Experiment set25S547 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Nucleobase14 rep B; time point 3

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4451 +2.9 19.8 FIG139438: lipoprotein B compare
Pf6N2E2_2447 +2.7 8.6 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5155 +2.7 12.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4153 +2.4 10.1 Sensory box histidine kinase compare
Pf6N2E2_5705 +2.1 10.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1392 +2.1 3.4 sensor histidine kinase compare
Pf6N2E2_817 +2.1 10.3 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_2754 +2.0 3.9 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_1393 +2.0 8.5 hypothetical protein compare
Pf6N2E2_4889 +1.9 12.4 Putative transport protein compare
Pf6N2E2_2527 +1.9 11.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5840 +1.8 3.1 hypothetical protein compare
Pf6N2E2_2312 +1.8 4.1 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5237 +1.7 2.1 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2166 +1.6 8.1 protein of unknown function DUF6, transmembrane compare
Pf6N2E2_2899 +1.6 3.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4159 +1.6 11.7 Cytochrome c4 compare
Pf6N2E2_1389 +1.6 10.2 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_5520 +1.5 7.4 Sensory box histidine kinase compare
Pf6N2E2_1398 +1.5 7.1 Rhodanese-related sulfurtransferase compare
Pf6N2E2_4640 +1.5 1.3 hypothetical protein compare
Pf6N2E2_5086 +1.5 0.5 hypothetical protein compare
Pf6N2E2_2605 +1.4 13.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4364 +1.4 3.9 Protein YicC compare
Pf6N2E2_5554 +1.4 6.4 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_1490 +1.4 0.8 hypothetical protein compare
Pf6N2E2_2384 +1.3 3.3 CmpX compare
Pf6N2E2_3607 +1.3 7.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5425 +1.3 2.1 hypothetical protein compare
Pf6N2E2_3072 +1.3 6.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_2469 +1.3 6.5 hypothetical protein compare
Pf6N2E2_2674 +1.2 0.6 FIG00953856: hypothetical protein compare
Pf6N2E2_693 +1.2 1.3 hypothetical protein compare
Pf6N2E2_2606 +1.2 8.9 hypothetical protein compare
Pf6N2E2_1885 +1.2 1.7 Transcriptional regulator, AraC family compare
Pf6N2E2_3571 +1.2 3.1 Urease accessory protein UreF compare
Pf6N2E2_2758 +1.1 7.8 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_4187 +1.1 10.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_631 +1.1 3.2 2-ketogluconate utilization repressor PtxS compare
Pf6N2E2_2592 +1.1 4.7 Flagellar motor switch protein FliG compare
Pf6N2E2_160 +1.1 1.4 hypothetical protein compare
Pf6N2E2_2279 +1.1 2.7 FIG00954981: hypothetical protein compare
Pf6N2E2_3635 +1.1 1.8 FIG00953138: hypothetical protein compare
Pf6N2E2_1735 +1.1 1.1 PhnB protein compare
Pf6N2E2_5365 +1.0 3.4 Heavy metal sensor histidine kinase compare
Pf6N2E2_5676 +1.0 2.0 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_2593 +1.0 4.6 Flagellar M-ring protein FliF compare
Pf6N2E2_3190 +1.0 4.3 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_2881 +1.0 4.0 Putative cytoplasmic protein compare
Pf6N2E2_2706 +1.0 2.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_2167 +1.0 5.2 hypothetical protein compare
Pf6N2E2_2628 +1.0 6.8 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_3885 +1.0 2.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_2865 +1.0 7.2 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_3261 +1.0 9.2 hypothetical protein compare
Pf6N2E2_4918 +1.0 1.2 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3303 +1.0 2.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2007 +0.9 2.5 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_3560 +0.9 4.1 membrane protein, putative compare
Pf6N2E2_4797 +0.9 4.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3588 +0.9 1.3 hypothetical protein compare
Pf6N2E2_3829 +0.9 3.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_2583 +0.9 4.1 Flagellar motor switch protein FliM compare
Pf6N2E2_172 +0.9 2.4 FIG00953292: hypothetical protein compare
Pf6N2E2_2590 +0.9 5.1 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_4635 +0.9 4.6 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_3901 +0.9 1.5 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_5733 +0.9 2.2 NLP/P60 family protein compare
