Experiment set25S544 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_OrganicAcid7 rep B; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.5 -5.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.9 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3661 -5.7 -10.2 hypothetical protein compare
Pf6N2E2_2277 -5.4 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2518 -5.4 -3.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3271 -4.8 -2.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2074 -4.8 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_71 -4.0 -2.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_51 -3.6 -10.1 hypothetical protein compare
Pf6N2E2_3932 -3.3 -2.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4351 -3.3 -17.6 Predicted signal transduction protein compare
Pf6N2E2_3252 -3.3 -2.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4187 -3.3 -27.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5339 -3.2 -22.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4907 -3.1 -15.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_3899 -3.0 -13.1 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_3630 -3.0 -2.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3251 -2.8 -2.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3346 -2.8 -8.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_64 -2.8 -1.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4799 -2.7 -6.6 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_5177 -2.7 -1.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4473 -2.7 -9.9 HlyD family secretion protein compare
Pf6N2E2_3610 -2.7 -1.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3645 -2.7 -12.6 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_4451 -2.7 -11.1 FIG139438: lipoprotein B compare
Pf6N2E2_5155 -2.7 -2.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3820 -2.6 -5.0 hypothetical protein compare
Pf6N2E2_2281 -2.6 -3.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3659 -2.6 -6.4 Protein fixF compare
Pf6N2E2_3658 -2.6 -13.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2753 -2.6 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_4826 -2.6 -1.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3842 -2.6 -1.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2474 -2.5 -10.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3751 -2.5 -4.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3253 -2.5 -1.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5338 -2.5 -20.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3826 -2.5 -5.0 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3940 -2.5 -4.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5258 -2.4 -1.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_77 -2.4 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4801 -2.3 -4.2 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_4800 -2.3 -5.6 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_3672 -2.3 -10.1 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_3938 -2.3 -10.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_63 -2.3 -1.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3839 -2.3 -1.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4048 -2.3 -1.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_50 -2.2 -3.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5257 -2.2 -1.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4509 -2.2 -12.5 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
Pf6N2E2_5242 -2.2 -2.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_477 -2.2 -2.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_5337 -2.2 -13.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2217 -2.2 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3786 -2.1 -10.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_2971 -2.1 -18.9 AmpG permease compare
Pf6N2E2_434 -2.1 -1.3 hypothetical protein compare
Pf6N2E2_4472 -2.1 -11.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5668 -2.1 -6.9 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_302 -2.1 -2.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3261 -2.1 -15.3 hypothetical protein compare
Pf6N2E2_2258 -2.1 -3.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2822 -2.1 -6.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3984 -2.1 -10.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3942 -2.0 -5.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3171 -2.0 -0.8 hypothetical protein compare
Pf6N2E2_5722 -2.0 -7.2 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_3752 -2.0 -10.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4075 -2.0 -9.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4471 -2.0 -6.8 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3785 -2.0 -11.4 Twin-arginine translocation protein TatB compare
Pf6N2E2_3761 -2.0 -11.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5950 -2.0 -2.3 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4825 -2.0 -1.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3248 -2.0 -6.1 Probable transmembrane protein compare
Pf6N2E2_5665 -2.0 -8.4 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_3665 -2.0 -1.2 serine/threonine protein kinase compare
Pf6N2E2_405 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_5175 -1.9 -1.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_70 -1.9 -4.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_16 -1.9 -0.8 hypothetical protein compare
Pf6N2E2_2578 -1.9 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_5728 -1.9 -1.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3687 -1.9 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_1236 -1.9 -1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_4596 -1.8 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4597 -1.8 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5746 -1.8 -1.7 Cobalamin synthase compare
Pf6N2E2_5676 -1.8 -1.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5666 -1.8 -1.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5084 -1.8 -6.5 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_3268 -1.7 -3.6 Ribosome hibernation protein YhbH compare
Pf6N2E2_3603 -1.7 -3.3 FIG003573: hypothetical protein compare
Pf6N2E2_4810 -1.7 -10.3 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5647 -1.7 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2508 -1.7 -2.8 hypothetical protein compare
