Experiment set25S76 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Shikimic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS30900 +2.6 3.8 hypothetical protein compare
PFLU_RS15990 +2.2 2.9 SDR family oxidoreductase compare
PFLU_RS05020 +1.9 2.1 DUF1120 domain-containing protein compare
PFLU_RS17545 +1.9 2.2 DUF465 domain-containing protein compare
PFLU_RS19900 +1.8 3.5 general secretion pathway protein GspM compare
PFLU_RS15420 +1.8 2.9 hypothetical protein compare
PFLU_RS12715 +1.8 1.2 fumarylacetoacetate hydrolase family protein compare
PFLU_RS13765 +1.8 1.9 hypothetical protein compare
PFLU_RS03570 +1.8 1.9 hypothetical protein compare
PFLU_RS03100 +1.7 1.7 hypothetical protein compare
PFLU_RS10670 +1.6 3.5 hypothetical protein compare
PFLU_RS19720 +1.6 2.6 hypothetical protein compare
PFLU_RS17380 +1.5 3.7 DUF924 family protein compare
PFLU_RS14195 +1.5 1.5 hypothetical protein compare
PFLU_RS21570 +1.5 2.8 exonuclease compare
PFLU_RS03555 +1.5 1.1 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS29400 +1.5 1.3 DUF1127 domain-containing protein compare
PFLU_RS13665 +1.4 1.0 MarR family transcriptional regulator compare
PFLU_RS31595 +1.4 3.6 hypothetical protein compare
PFLU_RS18735 +1.4 1.3 hypothetical protein compare
PFLU_RS15755 +1.4 1.7 type II secretion system protein M compare
PFLU_RS13965 +1.4 3.1 hypothetical protein compare
PFLU_RS13825 +1.4 0.9 hypothetical protein compare
PFLU_RS31535 +1.4 1.2 hypothetical protein compare
PFLU_RS14525 +1.3 3.5 c-type cytochrome compare
PFLU_RS03995 +1.3 1.5 hypothetical protein compare
PFLU_RS08280 +1.3 2.7 hypothetical protein compare
PFLU_RS10330 +1.3 3.5 adenylyl-sulfate kinase compare
PFLU_RS25815 +1.3 1.7 transcription termination/antitermination protein NusA compare
PFLU_RS31275 +1.3 0.7 hypothetical protein compare
PFLU_RS09685 +1.2 3.1 hypothetical protein compare
PFLU_RS16655 +1.2 3.7 hypothetical protein compare
PFLU_RS19800 +1.2 2.7 cupin domain-containing protein compare
PFLU_RS11025 +1.2 3.0 hypothetical protein compare
PFLU_RS10355 +1.2 2.4 DeoR family transcriptional regulator compare
PFLU_RS13365 +1.2 1.0 hypothetical protein compare
PFLU_RS19865 +1.2 5.2 FAD-dependent oxidoreductase compare
PFLU_RS19050 +1.2 2.6 spore coat protein U domain-containing protein compare
PFLU_RS31820 +1.2 2.7 MFS sugar transporter compare
PFLU_RS24305 +1.2 1.5 antibiotic biosynthesis monooxygenase compare
PFLU_RS03110 +1.2 3.1 pyrophosphatase compare
PFLU_RS25040 +1.1 2.3 DUF3077 domain-containing protein compare
PFLU_RS22390 +1.1 2.0 hypothetical protein compare
PFLU_RS26660 +1.1 2.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS16600 +1.1 3.5 VOC family protein compare
PFLU_RS19395 +1.1 3.3 Lrp/AsnC family transcriptional regulator compare
PFLU_RS22875 +1.1 3.3 hypothetical protein compare
PFLU_RS28820 +1.1 1.5 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS04570 +1.1 2.2 class I SAM-dependent methyltransferase compare
PFLU_RS00070 +1.1 1.9 tetratricopeptide repeat protein compare
PFLU_RS10340 +1.1 1.0 hypothetical protein compare
PFLU_RS11055 +1.1 2.0 hypothetical protein compare
PFLU_RS04835 +1.1 1.1 hypothetical protein compare
PFLU_RS07480 +1.1 2.1 nitroreductase family protein compare
PFLU_RS25785 +1.0 2.4 BON domain-containing protein compare
PFLU_RS20870 +1.0 1.4 hypothetical protein compare
PFLU_RS08490 +1.0 1.1 DEAD/DEAH box helicase compare
PFLU_RS12655 +1.0 2.0 hypothetical protein compare
PFLU_RS12740 +1.0 1.3 BcpO-related WXXGXW repeat protein compare
PFLU_RS29165 +1.0 2.1 TIGR02444 family protein compare
PFLU_RS20960 +1.0 2.5 hypothetical protein compare
PFLU_RS18420 +1.0 0.9 hypothetical protein compare
PFLU_RS31755 +1.0 0.8 hypothetical protein compare
PFLU_RS07790 +1.0 2.4 PilZ domain-containing protein compare
PFLU_RS21360 +1.0 1.0 MarR family transcriptional regulator compare
PFLU_RS21600 +1.0 1.8 response regulator transcription factor compare
PFLU_RS28895 +1.0 0.7 DUF2388 domain-containing protein compare
PFLU_RS06035 +1.0 2.9 purine-binding chemotaxis protein CheW compare
PFLU_RS01095 +1.0 1.9 ribbon-helix-helix protein, CopG family compare
PFLU_RS16510 +0.9 1.3 thiol-disulfide oxidoreductase DCC family protein compare
PFLU_RS03930 +0.9 2.1 DNA gyrase inhibitor YacG compare
PFLU_RS22215 +0.9 1.9 3-phosphoglycerate kinase compare
PFLU_RS13105 +0.9 2.3 nuclear transport factor 2 family protein compare
PFLU_RS19635 +0.9 2.1 SDR family oxidoreductase compare
PFLU_RS15975 +0.9 3.2 LuxR family transcriptional regulator compare
PFLU_RS12405 +0.9 2.8 ATP-dependent Clp protease ATP-binding subunit compare
PFLU_RS31005 +0.9 2.0 tyrosine-type recombinase/integrase compare
PFLU_RS07520 +0.9 0.8 hypothetical protein compare
PFLU_RS11795 +0.9 3.4 YbfB/YjiJ family MFS transporter compare
PFLU_RS02775 +0.9 0.7 urease accessory protein UreF compare
PFLU_RS25955 +0.9 1.3 hypothetical protein compare
PFLU_RS21485 +0.9 2.2 response regulator compare
PFLU_RS22595 +0.9 0.5 OmpA family protein compare
PFLU_RS11700 +0.9 2.6 sugar ABC transporter substrate-binding protein compare
PFLU_RS31465 +0.9 3.6 hypothetical protein compare
PFLU_RS18075 +0.9 1.9 LysR family transcriptional regulator compare
PFLU_RS10250 +0.9 2.3 glycosyltransferase family 2 protein compare
PFLU_RS11565 +0.9 2.0 GntP family transporter compare
PFLU_RS12235 +0.9 2.8 hypothetical protein compare
PFLU_RS31830 +0.9 0.6 hypothetical protein compare
PFLU_RS04780 +0.9 0.9 hypothetical protein compare
PFLU_RS31440 +0.9 0.7 hypothetical protein compare
PFLU_RS24535 +0.9 1.6 DUF3509 domain-containing protein compare
PFLU_RS23775 +0.9 3.9 hypothetical protein compare
PFLU_RS12210 +0.9 1.4 hypothetical protein compare
PFLU_RS19325 +0.9 2.3 DASS family sodium-coupled anion symporter compare
PFLU_RS27790 +0.9 2.5 hypothetical protein compare
PFLU_RS24980 +0.8 1.5 purine-binding chemotaxis protein CheW compare
PFLU_RS11875 +0.8 2.1 general secretion pathway protein GspK compare
PFLU_RS05060 +0.8 1.7 GIY-YIG nuclease family protein compare
PFLU_RS13915 +0.8 2.5 hypothetical protein compare
PFLU_RS26275 +0.8 2.9 MFS transporter compare
