Experiment set25S550 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Others16 rep B; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.2 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.6 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -4.6 -2.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2320 -4.1 -14.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2318 -3.8 -25.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_71 -3.8 -2.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3248 -3.7 -7.7 Probable transmembrane protein compare
Pf6N2E2_4706 -3.5 -2.8 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3786 -3.5 -11.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_4351 -3.3 -16.7 Predicted signal transduction protein compare
Pf6N2E2_5338 -3.3 -26.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5337 -3.2 -20.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3661 -3.2 -16.5 hypothetical protein compare
Pf6N2E2_5339 -3.1 -19.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5073 -3.1 -5.0 Large-conductance mechanosensitive channel compare
Pf6N2E2_3667 -3.1 -6.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3252 -3.0 -2.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2277 -3.0 -4.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3665 -3.0 -1.2 serine/threonine protein kinase compare
Pf6N2E2_3645 -2.8 -8.9 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_4187 -2.8 -21.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3785 -2.7 -10.2 Twin-arginine translocation protein TatB compare
Pf6N2E2_2139 -2.6 -2.4 Paraquat-inducible protein A compare
Pf6N2E2_3251 -2.6 -6.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5668 -2.6 -3.1 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3932 -2.6 -3.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4473 -2.5 -7.8 HlyD family secretion protein compare
Pf6N2E2_2317 -2.5 -6.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3751 -2.5 -10.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_64 -2.5 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2474 -2.5 -10.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3940 -2.5 -4.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5177 -2.4 -1.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_1396 -2.4 -2.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_3610 -2.3 -1.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2552 -2.3 -6.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2753 -2.3 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_4717 -2.2 -7.7 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Pf6N2E2_3253 -2.2 -1.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4826 -2.2 -1.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3842 -2.2 -1.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5646 -2.1 -2.0 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_77 -2.1 -1.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4720 -2.1 -12.2 Sarcosine oxidase alpha subunit (EC 1.5.3.1) compare
Pf6N2E2_3271 -2.0 -6.3 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3656 -2.0 -12.8 Probable transcription regulator Mig-14 compare
Pf6N2E2_445 -2.0 -9.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4719 -2.0 -5.2 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_63 -2.0 -1.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2822 -1.9 -6.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_477 -1.9 -1.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_3839 -1.9 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2217 -1.9 -1.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5665 -1.9 -1.9 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_3663 -1.9 -10.7 Glycosyl transferase compare
Pf6N2E2_4721 -1.9 -1.8 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_51 -1.9 -7.2 hypothetical protein compare
Pf6N2E2_4752 -1.9 -6.9 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_4048 -1.9 -1.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4803 -1.9 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5257 -1.9 -7.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5679 -1.9 -3.9 hypothetical protein compare
Pf6N2E2_3752 -1.8 -11.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_50 -1.8 -3.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4701 -1.8 -7.4 FIG00953113: hypothetical protein compare
Pf6N2E2_2633 -1.8 -1.2 Nitroreductase family protein compare
Pf6N2E2_4704 -1.8 -5.6 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) compare
Pf6N2E2_4797 -1.8 -4.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_434 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_279 -1.8 -4.7 Isocitrate lyase (EC 4.1.3.1) compare
Pf6N2E2_4471 -1.8 -4.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4072 -1.8 -7.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3171 -1.8 -0.7 hypothetical protein compare
Pf6N2E2_2508 -1.8 -2.7 hypothetical protein compare
Pf6N2E2_4472 -1.8 -8.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3480 -1.7 -0.7 Transcriptional regulator, ArsR family compare
Pf6N2E2_5420 -1.7 -5.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf6N2E2_5258 -1.7 -3.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5647 -1.7 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4705 -1.6 -3.0 Electron transfer flavoprotein, alpha subunit compare
Pf6N2E2_2473 -1.6 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_156 -1.6 -2.1 Carbon storage regulator compare
Pf6N2E2_3659 -1.6 -8.4 Protein fixF compare
Pf6N2E2_3264 -1.6 -5.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4702 -1.6 -7.8 DgcA Dimethylglycine demethylase subunit A compare
Pf6N2E2_5175 -1.6 -1.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2578 -1.6 -1.0 Flagellar biosynthesis protein FliR compare
Pf6N2E2_3630 -1.6 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_1236 -1.6 -1.0 Transcriptional regulator, LysR family compare
Pf6N2E2_3283 -1.6 -6.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5666 -1.6 -1.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4718 -1.6 -4.8 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Pf6N2E2_4825 -1.5 -1.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3828 -1.5 -1.0 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_4075 -1.5 -7.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3687 -1.5 -1.0 FIG00959437: hypothetical protein compare
Pf6N2E2_81 -1.5 -2.2 hypothetical protein compare
Pf6N2E2_3664 -1.5 -7.7 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5676 -1.5 -1.0 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3100 -1.5 -2.8 FIG00953063: hypothetical protein compare