Pf6N2E2_3825 -1.7 -1.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4052 -1.7 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_5457 -1.7 -12.5 Membrane carboxypeptidase (penicillin-binding protein) compare
Pf6N2E2_2320 -1.7 -9.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_1506 -1.7 -1.1 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_2073 -1.7 -2.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5553 -1.7 -2.9 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_3607 -1.7 -3.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5030 -1.6 -7.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_4809 -1.6 -12.6 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_5943 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_4564 -1.6 -4.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_66 -1.6 -1.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3003 -1.6 -1.0 Bacteriophage protein GP46 compare
Pf6N2E2_4838 -1.6 -10.7 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_4070 -1.6 -1.8 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_453 -1.6 -1.0 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4994 -1.6 -4.7 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_3667 -1.6 -3.3 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4773 -1.5 -0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2318 -1.5 -13.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2527 -1.5 -6.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5527 -1.5 -2.1 Cold shock protein CspC compare
Pf6N2E2_48 -1.5 -1.0 FIG00955661: hypothetical protein compare
Pf6N2E2_4752 -1.5 -9.4 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_3912 -1.5 -1.0 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_3521 -1.5 -7.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_945 -1.5 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_799 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_4543 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_3841 -1.5 -1.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2795 -1.5 -0.9 putative exported protein compare
Pf6N2E2_2264 -1.5 -1.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3037 -1.5 -6.8 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2844 -1.5 -1.0 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_5919 -1.5 -1.3 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_4072 -1.4 -7.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_603 -1.4 -1.3 FIG00953934: hypothetical protein compare
Pf6N2E2_1980 -1.4 -1.0 hypothetical protein compare
Pf6N2E2_3255 -1.4 -2.1 YrbA protein compare
Pf6N2E2_2469 -1.4 -3.6 hypothetical protein compare
Pf6N2E2_1281 -1.4 -0.9 ATPase involved in DNA repair compare
Pf6N2E2_2507 -1.4 -4.7 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5707 -1.4 -9.2 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate conserved
Pf6N2E2_2778 -1.4 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1248 -1.4 -0.9 MutT/nudix family protein compare
Pf6N2E2_1412 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_5460 -1.4 -1.6 Phage protein compare
Pf6N2E2_289 -1.4 -7.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4160 -1.4 -0.6 Cytochrome c5 compare
Pf6N2E2_2526 -1.4 -6.0 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_1603 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_3883 -1.4 -4.5 C4-dicarboxylate transport transcriptional regulatory protein compare
Pf6N2E2_906 -1.4 -0.9 ISPpu14, transposase Orf2 compare
Pf6N2E2_3270 -1.4 -1.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4762 -1.4 -1.2 Biotin synthesis protein BioH compare
Pf6N2E2_3869 -1.4 -5.3 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_1501 -1.4 -0.9 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_1028 -1.4 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_2447 -1.4 -5.6 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4047 -1.4 -0.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_1471 -1.4 -1.2 Dienelactone hydrolase and related enzymes compare
Pf6N2E2_5097 -1.4 -0.9 FIG00953595: hypothetical protein compare
Pf6N2E2_2708 -1.4 -0.9 Lactam utilization protein LamB compare
Pf6N2E2_1769 -1.4 -4.3 Nucleoside-diphosphate-sugar epimerases compare
Pf6N2E2_1754 -1.4 -0.9 FIG00731982: hypothetical protein compare
Pf6N2E2_6065 -1.4 -0.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1875 -1.3 -0.9 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_472 -1.3 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_4383 -1.3 -7.1 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_5894 -1.3 -1.5 Putative threonine efflux protein compare
Pf6N2E2_4083 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_904 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_4822 -1.3 -8.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_1435 -1.3 -2.0 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1040 -1.3 -0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2534 -1.3 -1.2 Cell division protein BolA compare
Pf6N2E2_5500 -1.3 -0.9 MoxR-like ATPases compare
Pf6N2E2_5704 -1.3 -0.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_3004 -1.3 -1.7 Prophage baseplate assembly protein V compare
Pf6N2E2_497 -1.3 -1.5 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf6N2E2_2552 -1.3 -5.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2317 -1.3 -6.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2995 -1.3 -0.9 FIG00959768: hypothetical protein compare
Pf6N2E2_2182 -1.3 -2.2 hypothetical protein compare
Pf6N2E2_1776 -1.3 -0.8 Chemotaxis protein CheD compare
Pf6N2E2_5243 -1.3 -2.8 hypothetical protein compare
Pf6N2E2_291 -1.3 -4.1 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2871 -1.3 -0.8 FIG00954271: hypothetical protein compare
Pf6N2E2_3170 -1.3 -4.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5564 -1.3 -8.9 Membrane protein glpM compare
Pf6N2E2_831 -1.3 -1.7 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_3640 -1.3 -1.9 FIG074102: hypothetical protein compare
Pf6N2E2_3612 -1.3 -1.2 HflK protein compare
Pf6N2E2_922 -1.3 -1.8 FIG00794167: hypothetical protein compare
Pf6N2E2_5402 -1.3 -8.0 ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) compare
Pf6N2E2_1987 -1.3 -0.7 hypothetical protein compare
Pf6N2E2_5455 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_5517 -1.3 -1.2 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_5899 -1.3 -4.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5622 -1.3 -0.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_3349 -1.3 -0.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_OrganicAcid7 across organisms