Pf6N2E2_1625 +0.9 1.1 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4417 +0.9 4.1 Protein of unknown function DUF484 compare
Pf6N2E2_2579 +0.8 3.7 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_4548 +0.8 0.9 hypothetical protein compare
Pf6N2E2_5133 +0.8 1.6 FIG00953980: hypothetical protein compare
Pf6N2E2_2165 +0.8 6.2 Uncharacterized conserved protein compare
Pf6N2E2_2755 +0.8 1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2278 +0.8 6.4 Transcription-repair coupling factor compare
Pf6N2E2_5499 +0.8 1.3 hypothetical protein compare
Pf6N2E2_692 +0.8 1.7 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_2589 +0.8 2.2 Flagellar protein FliJ compare
Pf6N2E2_1083 +0.8 0.8 hypothetical protein compare
Pf6N2E2_4980 +0.8 2.5 hypothetical protein compare
Pf6N2E2_3713 +0.8 1.3 Acyl carrier protein compare
Pf6N2E2_3326 +0.8 0.7 hypothetical protein compare
Pf6N2E2_2594 +0.8 4.4 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2712 +0.8 3.8 Permeases of the major facilitator superfamily compare
Pf6N2E2_2627 +0.8 5.3 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_613 +0.8 1.0 lipoprotein, putative compare
Pf6N2E2_4276 +0.8 3.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2428 +0.8 6.0 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5340 +0.8 6.5 Stringent starvation protein A compare
Pf6N2E2_2577 +0.8 4.9 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_446 +0.8 4.2 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_69 +0.8 4.6 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_1391 +0.8 0.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_5710 +0.8 5.1 probable membrane protein YPO2362 compare
Pf6N2E2_1997 +0.8 0.8 FIG00956406: hypothetical protein compare
Pf6N2E2_2285 +0.8 1.1 FIG00954079: hypothetical protein compare
Pf6N2E2_2624 +0.8 4.0 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_5955 +0.8 4.0 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_4609 +0.7 3.1 UPF0301 protein YqgE compare
Pf6N2E2_1385 +0.7 2.2 FIG00956261: hypothetical protein compare
Pf6N2E2_1813 +0.7 2.0 ABC-type oligopeptide transport system, ATPase component compare
Pf6N2E2_2585 +0.7 5.0 Flagellar hook-length control protein FliK compare
Pf6N2E2_1838 +0.7 1.0 6-hexanolactone hydrolase compare
Pf6N2E2_2699 +0.7 4.4 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_2198 +0.7 2.4 Cytochrome B561, bacterial precursor compare
Pf6N2E2_1382 +0.7 4.9 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_2626 +0.7 4.2 Flagellar L-ring protein FlgH compare
Pf6N2E2_5862 +0.7 1.0 Lipoprotein, putative compare
Pf6N2E2_1386 +0.7 3.1 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_3899 +0.7 4.0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5246 +0.7 3.2 FIG00955938: hypothetical protein compare
Pf6N2E2_1176 +0.7 3.2 Mll2356 protein compare
Pf6N2E2_2448 +0.7 2.3 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_4694 +0.7 1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_777 +0.7 1.7 FMN-dependent NADH-azoreductase compare
Pf6N2E2_5691 +0.7 4.1 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_5153 +0.7 4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_5695 +0.7 3.2 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2201 +0.7 2.8 Transmembrane regulator protein PrtR compare
Pf6N2E2_816 +0.7 1.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_2399 +0.7 3.4 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_5174 +0.7 1.7 Glycosyltransferase compare
Pf6N2E2_1431 +0.6 0.6 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_4630 +0.6 3.5 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_4570 +0.6 0.9 Cation/multidrug efflux pump compare
Pf6N2E2_5261 +0.6 1.0 FIG00956983: hypothetical protein compare
Pf6N2E2_5236 +0.6 1.1 hypothetical protein compare
Pf6N2E2_4300 +0.6 1.2 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_1718 +0.6 1.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1582 +0.6 1.0 HlyD family secretion protein compare
Pf6N2E2_746 +0.6 1.6 FIG00958097: hypothetical protein compare
Pf6N2E2_664 +0.6 1.2 Acetoin catabolism protein X compare
Pf6N2E2_1395 +0.6 2.9 Uncharacterized conserved protein compare
Pf6N2E2_1328 +0.6 1.4 Methyl-accepting chemotaxis protein compare
