Experiment set25S57 for Pseudomonas fluorescens SBW25-INTG

Compare to:

4-Aminobutyric acid carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS18410 -4.7 -5.3 response regulator compare
PFLU_RS28695 -4.4 -7.8 phosphoglycerate dehydrogenase compare
PFLU_RS09720 -4.3 -2.0 single-stranded DNA-binding protein compare
PFLU_RS16390 -4.2 -1.4 DUF411 domain-containing protein compare
PFLU_RS28390 -4.2 -10.4 methionine biosynthesis protein MetW compare
PFLU_RS02790 -4.1 -1.7 TetR family transcriptional regulator compare
PFLU_RS30630 -4.1 -1.3 hypothetical protein compare
PFLU_RS20290 -4.0 -1.6 integration host factor subunit alpha compare
PFLU_RS13825 -3.9 -1.3 hypothetical protein compare
PFLU_RS11380 -3.9 -1.6 sarcosine oxidase subunit delta compare
PFLU_RS01895 -3.8 -7.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS21060 -3.8 -4.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS27365 -3.8 -10.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS27370 -3.8 -12.1 anthranilate phosphoribosyltransferase compare
PFLU_RS24765 -3.8 -20.4 2-isopropylmalate synthase compare
PFLU_RS28385 -3.8 -13.3 homoserine O-acetyltransferase compare
PFLU_RS04465 -3.7 -9.0 ATP phosphoribosyltransferase compare
PFLU_RS03970 -3.7 -11.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS30555 -3.7 -1.7 hypothetical protein compare
PFLU_RS25640 -3.6 -11.4 ketol-acid reductoisomerase compare
PFLU_RS17920 -3.6 -2.4 acyltransferase compare
PFLU_RS20565 -3.6 -11.8 3-isopropylmalate dehydrogenase compare
PFLU_RS31835 -3.5 -2.9 hypothetical protein compare
PFLU_RS28535 -3.5 -15.8 dihydroxy-acid dehydratase compare
PFLU_RS20510 -3.5 -10.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24025 -3.5 -11.3 quinolinate synthase NadA compare
PFLU_RS25360 -3.4 -8.5 glutamate 5-kinase compare
PFLU_RS04470 -3.4 -10.1 histidinol dehydrogenase compare
PFLU_RS02490 -3.4 -13.6 phosphoserine phosphatase SerB compare
PFLU_RS29780 -3.4 -6.5 acyl-CoA thioesterase compare
PFLU_RS20575 -3.4 -6.0 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02590 -3.4 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20970 -3.4 -1.1 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS26565 -3.3 -1.3 rRNA maturation RNase YbeY compare
PFLU_RS01620 -3.3 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS22895 -3.3 -22.0 PLP-dependent aminotransferase family protein compare
PFLU_RS05630 -3.3 -1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS07765 -3.3 -9.7 cupredoxin family protein compare
PFLU_RS00695 -3.3 -1.1 DUF2789 domain-containing protein compare
PFLU_RS03240 -3.3 -15.6 copper-translocating P-type ATPase compare
PFLU_RS23070 -3.3 -1.1 50S ribosomal protein L32 compare
PFLU_RS02115 -3.3 -2.4 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS28645 -3.3 -15.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS12980 -3.3 -2.3 nitrite/sulfite reductase compare
PFLU_RS00915 -3.3 -15.1 4-aminobutyrate--2-oxoglutarate transaminase conserved
PFLU_RS07225 -3.2 -16.7 L-aspartate oxidase compare
PFLU_RS31440 -3.2 -1.5 hypothetical protein compare
PFLU_RS29515 -3.2 -13.5 RidA family protein compare
PFLU_RS20580 -3.2 -11.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS08675 -3.2 -3.1 DsbE family thiol:disulfide interchange protein compare
PFLU_RS23065 -3.2 -9.6 phosphate acyltransferase PlsX compare
PFLU_RS27640 -3.2 -2.0 alpha/beta fold hydrolase compare
PFLU_RS01605 -3.2 -7.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS29095 -3.1 -21.4 polyphosphate kinase 1 compare
PFLU_RS22835 -3.1 -7.0 amidotransferase compare
PFLU_RS17545 -3.1 -1.0 DUF465 domain-containing protein compare
PFLU_RS19555 -3.1 -1.7 histidine phosphatase family protein compare
PFLU_RS18420 -3.1 -1.9 hypothetical protein compare
PFLU_RS12975 -3.1 -2.1 DUF934 domain-containing protein compare
PFLU_RS28165 -3.0 -11.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08505 -3.0 -5.4 protease HtpX compare
PFLU_RS12145 -3.0 -1.9 nuclear transport factor 2 family protein compare
PFLU_RS31620 -3.0 -4.0 integrase compare
PFLU_RS01610 -3.0 -8.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS20540 -3.0 -8.5 phosphoribosylanthranilate isomerase compare
PFLU_RS25645 -2.9 -1.9 acetolactate synthase small subunit compare
