Experiment set25S548 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Nucleobase14 rep C; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.4 -5.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.8 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3661 -5.5 -11.2 hypothetical protein compare
Pf6N2E2_2074 -4.6 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3271 -4.3 -5.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_71 -3.9 -2.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3060 -3.5 -3.1 Outer membrane protein H precursor compare
Pf6N2E2_3252 -3.2 -2.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3630 -2.9 -2.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2253 -2.8 -3.0 hypothetical protein compare
Pf6N2E2_5803 -2.8 -3.3 Allantoicase (EC 3.5.3.4) compare
Pf6N2E2_2318 -2.7 -20.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3645 -2.7 -12.1 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3932 -2.7 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_64 -2.6 -1.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2320 -2.6 -10.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5177 -2.6 -1.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3940 -2.6 -4.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2235 -2.6 -7.5 Xanthine permease compare
Pf6N2E2_3610 -2.6 -1.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5223 -2.5 -2.5 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_2474 -2.5 -10.6 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5328 -2.5 -1.7 FIG00958649: hypothetical protein compare
Pf6N2E2_4590 -2.5 -2.4 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_3842 -2.5 -1.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3751 -2.5 -4.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4826 -2.5 -1.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2753 -2.4 -1.7 HtrA protease/chaperone protein compare
Pf6N2E2_3253 -2.4 -1.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2139 -2.4 -3.4 Paraquat-inducible protein A compare
Pf6N2E2_3248 -2.4 -6.5 Probable transmembrane protein compare
Pf6N2E2_4473 -2.4 -10.2 HlyD family secretion protein compare
Pf6N2E2_2423 -2.4 -9.0 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_3659 -2.4 -7.0 Protein fixF compare
Pf6N2E2_2822 -2.3 -5.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_77 -2.3 -1.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3251 -2.3 -8.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2338 -2.3 -6.2 XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) compare
Pf6N2E2_5258 -2.3 -2.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3658 -2.2 -12.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1402 -2.2 -4.3 hypothetical protein compare
Pf6N2E2_5257 -2.2 -6.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4048 -2.2 -1.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5802 -2.2 -5.7 Ureidoglycolate hydrolase (EC 3.5.3.19) compare
Pf6N2E2_3839 -2.2 -1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_63 -2.2 -1.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3984 -2.2 -11.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4762 -2.2 -1.4 Biotin synthesis protein BioH compare
Pf6N2E2_3644 -2.1 -4.3 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Pf6N2E2_2552 -2.1 -4.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_603 -2.1 -1.4 FIG00953934: hypothetical protein compare
Pf6N2E2_2501 -2.1 -1.4 hypothetical protein compare
Pf6N2E2_3464 -2.1 -9.6 LysR family transcriptional regulator PA0133 compare
Pf6N2E2_302 -2.1 -3.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5392 -2.1 -3.6 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_163 -2.1 -2.6 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf6N2E2_164 -2.0 -7.0 Ribose operon repressor compare
Pf6N2E2_2117 -2.0 -10.0 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_3752 -2.0 -10.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3463 -2.0 -6.3 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
Pf6N2E2_5073 -2.0 -7.0 Large-conductance mechanosensitive channel compare
Pf6N2E2_434 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_1400 -2.0 -1.9 Sensory box histidine kinase/response regulator compare
Pf6N2E2_4471 -1.9 -5.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5962 -1.9 -3.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4472 -1.9 -10.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5394 -1.9 -4.3 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_2336 -1.9 -5.5 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) compare
Pf6N2E2_1759 -1.9 -1.3 uncharacterized domain 1 compare
Pf6N2E2_50 -1.9 -7.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4825 -1.9 -1.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2578 -1.9 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_292 -1.8 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_2473 -1.8 -0.8 Major outer membrane lipoprotein I compare
Pf6N2E2_2337 -1.8 -8.0 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) compare
Pf6N2E2_5175 -1.8 -1.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2857 -1.8 -1.2 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_5647 -1.8 -2.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2217 -1.8 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3828 -1.8 -1.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_16 -1.8 -0.7 hypothetical protein compare
Pf6N2E2_2422 -1.8 -5.5 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_162 -1.8 -5.5 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
Pf6N2E2_431 -1.8 -4.6 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf6N2E2_4596 -1.8 -1.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4597 -1.8 -1.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2258 -1.8 -1.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3687 -1.7 -1.1 FIG00959437: hypothetical protein compare
Pf6N2E2_3942 -1.7 -4.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3591 -1.7 -1.1 NUDIX hydrolase compare
Pf6N2E2_432 -1.7 -8.1 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf6N2E2_4052 -1.7 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_1381 -1.6 -1.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5023 -1.6 -1.1 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_4810 -1.6 -9.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_1506 -1.6 -1.1 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_1670 -1.6 -1.1 conserved membrane protein compare
Pf6N2E2_2508 -1.6 -1.6 hypothetical protein compare