PFLU_RS15555 +0.8 2.7 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
PFLU_RS09480 +0.8 0.8 hypothetical protein compare
PFLU_RS20995 +0.8 2.2 3-dehydroquinate dehydratase compare
PFLU_RS02005 +0.8 3.1 type IV pilus assembly protein PilM compare
PFLU_RS23895 +0.8 1.7 DUF1289 domain-containing protein compare
PFLU_RS27785 +0.8 1.9 DUF2780 domain-containing protein compare
PFLU_RS01860 +0.8 1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS30825 +0.8 2.0 hypothetical protein compare
PFLU_RS20850 +0.8 3.2 hypothetical protein compare
PFLU_RS10980 +0.8 1.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS14990 +0.8 1.7 helix-turn-helix transcriptional regulator compare
PFLU_RS10215 +0.8 2.8 membrane protein compare
PFLU_RS26490 +0.8 1.2 cation diffusion facilitator family transporter compare
PFLU_RS17990 +0.8 2.0 ABC transporter substrate-binding protein compare
PFLU_RS30485 +0.8 2.0 hypothetical protein compare
PFLU_RS09505 +0.8 1.4 HU family DNA-binding protein compare
PFLU_RS31740 +0.8 1.1 hypothetical protein compare
PFLU_RS22190 +0.8 0.6 hypothetical protein compare
PFLU_RS28285 +0.8 1.8 hypothetical protein compare
PFLU_RS11115 +0.8 3.1 methyl-accepting chemotaxis protein compare
PFLU_RS01675 +0.8 1.3 tRNA (cytidine(34)-2'-O)-methyltransferase compare
PFLU_RS31710 +0.8 0.9 hypothetical protein compare
PFLU_RS09020 +0.8 2.6 OsmC family protein compare
PFLU_RS18310 +0.8 3.4 hypothetical protein compare
PFLU_RS14355 +0.8 1.1 DUF2388 domain-containing protein compare
PFLU_RS04070 +0.8 1.5 peptide chain release factor 3 compare
PFLU_RS30040 +0.8 2.3 protease modulator HflK compare
PFLU_RS18095 +0.8 1.3 GlxA family transcriptional regulator compare
PFLU_RS14395 +0.8 1.2 DUF664 domain-containing protein compare
PFLU_RS18175 +0.8 1.0 sugar ABC transporter substrate-binding protein compare
PFLU_RS19130 +0.8 3.3 DUF2242 domain-containing protein compare
PFLU_RS25865 +0.8 1.2 YhbY family RNA-binding protein compare
PFLU_RS16050 +0.8 2.3 oxidoreductase compare
PFLU_RS02455 +0.8 0.9 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS17570 +0.8 1.4 DNA polymerase Y family protein compare
PFLU_RS15295 +0.7 2.7 alpha/beta hydrolase compare
PFLU_RS12545 +0.7 3.2 LysR family transcriptional regulator compare
PFLU_RS02180 +0.7 0.5 thioredoxin TrxC compare
PFLU_RS17675 +0.7 1.6 hypothetical protein compare
PFLU_RS02515 +0.7 1.6 flagellar motor protein MotB compare
PFLU_RS31025 +0.7 1.6 DUF3309 domain-containing protein compare
PFLU_RS31795 +0.7 1.5 hypothetical protein compare
PFLU_RS27975 +0.7 2.1 choline ABC transporter ATP-binding protein compare
PFLU_RS13710 +0.7 2.0 DUF1294 domain-containing protein compare
PFLU_RS09725 +0.7 1.8 DUF3158 family protein compare
PFLU_RS08545 +0.7 1.9 GAF domain-containing protein compare
PFLU_RS08155 +0.7 0.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS04655 +0.7 2.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
PFLU_RS17145 +0.7 2.0 glutathione S-transferase compare
PFLU_RS07910 +0.7 0.5 type 1 fimbrial protein compare