PFLU_RS00180 -2.9 -7.3 tryptophan synthase subunit beta compare
PFLU_RS07650 -2.9 -14.3 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS28655 -2.9 -12.0 HAD family hydrolase compare
PFLU_RS01900 -2.9 -6.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS13885 -2.9 -1.4 hypothetical protein compare
PFLU_RS00175 -2.8 -7.3 tryptophan synthase subunit alpha compare
PFLU_RS02355 -2.8 -8.2 GNAT family N-acetyltransferase compare
PFLU_RS27445 -2.8 -15.7 phosphotransferase compare
PFLU_RS08650 -2.8 -2.7 heme exporter protein CcmB compare
PFLU_RS17615 -2.7 -1.8 DeoR/GlpR transcriptional regulator compare
PFLU_RS27630 -2.7 -4.9 dethiobiotin synthase compare
PFLU_RS18940 -2.6 -7.3 acyl-CoA dehydrogenase compare
PFLU_RS28690 -2.6 -13.3 FAD-binding oxidoreductase compare
PFLU_RS02690 -2.6 -2.0 hypothetical protein compare
PFLU_RS04075 -2.6 -0.8 hypothetical protein compare
PFLU_RS11475 -2.6 -0.8 histidine kinase compare
PFLU_RS03075 -2.6 -1.2 translation initiation factor Sui1 compare
PFLU_RS02370 -2.6 -9.6 glycosyltransferase compare
PFLU_RS27650 -2.6 -14.4 biotin synthase BioB compare
PFLU_RS25715 -2.6 -7.8 RNA polymerase-binding protein DksA compare
PFLU_RS08670 -2.6 -6.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS05090 -2.5 -15.6 fumarylacetoacetase compare
PFLU_RS25750 -2.5 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS01625 -2.5 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS00210 -2.5 -1.6 OsmC family protein compare
PFLU_RS30490 -2.4 -4.0 hypothetical protein compare
PFLU_RS03235 -2.4 -6.2 Cu(I)-responsive transcriptional regulator compare
PFLU_RS24785 -2.4 -9.3 outer membrane protein assembly factor BamB compare
PFLU_RS04220 -2.4 -8.8 FadR family transcriptional regulator compare
PFLU_RS02280 -2.4 -13.6 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS18505 -2.4 -6.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS04385 -2.4 -8.6 RNase adapter RapZ compare
PFLU_RS02825 -2.4 -1.4 phosphate starvation-inducible protein PsiF compare
PFLU_RS22075 -2.4 -10.1 DUF3108 domain-containing protein compare
PFLU_RS16025 -2.4 -3.1 flavin-dependent monooxygenase compare
PFLU_RS05020 -2.3 -1.3 DUF1120 domain-containing protein compare
PFLU_RS13765 -2.3 -1.5 hypothetical protein compare
PFLU_RS27440 -2.3 -6.0 nucleotidyltransferase family protein compare
PFLU_RS08660 -2.3 -3.3 heme exporter protein CcmD compare
PFLU_RS11015 -2.3 -3.6 UTRA domain-containing protein compare
PFLU_RS31780 -2.3 -2.2 hypothetical protein compare
PFLU_RS18865 -2.3 -3.6 Na+/H+ antiporter subunit G compare
PFLU_RS07645 -2.3 -4.2 hypothetical protein compare
PFLU_RS15005 -2.3 -1.0 hypothetical protein compare
PFLU_RS22735 -2.2 -10.0 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS04455 -2.2 -5.4 BolA family transcriptional regulator compare
PFLU_RS12740 -2.2 -2.8 BcpO-related WXXGXW repeat protein compare
PFLU_RS11885 -2.2 -1.2 type II secretion system protein M compare
PFLU_RS18175 -2.2 -2.5 sugar ABC transporter substrate-binding protein compare
PFLU_RS28195 -2.2 -12.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS22725 -2.2 -2.5 transcriptional regulator compare
PFLU_RS22095 -2.2 -12.8 GTP diphosphokinase compare
PFLU_RS04780 -2.2 -2.3 hypothetical protein compare
PFLU_RS21665 -2.2 -4.1 MinD/ParA family protein compare
PFLU_RS28755 -2.2 -6.6 ABC transporter permease subunit compare
PFLU_RS23920 -2.1 -1.5 septation protein A compare
PFLU_RS20515 -2.1 -3.2 amidophosphoribosyltransferase compare
PFLU_RS28650 -2.1 -3.8 RNA pyrophosphohydrolase compare
PFLU_RS27620 -2.1 -11.3 acyl-CoA dehydrogenase compare
PFLU_RS28765 -2.1 -8.4 polyamine ABC transporter ATP-binding protein compare
PFLU_RS22190 -2.1 -1.0 hypothetical protein compare
PFLU_RS12970 -2.1 -2.8 MerR family transcriptional regulator compare
PFLU_RS13895 -2.1 -0.9 helix-turn-helix transcriptional regulator compare
PFLU_RS28760 -2.1 -10.6 ABC transporter permease subunit compare
PFLU_RS31535 -2.1 -1.0 hypothetical protein compare
PFLU_RS06815 -2.1 -7.2 TetR family transcriptional regulator compare
PFLU_RS24720 -2.1 -5.9 trehalose operon repressor compare
PFLU_RS11685 -2.1 -2.9 AraC family transcriptional regulator compare
PFLU_RS17295 -2.1 -3.1 type VI secretion system contractile sheath small subunit compare