Pf6N2E2_4803 -1.6 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2507 -1.6 -2.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_754 -1.6 -0.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_2885 -1.6 -7.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1404 -1.6 -1.4 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_6064 -1.6 -2.6 2-methylaconitate isomerase compare
Pf6N2E2_5899 -1.6 -2.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3663 -1.5 -7.6 Glycosyl transferase compare
Pf6N2E2_5262 -1.5 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_3003 -1.5 -1.0 Bacteriophage protein GP46 compare
Pf6N2E2_4564 -1.5 -4.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_1709 -1.5 -1.4 multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_66 -1.5 -1.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_264 -1.5 -1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5115 -1.5 -1.7 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_5894 -1.5 -1.0 Putative threonine efflux protein compare
Pf6N2E2_2506 -1.5 -6.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_384 -1.5 -6.2 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5839 -1.5 -9.7 Glyoxylate carboligase (EC 4.1.1.47) compare
Pf6N2E2_116 -1.5 -1.6 Glycosyltransferase compare
Pf6N2E2_453 -1.4 -0.9 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4543 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_2795 -1.4 -0.9 putative exported protein compare
Pf6N2E2_48 -1.4 -0.9 FIG00955661: hypothetical protein compare
Pf6N2E2_658 -1.4 -3.8 sensor histidine kinase compare
Pf6N2E2_3277 -1.4 -0.9 FagA protein compare
Pf6N2E2_3816 -1.4 -9.2 Glycogen phosphorylase (EC 2.4.1.1) compare
Pf6N2E2_2073 -1.4 -2.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2465 -1.4 -2.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3845 -1.4 -8.8 A/G-specific adenine glycosylase (EC 3.2.2.-) compare
Pf6N2E2_799 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_945 -1.4 -0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_4177 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_5807 -1.4 -0.9 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_2778 -1.3 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_4047 -1.3 -0.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4160 -1.3 -0.5 Cytochrome c5 compare
Pf6N2E2_922 -1.3 -1.7 FIG00794167: hypothetical protein compare
Pf6N2E2_1501 -1.3 -0.8 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_1281 -1.3 -0.8 ATPase involved in DNA repair compare
Pf6N2E2_1412 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_1248 -1.3 -0.8 MutT/nudix family protein compare
Pf6N2E2_3825 -1.3 -1.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2708 -1.3 -0.8 Lactam utilization protein LamB compare
Pf6N2E2_5518 -1.3 -2.8 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Pf6N2E2_1603 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_1028 -1.3 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_906 -1.3 -0.8 ISPpu14, transposase Orf2 compare
Pf6N2E2_1292 -1.2 -1.9 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5666 -1.2 -2.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_1754 -1.2 -0.8 FIG00731982: hypothetical protein compare
Pf6N2E2_5906 -1.2 -1.1 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_2633 -1.2 -1.3 Nitroreductase family protein compare
Pf6N2E2_2513 -1.2 -0.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2844 -1.2 -1.1 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_472 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_2471 -1.2 -9.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1875 -1.2 -0.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_4415 -1.2 -0.8 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_904 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_5704 -1.2 -0.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_956 -1.2 -1.1 FIG01210404: hypothetical protein compare
Pf6N2E2_2681 -1.2 -0.8 3-phosphoglycerate kinase compare
Pf6N2E2_1040 -1.2 -0.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_6057 -1.2 -4.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_6082 -1.2 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_638 -1.2 -0.8 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_5979 -1.2 -5.9 D-galactonate regulator, IclR family compare
Pf6N2E2_5219 -1.2 -2.9 FIG140336: TPR domain protein compare
Pf6N2E2_4817 -1.2 -9.0 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_5455 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_5679 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_6065 -1.2 -0.7 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2388 -1.2 -0.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_2749 -1.2 -3.0 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
Pf6N2E2_2467 -1.2 -0.7 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_3349 -1.2 -0.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1776 -1.2 -0.7 Chemotaxis protein CheD compare
Pf6N2E2_3264 -1.2 -6.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_1401 -1.2 -2.2 FIG00955631: hypothetical protein compare
Pf6N2E2_2855 -1.2 -1.3 DGPFAETKE compare
Pf6N2E2_2080 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_3664 -1.2 -5.7 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5801 -1.2 -6.7 FIG137887: membrane protein related to purine degradation compare
Pf6N2E2_4005 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_146 -1.2 -3.2 Transcriptional regulator, MarR family compare
Pf6N2E2_1987 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_4381 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_178 -1.1 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4171 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_5830 -1.1 -1.7 FIG00960829: hypothetical protein compare
Pf6N2E2_5235 -1.1 -6.9 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Pf6N2E2_3557 -1.1 -0.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_5264 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_3550 -1.1 -0.7 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_4752 -1.1 -7.3 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_3872 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3763 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_1966 -1.1 -0.7 SAM-dependent methyltransferases compare
Pf6N2E2_4479 -1.1 -0.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_4824 -1.1 -2.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_4508 -1.1 -0.7 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Ying_Nucleobase14 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Nucleobase14 across organisms