Experiment set25S549 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Others16 rep A; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.2 -4.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.5 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -4.6 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3248 -4.2 -7.6 Probable transmembrane protein compare
Pf6N2E2_3661 -4.0 -15.3 hypothetical protein compare
Pf6N2E2_2318 -4.0 -28.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3667 -3.9 -6.9 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_71 -3.7 -2.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2320 -3.7 -13.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5338 -3.3 -24.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5339 -3.2 -19.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4187 -3.1 -22.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5337 -3.1 -16.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3252 -3.0 -2.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4351 -3.0 -16.6 Predicted signal transduction protein compare
Pf6N2E2_5073 -3.0 -5.0 Large-conductance mechanosensitive channel compare
Pf6N2E2_3665 -2.9 -1.2 serine/threonine protein kinase compare
Pf6N2E2_3645 -2.8 -8.4 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_4706 -2.8 -3.9 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3786 -2.7 -10.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_5668 -2.7 -2.6 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_2139 -2.6 -1.8 Paraquat-inducible protein A compare
Pf6N2E2_3656 -2.6 -15.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_3251 -2.5 -4.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2277 -2.5 -4.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_64 -2.4 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4473 -2.4 -7.5 HlyD family secretion protein compare
Pf6N2E2_3751 -2.4 -9.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3785 -2.4 -11.9 Twin-arginine translocation protein TatB compare
Pf6N2E2_2474 -2.4 -9.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2552 -2.4 -6.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5177 -2.4 -1.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_2317 -2.3 -8.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3610 -2.3 -1.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2753 -2.3 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_3932 -2.2 -3.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3253 -2.2 -1.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4826 -2.2 -1.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4720 -2.1 -11.6 Sarcosine oxidase alpha subunit (EC 1.5.3.1) compare
Pf6N2E2_3630 -2.1 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3842 -2.1 -1.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3940 -2.1 -3.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5257 -2.1 -6.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_51 -2.1 -8.2 hypothetical protein compare
Pf6N2E2_77 -2.1 -1.4 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4719 -2.1 -5.2 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_4752 -2.1 -6.7 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_4701 -2.0 -6.3 FIG00953113: hypothetical protein compare
Pf6N2E2_50 -2.0 -3.6 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4704 -2.0 -4.6 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) compare
Pf6N2E2_3264 -2.0 -11.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2217 -1.9 -1.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_63 -1.9 -1.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5242 -1.9 -1.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5665 -1.9 -1.9 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_302 -1.9 -2.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3839 -1.9 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3752 -1.9 -10.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3271 -1.8 -5.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5258 -1.8 -3.0 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2501 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_4762 -1.8 -1.2 Biotin synthesis protein BioH compare
Pf6N2E2_4717 -1.8 -6.0 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Pf6N2E2_4048 -1.8 -1.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3663 -1.8 -10.1 Glycosyl transferase compare
Pf6N2E2_2508 -1.8 -2.5 hypothetical protein compare
Pf6N2E2_445 -1.8 -10.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_434 -1.8 -1.1 hypothetical protein compare
Pf6N2E2_4472 -1.8 -8.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4471 -1.7 -5.1 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3521 -1.7 -6.3 Sensor histidine kinase/response regulator compare
Pf6N2E2_4797 -1.7 -3.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_405 -1.7 -1.0 hypothetical protein compare
Pf6N2E2_4279 -1.7 -9.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4721 -1.7 -1.9 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_3659 -1.7 -7.2 Protein fixF compare
Pf6N2E2_2473 -1.6 -0.7 Major outer membrane lipoprotein I compare
Pf6N2E2_4718 -1.6 -5.3 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Pf6N2E2_4702 -1.6 -6.7 DgcA Dimethylglycine demethylase subunit A compare
Pf6N2E2_2253 -1.6 -4.8 hypothetical protein compare
Pf6N2E2_1396 -1.6 -2.0 ABC transporter, ATP-binding protein compare
Pf6N2E2_1435 -1.6 -2.0 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_4072 -1.6 -7.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4705 -1.6 -3.0 Electron transfer flavoprotein, alpha subunit compare
Pf6N2E2_4803 -1.6 -0.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2578 -1.6 -1.0 Flagellar biosynthesis protein FliR compare
Pf6N2E2_5666 -1.5 -1.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5175 -1.5 -1.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4459 -1.5 -0.9 Transcriptional regulator, GntR family compare
Pf6N2E2_4075 -1.5 -8.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5955 -1.5 -5.9 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_3984 -1.5 -9.2 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5647 -1.5 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_1779 -1.5 -1.0 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_942 -1.5 -0.9 Mll6465 protein compare
Pf6N2E2_3828 -1.5 -1.0 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_2188 -1.5 -1.6 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_5659 -1.5 -11.8 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf6N2E2_4825 -1.5 -1.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3687 -1.5 -0.9 FIG00959437: hypothetical protein compare
