Experiment set25S545 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_OrganicAcid7 rep C; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.5 -5.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.9 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3271 -5.8 -4.3 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3661 -5.4 -11.6 hypothetical protein compare
Pf6N2E2_2277 -5.4 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2074 -4.8 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_71 -4.1 -2.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4187 -3.9 -27.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4351 -3.8 -17.7 Predicted signal transduction protein compare
Pf6N2E2_5339 -3.7 -20.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_51 -3.6 -10.0 hypothetical protein compare
Pf6N2E2_3252 -3.4 -2.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3665 -3.3 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3630 -3.0 -2.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2518 -3.0 -3.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4907 -2.9 -14.7 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_3251 -2.9 -2.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1870 -2.9 -1.9 hypothetical protein compare
Pf6N2E2_4601 -2.9 -1.9 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3899 -2.9 -13.7 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_3932 -2.8 -3.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5338 -2.8 -22.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_64 -2.8 -1.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4799 -2.8 -6.6 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_3820 -2.8 -4.3 hypothetical protein compare
Pf6N2E2_5177 -2.7 -1.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3645 -2.7 -13.0 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_4451 -2.7 -12.0 FIG139438: lipoprotein B compare
Pf6N2E2_5155 -2.7 -2.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3610 -2.7 -1.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3659 -2.7 -5.9 Protein fixF compare
Pf6N2E2_2474 -2.6 -11.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3940 -2.6 -3.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4826 -2.6 -1.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4473 -2.6 -9.9 HlyD family secretion protein compare
Pf6N2E2_2753 -2.6 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_3842 -2.6 -1.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3253 -2.6 -1.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3751 -2.5 -5.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3658 -2.5 -13.2 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5258 -2.5 -1.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_77 -2.4 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_70 -2.4 -5.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4801 -2.4 -5.1 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_5272 -2.4 -1.6 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_2822 -2.4 -6.2 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5337 -2.4 -16.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4800 -2.3 -5.9 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_3938 -2.3 -9.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_63 -2.3 -1.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4509 -2.3 -13.1 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
Pf6N2E2_3839 -2.3 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4762 -2.3 -1.5 Biotin synthesis protein BioH compare
Pf6N2E2_4048 -2.3 -1.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2561 -2.3 -1.5 FIG00955434: hypothetical protein compare
Pf6N2E2_3786 -2.3 -9.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_603 -2.3 -1.5 FIG00953934: hypothetical protein compare
Pf6N2E2_477 -2.2 -2.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_3261 -2.2 -13.8 hypothetical protein compare
Pf6N2E2_5647 -2.2 -2.9 Transcriptional regulator, TetR family compare
Pf6N2E2_50 -2.2 -3.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3346 -2.2 -8.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_3826 -2.2 -4.6 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2501 -2.2 -1.4 hypothetical protein compare
Pf6N2E2_2258 -2.2 -3.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2971 -2.1 -19.1 AmpG permease compare
Pf6N2E2_4075 -2.1 -11.8 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5257 -2.1 -2.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_434 -2.1 -1.4 hypothetical protein compare
Pf6N2E2_2217 -2.1 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4472 -2.1 -11.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4810 -2.1 -11.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_4471 -2.1 -4.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4825 -2.0 -1.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3752 -2.0 -10.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_302 -2.0 -3.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3656 -2.0 -12.3 Probable transcription regulator Mig-14 compare
Pf6N2E2_3761 -2.0 -11.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5175 -1.9 -1.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2578 -1.9 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2473 -1.9 -0.8 Major outer membrane lipoprotein I compare
Pf6N2E2_3248 -1.9 -8.4 Probable transmembrane protein compare
Pf6N2E2_2508 -1.9 -2.6 hypothetical protein compare
Pf6N2E2_3785 -1.9 -8.7 Twin-arginine translocation protein TatB compare
Pf6N2E2_4596 -1.9 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5950 -1.9 -2.8 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4597 -1.9 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5665 -1.9 -7.6 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_3687 -1.9 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_1236 -1.9 -1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_4564 -1.9 -5.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5679 -1.9 -3.9 hypothetical protein compare
Pf6N2E2_4072 -1.8 -8.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5722 -1.8 -5.4 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_4809 -1.8 -13.2 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_5676 -1.8 -1.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3672 -1.8 -8.9 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_3603 -1.8 -4.1 FIG003573: hypothetical protein compare
Pf6N2E2_2081 -1.8 -1.6 putative exported protein compare