PFLU_RS14810 -2.1 -1.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS08065 -2.0 -7.3 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS31510 -2.0 -1.7 transcriptional regulator compare
PFLU_RS13010 -2.0 -3.0 Fe-S biogenesis protein NfuA compare
PFLU_RS28265 -2.0 -1.9 malonate decarboxylase subunit delta compare
PFLU_RS02205 -2.0 -6.9 potassium/proton antiporter compare
PFLU_RS16310 -2.0 -2.2 hypothetical protein compare
PFLU_RS18025 -2.0 -4.0 protein TolQ compare
PFLU_RS19990 -2.0 -4.5 iron-dicitrate ABC transporter permease FecC compare
PFLU_RS11945 -2.0 -3.1 hypothetical protein compare
PFLU_RS28915 -2.0 -9.7 glycine cleavage system aminomethyltransferase GcvT compare
PFLU_RS30345 -2.0 -2.6 DUF2559 family protein compare
PFLU_RS03665 -2.0 -5.3 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS27635 -2.0 -8.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS12675 -2.0 -2.5 DUF2946 domain-containing protein compare
PFLU_RS22070 -2.0 -1.3 phosphoribosylglycinamide formyltransferase compare
PFLU_RS20960 -2.0 -2.8 hypothetical protein compare
PFLU_RS01500 -1.9 -2.3 cell division protein FtsQ compare
PFLU_RS01955 -1.9 -6.4 DUF971 domain-containing protein compare
PFLU_RS07695 -1.9 -2.8 beta-N-acetylhexosaminidase compare
PFLU_RS27420 -1.9 -2.9 response regulator transcription factor compare
PFLU_RS08765 -1.9 -2.5 phosphonate C-P lyase system protein PhnH compare
PFLU_RS07860 -1.9 -3.3 hypothetical protein compare
PFLU_RS09055 -1.9 -1.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS30855 -1.9 -3.1 MerR family transcriptional regulator compare
PFLU_RS30510 -1.9 -4.9 glycosyltransferase family 4 protein compare
PFLU_RS18915 -1.9 -8.9 translocation/assembly module TamB compare
PFLU_RS29760 -1.9 -8.7 phosphate ABC transporter permease PstA compare
PFLU_RS01545 -1.9 -12.1 GABA permease conserved
PFLU_RS04150 -1.9 -5.6 DUF1043 family protein compare
PFLU_RS11870 -1.9 -2.8 type II secretion system protein GspG compare
PFLU_RS24680 -1.9 -2.8 NIF3 1 compare
PFLU_RS19665 -1.9 -1.0 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS08655 -1.9 -3.7 heme ABC transporter permease compare
PFLU_RS01995 -1.9 -9.7 malate dehydrogenase compare
PFLU_RS19165 -1.9 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS18530 -1.9 -1.8 DNA translocase FtsK compare
PFLU_RS02990 -1.8 -4.8 precorrin-3B C(17)-methyltransferase compare
PFLU_RS22395 -1.8 -5.0 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS28450 -1.8 -2.9 cell division ATP-binding protein FtsE compare
PFLU_RS17265 -1.8 -1.7 hypothetical protein compare
PFLU_RS03645 -1.8 -6.5 tetratricopeptide repeat protein compare
PFLU_RS29750 -1.8 -4.2 phosphate signaling complex protein PhoU compare
PFLU_RS13665 -1.8 -0.8 MarR family transcriptional regulator compare
PFLU_RS18920 -1.8 -9.1 outer membrane protein assembly factor compare
PFLU_RS03770 -1.8 -9.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS29380 -1.8 -8.3 D-amino acid dehydrogenase compare
PFLU_RS25800 -1.8 -4.8 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS29420 -1.8 -9.2 aldehyde dehydrogenase compare
PFLU_RS18395 -1.7 -1.0 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS14550 -1.7 -4.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS21995 -1.7 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS13420 -1.7 -3.4 thiol peroxidase compare
PFLU_RS05655 -1.7 -3.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS19170 -1.7 -2.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS01005 -1.7 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS24790 -1.7 -4.3 tetratricopeptide repeat protein compare
PFLU_RS08665 -1.7 -3.9 cytochrome c maturation protein CcmE compare
PFLU_RS09885 -1.7 -5.5 threonine synthase compare
PFLU_RS08685 -1.7 -7.0 c-type cytochrome biogenesis protein CcmI compare
PFLU_RS25225 -1.7 -6.2 disulfide bond formation protein B compare
PFLU_RS01615 -1.7 -3.3 DUF2164 domain-containing protein compare
PFLU_RS07065 -1.7 -3.2 hypothetical protein compare
PFLU_RS31010 -1.7 -0.9 transposase compare
PFLU_RS14995 -1.6 -1.6 response regulator transcription factor compare


Specific Phenotypes

For 33 genes in this experiment

For carbon source 4-Aminobutyric acid in Pseudomonas fluorescens SBW25-INTG

For carbon source 4-Aminobutyric acid across organisms