Pf6N2E2_754 -1.5 -0.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_4279 -1.5 -8.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_302 -1.5 -1.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_919 -1.5 -0.9 FIG00954373: hypothetical protein compare
Pf6N2E2_2073 -1.4 -2.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4564 -1.4 -4.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4596 -1.4 -1.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2071 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_2309 -1.4 -3.9 hypothetical protein compare
Pf6N2E2_4597 -1.4 -1.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5659 -1.4 -11.6 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf6N2E2_4074 -1.4 -10.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3672 -1.4 -7.8 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_4052 -1.4 -0.5 FIG00955481: hypothetical protein compare
Pf6N2E2_4690 -1.4 -5.2 L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data) compare
Pf6N2E2_3825 -1.4 -0.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3869 -1.3 -3.7 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_2292 -1.3 -0.9 Universal stress protein family COG0589 compare
Pf6N2E2_289 -1.3 -6.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4691 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_264 -1.3 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4773 -1.3 -0.7 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5955 -1.3 -5.4 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_5593 -1.3 -2.6 Leucyl-tRNA synthetase compare
Pf6N2E2_3655 -1.3 -11.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_1759 -1.3 -1.1 uncharacterized domain 1 compare
Pf6N2E2_5527 -1.3 -1.9 Cold shock protein CspC compare
Pf6N2E2_3521 -1.3 -5.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_4703 -1.3 -2.9 hypothetical protein compare
Pf6N2E2_4070 -1.3 -1.4 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_3624 -1.3 -2.7 Flagellar motor rotation protein MotB compare
Pf6N2E2_453 -1.3 -0.8 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_66 -1.2 -0.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4278 -1.2 -6.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3938 -1.2 -7.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3727 -1.2 -1.1 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_2284 -1.2 -1.5 Cell division inhibitor-related protein compare
Pf6N2E2_5052 -1.2 -0.5 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_1709 -1.2 -1.3 multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_5272 -1.2 -1.3 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_5520 -1.2 -4.7 Sensory box histidine kinase compare
Pf6N2E2_2253 -1.2 -4.0 hypothetical protein compare
Pf6N2E2_2842 -1.2 -0.6 hypothetical protein compare
Pf6N2E2_768 -1.2 -3.6 Fap amyloid fibril minor component compare
Pf6N2E2_1648 -1.2 -2.1 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_2466 -1.2 -6.3 Universal stress protein family compare
Pf6N2E2_5084 -1.2 -5.3 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_3816 -1.2 -7.7 Glycogen phosphorylase (EC 2.4.1.1) compare
Pf6N2E2_799 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_2399 -1.2 -5.9 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_1316 -1.2 -1.9 P-hydroxyphenylacetate hydroxylase C1:reductase component compare
Pf6N2E2_4751 -1.1 -1.5 response regulator compare
Pf6N2E2_3942 -1.1 -4.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3138 -1.1 -2.2 YaeQ protein compare
Pf6N2E2_2795 -1.1 -0.7 putative exported protein compare
Pf6N2E2_2527 -1.1 -4.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2316 -1.1 -6.9 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_5452 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_3912 -1.1 -0.8 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_2472 -1.1 -2.9 hypothetical protein compare
Pf6N2E2_3170 -1.1 -4.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1741 -1.1 -1.2 Transketolase, N-terminal section (EC 2.2.1.1) compare
Pf6N2E2_70 -1.1 -3.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4543 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_1603 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_1501 -1.1 -0.7 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_3899 -1.1 -7.8 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_4467 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_4776 -1.1 -8.0 Coenzyme PQQ synthesis protein F compare
Pf6N2E2_4824 -1.1 -2.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_1412 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_1248 -1.1 -0.7 MutT/nudix family protein compare
Pf6N2E2_3424 -1.1 -2.8 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_1281 -1.1 -0.7 ATPase involved in DNA repair compare
Pf6N2E2_2927 -1.1 -1.6 Putative signal peptide protein compare
Pf6N2E2_2201 -1.1 -3.5 Transmembrane regulator protein PrtR compare
Pf6N2E2_3597 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_4160 -1.1 -0.4 Cytochrome c5 compare
Pf6N2E2_4277 -1.1 -7.2 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_906 -1.1 -0.7 ISPpu14, transposase Orf2 compare
Pf6N2E2_1424 -1.1 -0.9 transcriptional regulator, TetR family compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2310 -1.1 -8.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_295 -1.1 -0.7 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_2778 -1.1 -0.7 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1381 -1.1 -1.9 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2034 -1.1 -0.7 Methyltransferase compare
Pf6N2E2_2837 -1.1 -5.0 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) compare
Pf6N2E2_1754 -1.1 -0.7 FIG00731982: hypothetical protein compare
Pf6N2E2_3841 -1.1 -0.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_6082 -1.0 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2324 -1.0 -1.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_1435 -1.0 -1.7 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_2313 -1.0 -6.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2117 -1.0 -7.2 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_2716 -1.0 -1.3 FIG00954793: hypothetical protein compare
Pf6N2E2_1875 -1.0 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2534 -1.0 -1.0 Cell division protein BolA compare
Pf6N2E2_669 -1.0 -1.3 Nuclease inhibitor compare
Pf6N2E2_3334 -1.0 -5.1 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source Ying_Others16 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Others16 across organisms