Pf6N2E2_4052 -1.8 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_2071 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_754 -1.7 -1.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5666 -1.7 -2.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2367 -1.7 -0.9 hypothetical protein compare
Pf6N2E2_5030 -1.7 -8.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_2073 -1.7 -1.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5728 -1.7 -1.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5457 -1.7 -12.5 Membrane carboxypeptidase (penicillin-binding protein) compare
Pf6N2E2_2281 -1.7 -3.2 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2469 -1.7 -4.2 hypothetical protein compare
Pf6N2E2_2292 -1.7 -1.1 Universal stress protein family COG0589 compare
Pf6N2E2_2526 -1.7 -7.0 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_3607 -1.6 -2.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5527 -1.6 -2.0 Cold shock protein CspC compare
Pf6N2E2_3984 -1.6 -11.0 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5084 -1.6 -6.5 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_3825 -1.6 -1.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_66 -1.6 -1.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_289 -1.6 -8.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_453 -1.6 -1.0 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_3942 -1.6 -2.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5707 -1.6 -9.8 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate conserved
Pf6N2E2_2447 -1.6 -5.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5242 -1.6 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_48 -1.6 -1.0 FIG00955661: hypothetical protein compare
Pf6N2E2_5668 -1.5 -5.8 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_2919 -1.5 -1.9 FIG00955830: hypothetical protein compare
Pf6N2E2_4994 -1.5 -4.8 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_4543 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_4680 -1.5 -1.7 HTH-type transcriptional regulator BetI compare
Pf6N2E2_650 -1.5 -1.0 General secretion pathway protein M compare
Pf6N2E2_799 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_2106 -1.5 -0.8 hypothetical protein compare
Pf6N2E2_4838 -1.5 -9.9 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_5807 -1.5 -1.0 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_3841 -1.5 -1.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3037 -1.5 -6.7 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3088 -1.5 -1.1 hypothetical protein compare
Pf6N2E2_3667 -1.5 -6.9 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2320 -1.4 -10.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_94 -1.4 -1.3 Cyn operon transcriptional activator compare
Pf6N2E2_1316 -1.4 -2.4 P-hydroxyphenylacetate hydroxylase C1:reductase component compare
Pf6N2E2_4752 -1.4 -9.2 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_4160 -1.4 -0.6 Cytochrome c5 compare
Pf6N2E2_2778 -1.4 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1281 -1.4 -0.9 ATPase involved in DNA repair compare
Pf6N2E2_1412 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_1603 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_1501 -1.4 -0.9 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_1248 -1.4 -0.9 MutT/nudix family protein compare
Pf6N2E2_1028 -1.4 -0.9 Transcriptional regulator, LysR family compare
Pf6N2E2_4047 -1.4 -1.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_295 -1.4 -0.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_906 -1.4 -0.9 ISPpu14, transposase Orf2 compare
Pf6N2E2_1754 -1.4 -0.9 FIG00731982: hypothetical protein compare
Pf6N2E2_3869 -1.4 -5.7 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_6065 -1.4 -0.9 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_291 -1.4 -4.4 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_3521 -1.4 -6.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_5894 -1.4 -1.8 Putative threonine efflux protein compare
Pf6N2E2_472 -1.4 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_1875 -1.4 -0.9 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2656 -1.4 -1.5 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_2857 -1.4 -1.5 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_1040 -1.4 -0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5243 -1.4 -2.4 hypothetical protein compare
Pf6N2E2_5704 -1.3 -0.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5553 -1.3 -3.0 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_904 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_638 -1.3 -0.8 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2264 -1.3 -1.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3151 -1.3 -3.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4098 -1.3 -7.0 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
Pf6N2E2_1776 -1.3 -0.8 Chemotaxis protein CheD compare
Pf6N2E2_3441 -1.3 -2.1 Gluconate transporter family protein compare
Pf6N2E2_2844 -1.3 -1.2 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_3170 -1.3 -4.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3883 -1.3 -4.2 C4-dicarboxylate transport transcriptional regulatory protein compare
Pf6N2E2_2527 -1.3 -6.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1987 -1.3 -0.7 hypothetical protein compare
Pf6N2E2_2513 -1.3 -0.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2318 -1.3 -11.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2681 -1.3 -0.8 3-phosphoglycerate kinase compare
Pf6N2E2_3349 -1.3 -0.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5455 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_4415 -1.3 -0.8 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_4829 -1.3 -2.4 OsmC/Ohr family protein compare
Pf6N2E2_5402 -1.3 -7.9 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) compare
Pf6N2E2_178 -1.3 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1424 -1.3 -1.1 transcriptional regulator, TetR family compare
Pf6N2E2_3550 -1.3 -0.8 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_3557 -1.3 -0.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_3120 -1.3 -1.1 Chemotaxis signal transduction protein compare
Pf6N2E2_4383 -1.3 -6.9 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_318 -1.3 -0.8 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_2388 -1.3 -0.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_425 -1.2 -1.1 FIG00957304: hypothetical protein compare
Pf6N2E2_2467 -1.2 -0.8 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_4974 -1.2 -2.0 DedA protein compare
Pf6N2E2_1966 -1.2 -0.8 SAM-dependent methyltransferases compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_OrganicAcid7 across organisms