Pf6N2E2_754 -1.5 -0.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_3283 -1.5 -5.5 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_4564 -1.4 -4.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2367 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_279 -1.4 -2.2 Isocitrate lyase (EC 4.1.3.1) compare
Pf6N2E2_4074 -1.4 -11.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_5420 -1.4 -4.7 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf6N2E2_3938 -1.4 -8.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3664 -1.4 -9.0 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_289 -1.4 -6.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4596 -1.4 -1.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4597 -1.4 -1.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_477 -1.4 -2.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_2071 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_4052 -1.4 -0.5 FIG00955481: hypothetical protein compare
Pf6N2E2_6095 -1.3 -1.2 tRNA-Asn-GTT compare
Pf6N2E2_2073 -1.3 -0.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3004 -1.3 -1.5 Prophage baseplate assembly protein V compare
Pf6N2E2_5679 -1.3 -2.4 hypothetical protein compare
Pf6N2E2_3869 -1.3 -3.8 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_2292 -1.3 -0.9 Universal stress protein family COG0589 compare
Pf6N2E2_5676 -1.3 -1.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5084 -1.3 -5.4 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_5520 -1.3 -4.7 Sensory box histidine kinase compare
Pf6N2E2_2316 -1.3 -8.2 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_3088 -1.3 -1.0 hypothetical protein compare
Pf6N2E2_4703 -1.3 -2.2 hypothetical protein compare
Pf6N2E2_956 -1.3 -0.8 FIG01210404: hypothetical protein compare
Pf6N2E2_2061 -1.3 -1.8 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_4163 -1.3 -0.9 FIG00953549: hypothetical protein compare
Pf6N2E2_1381 -1.2 -1.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3816 -1.2 -8.0 Glycogen phosphorylase (EC 2.4.1.1) compare
Pf6N2E2_4070 -1.2 -1.4 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_4278 -1.2 -6.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_453 -1.2 -0.8 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2399 -1.2 -6.2 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_4624 -1.2 -1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_2527 -1.2 -6.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3825 -1.2 -1.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_1626 -1.2 -3.8 Putative ATP-binding component of a transport system compare
Pf6N2E2_3826 -1.2 -4.5 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4907 -1.2 -8.5 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_66 -1.2 -0.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2113 -1.2 -1.1 Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf6N2E2_3424 -1.2 -3.3 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_3899 -1.2 -8.1 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5052 -1.2 -0.5 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_2822 -1.2 -4.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_768 -1.2 -3.7 Fap amyloid fibril minor component compare
Pf6N2E2_650 -1.2 -0.8 General secretion pathway protein M compare
Pf6N2E2_603 -1.2 -1.1 FIG00953934: hypothetical protein compare
Pf6N2E2_3727 -1.2 -1.0 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_6040 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_5153 -1.2 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_3100 -1.2 -2.4 FIG00953063: hypothetical protein compare
Pf6N2E2_6100 -1.2 -0.8 tRNA-Val-TAC compare
Pf6N2E2_5394 -1.1 -3.3 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_4050 -1.1 -1.2 FIG00953718: hypothetical protein compare
Pf6N2E2_2080 -1.1 -0.6 hypothetical protein compare
Pf6N2E2_4383 -1.1 -6.6 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_2309 -1.1 -3.9 hypothetical protein compare
Pf6N2E2_799 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2201 -1.1 -5.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_3655 -1.1 -9.6 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_156 -1.1 -2.0 Carbon storage regulator compare
Pf6N2E2_4692 -1.1 -4.2 dehydrocarnitine cleavage enzyme (EC 2.3.1.-) (from data) compare
Pf6N2E2_5392 -1.1 -2.6 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3666 -1.1 -3.9 InaA protein compare
Pf6N2E2_4678 -1.1 -0.6 hypothetical protein compare
Pf6N2E2_4690 -1.1 -4.5 L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data) compare
Pf6N2E2_3039 -1.1 -7.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5155 -1.1 -2.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2311 -1.1 -7.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4542 -1.1 -2.5 negative regulator of hrp expression HrpV compare
Pf6N2E2_1603 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3820 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_1870 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_1386 -1.1 -3.9 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_1078 -1.1 -5.8 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
Pf6N2E2_4543 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2633 -1.1 -1.2 Nitroreductase family protein compare
Pf6N2E2_1249 -1.1 -0.7 Transcriptional regulator, AraC family compare
Pf6N2E2_1501 -1.1 -0.7 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_2440 -1.1 -0.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1281 -1.1 -0.7 ATPase involved in DNA repair compare
Pf6N2E2_2507 -1.1 -3.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_1248 -1.1 -0.7 MutT/nudix family protein compare
Pf6N2E2_1754 -1.1 -0.7 FIG00731982: hypothetical protein compare
Pf6N2E2_2310 -1.1 -8.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1664 -1.1 -2.3 Nitrate/nitrite transporter compare
Pf6N2E2_4689 -1.1 -5.7 L-carnitine 3-dehydrogenase, B subunit (EC 1.1.1.108) (from data) compare
Pf6N2E2_4083 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_4160 -1.1 -0.4 Cytochrome c5 compare
Pf6N2E2_3170 -1.1 -3.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1412 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2927 -1.1 -1.6 Putative signal peptide protein compare
Pf6N2E2_906 -1.0 -0.7 ISPpu14, transposase Orf2 compare
Pf6N2E2_2313 -1.0 -3.8 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2465 -1.0 -2.0 Cys regulon transcriptional activator CysB compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source Ying_Others16 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Others16 across organisms