PFLU_RS05890 +0.7 0.5 recombination regulator RecX compare
PFLU_RS13845 +0.7 0.8 hypothetical protein compare
PFLU_RS20755 +0.7 2.5 hypothetical protein compare
PFLU_RS02080 +0.7 2.1 3-oxoacyl-ACP reductase FabG compare
PFLU_RS02095 +0.7 1.3 hypothetical protein compare
PFLU_RS11135 +0.7 2.1 substrate-binding domain-containing protein compare
PFLU_RS14980 +0.7 1.8 RidA family protein compare
PFLU_RS02945 +0.7 2.2 DUF2946 domain-containing protein compare
PFLU_RS02745 +0.7 3.0 ABC transporter ATP-binding protein compare
PFLU_RS10880 +0.7 1.9 LLM class flavin-dependent oxidoreductase compare
PFLU_RS04530 +0.7 1.1 hypothetical protein compare
PFLU_RS00445 +0.7 0.5 hypothetical protein compare
PFLU_RS16335 +0.7 2.5 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS16695 +0.7 1.8 branched-chain amino acid ABC transporter permease compare
PFLU_RS17705 +0.7 2.2 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS22535 +0.7 4.0 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS25355 +0.7 2.3 CreA family protein compare
PFLU_RS13820 +0.7 3.2 hypothetical protein compare
PFLU_RS15000 +0.7 1.3 HAMP domain-containing histidine kinase compare
PFLU_RS20800 +0.7 3.6 HAD hydrolase-like protein compare
PFLU_RS22355 +0.7 2.3 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS14385 +0.7 1.7 hypothetical protein compare
PFLU_RS11370 +0.7 1.6 sarcosine oxidase compare
PFLU_RS29615 +0.7 1.5 type VI secretion system lipoprotein TssJ compare
PFLU_RS24590 +0.7 1.1 cytochrome c assembly protein compare
PFLU_RS20785 +0.7 3.1 LysR family transcriptional regulator compare
PFLU_RS06630 +0.7 1.0 ABC transporter ATP-binding protein compare
PFLU_RS28225 +0.7 3.4 hemolysin III family protein compare
PFLU_RS31190 +0.7 2.8 taurine ABC transporter substrate-binding protein compare
PFLU_RS08880 +0.7 3.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS10960 +0.7 1.6 transcriptional regulator LrhA compare
PFLU_RS15890 +0.7 2.3 amidase compare
PFLU_RS19820 +0.7 1.3 GNAT family N-acetyltransferase compare
PFLU_RS13795 +0.7 0.7 hypothetical protein compare
PFLU_RS15490 +0.7 3.0 NAD-dependent dehydratase compare
PFLU_RS04360 +0.7 2.4 class II fumarate hydratase compare
PFLU_RS14545 +0.6 0.9 hypothetical protein compare
PFLU_RS06250 +0.6 1.8 ArsC family reductase compare
PFLU_RS14210 +0.6 1.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS15150 +0.6 2.6 PAS domain S-box protein compare
PFLU_RS18030 +0.6 2.6 phytase compare
PFLU_RS14585 +0.6 2.1 DUF4946 domain-containing protein compare
PFLU_RS14300 +0.6 0.9 response regulator transcription factor compare
PFLU_RS15080 +0.6 2.2 APC family permease compare
PFLU_RS09495 +0.6 1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS20035 +0.6 3.0 ABC transporter substrate-binding protein compare
PFLU_RS16710 +0.6 1.0 nitrite reductase small subunit NirD compare
PFLU_RS14135 +0.6 1.6 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Shikimic Acid in Pseudomonas fluorescens SBW25-INTG

For carbon source Shikimic Acid across organisms