Pf6N2E2_828 +0.6 1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_5697 +0.6 4.9 Flagellar hook protein FlgE compare
Pf6N2E2_1626 +0.6 1.5 Putative ATP-binding component of a transport system compare
Pf6N2E2_2420 +0.6 0.6 hypothetical protein compare
Pf6N2E2_5329 +0.6 2.2 Alpha/beta hydrolase compare
Pf6N2E2_5945 +0.6 2.6 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_1792 +0.6 1.1 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_525 +0.6 4.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4111 +0.6 2.3 Putative outer membrane lipoprotein compare
Pf6N2E2_1279 +0.6 0.9 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_3041 +0.6 3.8 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf6N2E2_5806 +0.6 0.6 hypothetical protein compare
Pf6N2E2_6099 +0.6 0.3 tRNA-Glu-TTC compare
Pf6N2E2_2576 +0.6 4.0 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2981 +0.6 0.6 FIG00956655: hypothetical protein compare
Pf6N2E2_4061 +0.6 3.0 Rubredoxin compare
Pf6N2E2_1394 +0.6 2.2 FIG00953323: hypothetical protein compare
Pf6N2E2_509 +0.6 1.2 Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18) compare
Pf6N2E2_367 +0.6 0.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_1819 +0.6 1.7 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_1706 +0.6 1.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_1639 +0.6 1.5 ABC-type phosphate transport system, periplasmic component compare
Pf6N2E2_2563 +0.6 4.4 FIG00953562: hypothetical protein compare
Pf6N2E2_122 +0.6 1.3 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_3313 +0.6 1.2 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_3850 +0.6 5.2 FIG074102: hypothetical protein compare
Pf6N2E2_3648 +0.6 3.0 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf6N2E2_4601 +0.6 0.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2922 +0.6 2.6 hypothetical protein compare
Pf6N2E2_2842 +0.6 0.6 hypothetical protein compare
Pf6N2E2_2321 +0.6 2.7 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_203 +0.6 1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1397 +0.6 4.0 ABC transporter permease protein compare
Pf6N2E2_2584 +0.6 2.6 Flagellar biosynthesis protein FliL compare
Pf6N2E2_1856 +0.6 2.2 phytoene dehydrogenase family protein compare
Pf6N2E2_3963 +0.6 2.8 FIG00957387: hypothetical protein compare
Pf6N2E2_3969 +0.6 2.6 Membrane-fusion protein compare
Pf6N2E2_68 +0.6 0.9 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_2640 +0.6 0.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3397 +0.6 1.5 Phage protein compare
Pf6N2E2_4097 +0.6 4.3 FIG00953365: hypothetical protein compare
Pf6N2E2_1463 +0.5 1.1 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_1450 +0.5 1.6 FIG00960438: hypothetical protein compare
Pf6N2E2_2546 +0.5 0.8 Carbon storage regulator compare
Pf6N2E2_3081 +0.5 3.2 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_5625 +0.5 0.9 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
Pf6N2E2_5344 +0.5 2.4 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Pf6N2E2_5940 +0.5 2.8 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Pf6N2E2_2524 +0.5 3.1 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Pf6N2E2_3655 +0.5 4.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2043 +0.5 2.8 Twitching motility protein PilT compare
Pf6N2E2_4389 +0.5 2.5 FIG00954130: hypothetical protein compare
Pf6N2E2_2602 +0.5 3.0 Flagellin protein FlaA compare
Pf6N2E2_3384 +0.5 1.1 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_4772 +0.5 3.5 Coenzyme PQQ synthesis protein E compare
Pf6N2E2_474 +0.5 1.4 Transcriptional regulator, ArsR family compare
Pf6N2E2_751 +0.5 2.0 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_5553 +0.5 2.7 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_863 +0.5 2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_4397 +0.5 1.1 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_3338 +0.5 0.5 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_4607 +0.5 3.0 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_4084 +0.5 4.8 Transcriptional regulator compare
Pf6N2E2_5877 +0.5 0.7 Phosphohistidine phosphatase SixA compare
Pf6N2E2_54 +0.5 1.6 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Ying_Nucleobase14 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Nucleobase14 across organisms