Experiment set25S66 for Pseudomonas fluorescens SBW25-INTG
D-(+)-Galactosamine hydrochloride carbon source
Group: carbon sourceMedia: MME_noCarbon + D-(+)-Galactosamine hydrochloride (10 mM), pH=7
Culturing: PseudoSBW25_INTG_ML3, 96 deep-well microplate; 1.2 mL volume, Aerobic, at 30 (C), shaken=1200 rpm
By: Andrew Frank on 1/31/23
Media components: 9.1 mM Potassium phosphate dibasic trihydrate, 20 mM 3-(N-morpholino)propanesulfonic acid, 4.3 mM Sodium Chloride, 10 mM Ammonium chloride, 0.41 mM Magnesium Sulfate Heptahydrate, 0.07 mM Calcium chloride dihydrate, MME Trace Minerals (0.5 mg/L EDTA tetrasodium tetrahydrate salt, 2 mg/L Ferric chloride, 0.05 mg/L Boric Acid, 0.05 mg/L Zinc chloride, 0.03 mg/L copper (II) chloride dihydrate, 0.05 mg/L Manganese (II) chloride tetrahydrate, 0.05 mg/L Diammonium molybdate, 0.05 mg/L Cobalt chloride hexahydrate, 0.05 mg/L Nickel (II) chloride hexahydrate)
Specific Phenotypes
For 13 genes in this experiment
For carbon source D-(+)-Galactosamine hydrochloride in Pseudomonas fluorescens SBW25-INTG
For carbon source D-(+)-Galactosamine hydrochloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| L-Arabinose utilization | 5 |
| Biogenesis of c-type cytochromes | 1 |
| Copper homeostasis | 1 |
| D-galactonate catabolism | 1 |
| Fatty Acid Biosynthesis FASII | 1 |
| mycolic acid synthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycolysis / Gluconeogenesis
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Fatty acid biosynthesis
- Glycine, serine and threonine metabolism
- Biosynthesis of unsaturated fatty acids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: