLU_RS29180 +0.6 3.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PFLU_RS08525 +0.6 2.2 glutathione peroxidase compare
PFLU_RS26400 +0.6 1.1 HAD family hydrolase compare
PFLU_RS12205 +0.6 1.1 DNA binding protein compare
PFLU_RS28060 +0.6 3.9 polysaccharide lyase family 7 protein compare
PFLU_RS24340 +0.6 1.9 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS29505 +0.6 2.0 DNA-directed RNA polymerase subunit omega compare
PFLU_RS05315 +0.6 2.6 GntR family transcriptional regulator compare
PFLU_RS11135 +0.6 3.4 substrate-binding domain-containing protein compare
PFLU_RS02575 +0.6 4.1 GTPase HflX compare
PFLU_RS21615 +0.6 3.6 chemotaxis protein CheW compare
PFLU_RS26170 +0.6 2.1 elongation factor GreAB compare
PFLU_RS29975 +0.6 1.5 ATP-binding cassette domain-containing protein compare
PFLU_RS04845 +0.6 1.8 hypothetical protein compare
PFLU_RS19275 +0.6 1.9 copper homeostasis membrane protein CopD compare
PFLU_RS17105 +0.6 2.5 MoxR family ATPase compare
PFLU_RS04570 +0.6 1.6 class I SAM-dependent methyltransferase compare
PFLU_RS22100 +0.6 3.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PFLU_RS04485 +0.6 4.5 uracil phosphoribosyltransferase compare
PFLU_RS23390 +0.6 1.0 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS10560 +0.6 2.6 porphobilinogen synthase compare
PFLU_RS17900 +0.6 2.2 acetyltransferase compare
PFLU_RS16440 +0.6 1.8 acyl-CoA dehydrogenase compare
PFLU_RS13470 +0.6 1.5 MgtC/SapB family protein compare
PFLU_RS17095 +0.6 4.8 NAD-glutamate dehydrogenase compare
PFLU_RS23350 +0.6 3.5 ABC transporter substrate-binding protein compare
PFLU_RS20330 +0.6 1.8 cold-shock protein compare
PFLU_RS08490 +0.6 0.7 DEAD/DEAH box helicase compare
PFLU_RS06640 +0.6 4.5 high-affinity branched-chain amino acid ABC transporter permease LivH compare
PFLU_RS24335 +0.6 4.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS25580 +0.6 2.6 YfiR family protein compare
PFLU_RS22520 +0.6 1.1 GntR family transcriptional regulator compare
PFLU_RS14780 +0.6 2.3 acyl-CoA dehydrogenase compare
PFLU_RS03680 +0.6 2.5 YkgJ family cysteine cluster protein compare
PFLU_RS16935 +0.6 1.3 CoA ester lyase compare
PFLU_RS08165 +0.6 0.9 acyl carrier protein compare
PFLU_RS23460 +0.6 1.4 antibiotic biosynthesis monooxygenase compare
PFLU_RS18605 +0.6 2.7 secretin compare
PFLU_RS23815 +0.6 4.6 GGDEF and EAL domain-containing protein compare
PFLU_RS01070 +0.6 1.7 alpha/beta hydrolase compare
PFLU_RS13955 +0.6 2.3 hypothetical protein compare
PFLU_RS14725 +0.6 2.6 hybrid sensor histidine kinase/response regulator compare
PFLU_RS15660 +0.6 2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS03035 +0.6 1.5 50S ribosomal protein L11 methyltransferase compare
PFLU_RS19640 +0.6 1.6 5-oxoprolinase subunit PxpA compare
PFLU_RS10550 +0.6 2.8 glutathione S-transferase compare
PFLU_RS15685 +0.6 3.6 TauD/TfdA family dioxygenase compare
PFLU_RS12215 +0.6 3.2 methyl-accepting chemotaxis protein compare
PFLU_RS06430 +0.6 4.1 RNA polymerase sigma factor RpoS compare
PFLU_RS00040 +0.6 4.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS05340 +0.6 1.3 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS11055 +0.6 1.7 hypothetical protein compare
PFLU_RS28035 +0.6 3.9 transporter substrate-binding domain-containing protein compare
PFLU_RS17815 +0.6 1.1 response regulator compare
PFLU_RS06800 +0.6 3.2 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS06955 +0.6 2.2 helix-turn-helix domain-containing protein compare
PFLU_RS28320 +0.6 1.4 glutathione synthase compare
PFLU_RS27835 +0.6 2.6 low specificity L-threonine aldolase compare
PFLU_RS02045 +0.5 4.9 glutamate synthase large subunit compare
PFLU_RS12230 +0.5 1.4 carboxymuconolactone decarboxylase family protein compare
PFLU_RS00430 +0.5 3.9 N-acetylmuramoyl-L-alanine amidase compare
PFLU_RS04175 +0.5 3.8 acyl-CoA dehydrogenase compare
PFLU_RS22660 +0.5 3.9 serine acetyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium acetate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium acetate across organisms